Exam 3 Flashcards
What binds to start signal transduction by RTKs?
a protein with SH2 domain to a tyrosine on the receptor
What is the Ras family composed of?
small G-protiens
What drives over 30% of all human cancers?
Ras genes
How do signals pass from activated Ras?
Ras to Raf to MEK to MAPK
What regulates the activity of many transcription factors that control early response genes?
MAP kinase (MAPK)
In unstimulated cells, where is PKB?
cytosol
In unstimulated cells, what inhibits PKB activity?
catalytic kinase domain bound to pH domain of PKB
What leads to the activation of PI-2 kinase & PKB?
hormone stimulation
Disrupted JAK/STAT signaling can lead to what diseases?
skin conditions, cancer, immune system disorders
What are cytokines important in?
cell signaling
Examples of cytokines?
chemokines
interferons
interleukins
lymphokines
tumor necrosis factors
transforming growth factor
How can the same signal induce different responses in different cells?
different types of cells have different collections of proteins that lead to different cellular events
ex. epinephrine simulates liver for breakdown of glycogen but stimulates heart to contract faster
What causes termination of the cell signal?
- concentration of signal decreases
- G-protein hydrolyzes
- cAMP to AMP
- phosphorylated kinases inactivated
- GRK desensitizes receptors
4 phases of the cell cycle
- G1 (gap stage 1)
- S (synthesis)
- G2 (gap stage 2)
- M (mitosis)
What drives cell cycle progression and initiates centrosome splitting?
CDK
What drives CDK activity?
positive & negative feedback loops
What guarantees each cell cycle step is completed correctly before going to the next step?
checkpoint pathway surveillance mechanisms
How do cells reproduce?
cell division
How do cells produced from mitosis look?
identical to their parent
How do cells produced from meiosis look?
have half the genetic content of the parent
3 main features of cell cycle
- cell growth & DNA replication
- chromosome segregation
- cell division
What cells lack the ability to divide?
nerve, muscle & red blood cells
What cells have a high level of mitotic activity?
stem cells
What cells can be induced to begin DNA synthesis?
liver cells & lymphocytes
Which cell cycle phase is the shortest?
mitotic
What is cytokinesis & when does it happen?
formation of 2 daughter cells; in M phase
What is the interphase?
period between M phases
includes G1 & G2 and S-phase
What are G0 cells & where do they exist?
cells with no ability to receive signals to initiate division; G1 stage
G1 phase
first stage within interphase
runs from M phase until the beginning of DNA synthesis
S phase
second stage within interphase
DNA synthesis & chromosome/centrosome replication
G2 phase
third stage within interphase
lasts until cell enters mitosis
M phase
duplicated chromosomes separate into 2 nuclei, cytokinesis happens
What is a centrosome?
move to opposite ends of the cells during division
work with microtubules to assemble a spindle
What are kinetochores?
near the centromere of the chromosome, where the spindle attaches
What aligns sister chromatid pairs in the spindle?
kinetochore-associated tension-sensing mechanism
What are the stages of mitosis
interphase
prophase
prometaphase
metaphase
anaphase
telophase
cytokinesis
What happens during interphase?
chromosome/centrosome duplication & cohesion
What happens during prophase?
chromosomes condense, nuclear envelope breaks down, formation of mitotic spindle apparatus, kinetochore assembles
What happens during prometaphase?
spindle microtubules attache to kinetochores and center the sister chromatid pairs
What happens during metaphase?
chromosomes align at the metaphase plate
What happens during anaphase?
spindle microtubules shorten, sister chromatids pulled towards opposite sides
What happens during telophase?
each daughter cell reassembles a nuclear membrane
What happens during cytokinesis?
cells fully separate
contractile ring forms cleavage furrow to split the cell
3 classes of microtubules
- astral (project towards cortex/outside)
- kinetochore (connected to chromosomes)
- polar (project towards center)
What are the model organisms for studying cell cycle?
saccharomyces cervisiae
schizosaccharomyces pombe
xenopus laevis
drosophila melanogaster
Where are the major checkpoints?
- G1 checkpoint
- G2 checkpoint
- mitotic checkpoint
What are the checkpoint proteins?
CDK
protein phosphatases
ubiquitin-protein ligases
What does the activity of CDK depend on?
cyclins
What cyclin-CDK complexes promote entry into cell cycle?
G1 cyclin-CDK
G1/S phase cyclin-CDK
What cyclin-CDK complex triggers S phase
S phase cyclin-CDK
What cyclin-CDK complex initiates mitosis?
mitotic cyclin-CDK
How can you regulate CDKs?
- cyclin binding
- CDK phosphorylation
- CDK inhibitors
- controlled proteolysis
- sub cellular localization
What cyclins can CDK1 act on?
cyclins A & B
for mitosis
What cyclins can CDK2 act on?
cyclins E & A
for entry into cell cycle & S phase
What cyclin can CDK4 act on?
cyclin D
for G1 entry into cell cycle
What cyclin can CDK6 act on?
cyclin D
for G1 entry into cell cycle
What dephosphorylates CDK1?
Cdc25
What phosphorylates CDK1?
Wee1
What inhibits the S phase CDK complex & prevents the cell from entering the S phase?
Sic1
In order for the cell to enter the next phase what must be done?
everything must be done correctly & the cyclin that blocks it must be degraded
5 basic steps of genome replication
- recognition of replicate origins
- assembling replication initiation factors
- recruitment of helicase cofactors
- activation of helicase
- DNA polymerase copies each strand
What CDKs get phosphorylated to then phosphorylate MCM helicases to make them active?
S phase CDKs
What glue sister chromatids together?
cohesive molecules
What do aurora proteins do?
stop mitotic process until the correct tension is formed
What does chromosome condensation result in?
dramatic reduction in chromosome length
What is sister chromatid resolution & what is is mediated by?
untangling of sister chromatids; topoisomerase II
What triggers chromosome condensation?
CDK1
What inhibits separase?
binding of securin or by phosphorylation
What are some steps checked at each checkpoint?
damage to chromosomal DNA
incomplete DNA replication
incomplete chromosomal alignment
What are the 2 categories of surveillance genes?
genes promoting cell proliferation genes (encode of proteins that promote division)
anti proliferation genes (encode for checkpoint proteins)
Daughter cells for mitosis
2 that are diploid (genetically identical)
Daughter cells for meiosis
4 that are haploid (genetically different)
Which cells does mitosis happen in?
somatic cells
Which cells does meiosis happen in?
germline cells
What hormone stimulates red blood cell formation?
erythropoietin (Epo)
When & where is erythropoietin synthesized?
synthesized in the liver & kidney in response to low OXYGEN levels
What transcription factor coordinates many cellular responses to low O2?
Hif-1alpha
When is Hif-1alpha protein present?
only at low O2 levels
(gets degraded at high O2 levels)
Defime chronobiology
the study of the biology of circadian rhythms
What organisms exhibit circadian rhythms?
all eukaryotes & some prokaryotes
What is the most powerful external cue for the circadian rhythm?
dark-light cycle
What are other cues that impact circadian rhythms?
medication
temp
social interactions
exercise
eating / drinking
weather
In mammals, what functions as the master clock or pacemaker for circadian rhythms?
suprachiasmatic nucleus (SCN)
Melatonin production is inhibited by what?
light
Melatonin production is stimulated by what?
darkness
What secretes melatonin?
pineal gland
When is cortisol hormone the highest?
during daytime
What is the primary disease of circadian rhythms?
narcolepsy
What are some other diseases accompanied by alterations to circadian rhythms?
alzheimers & autism spectrum
Cells respond to tension across what?
intercellular adherents junctions
What modulates cell growth & differentiation?
hippo pathway
How does hippo signaling & YAP-TAZ look when there are actin stress fibers?
hippo signaling is off
YAP-TAZ is ACTIVE in nucleus
How does hippo signaling & YAP-TAZ look when there are NO actin stress fibers?
hippo signaling is on
YAP-TAZ is INACTIVE in cytosol
What is required for YAP nuclear localization?
actin stress fibers
Where is YAP-TAZ in the outer cells of morula?
in nucleus because cells are dividing (hippo pathway is off)
Where is YAP-TAZ in the inner cells of morula?
in cytoplasm because cells are not dividing
What 2 systems make up the nervous system?
central & peripheral nervous system
(CNS & PNS)
What 4 areas make up the CNS?
spinal cord, brain stem, cerebellum, cerebrum
What does the spinal cord do?
relays sensory & motor info
What does the brainstem do?
controls basic functions such as breathing & HR
What does the cerebellum do?
coordinates movements
What does the cerebrum do?
controls higher functions like language, learning, memory, & emotion
What do glial cells do?
provide support to nerve cells
theres more of them than neurons in the brain
How much of the total body energy does the brain consume?
20%
What 4 lobes make up the cerebrum (brain)?
frontal, temporal, parietal, occipital
What does the frontal lobe do?
involved in analytical stuff such as problem solving, language, & impulse-control
What does the temporal lobe do?
involved in auditory processing, memory, & emotion
What does the parietal lobe do?
involved in sensations such as touch, taste, temp, & movement
What does the occipital lobe do?
involved in vision
What does the PNS consist of?
somatic & autonomic systems
What does the somatic system do?
involved with the conscious control of the body
What does the autonomic system do?
controls body functions that happen without us thinking about it
What are the two types of the autonomic nervous system?
sympathetic & parasympathetic nervous system
What does the sympathetic nervous system do?
stimulates the fight or flight response
regulates HR, respiration rate, & pupillary response
What does the parasympathetic nervous system do?
stimulates the rest & digest response
Where is the sympathetic nervous system located?
near the thoracic & lumbar regions
Where is the parasympathetic nervous system located?
between the spinal cord & the medulla
What 2 cells make up the nervous system?
neurons & glia
Types of glial cells in CNS
astrocytes
oligodendrocytes
microglia
ependymal glial cells
Types of glial cells in PNS
Schwann cells
satellite cells
What glial cells produce myelin sheaths in CNS
oligodendrocytes
What glial cells produce myelin sheaths in PNS
Schwann cells
What are the 3 functional classes of neurons
sensory (afferent) neurons
interneurons
motor (efferent) neurons
Describe sensory (afferent) neurons
detect stimuli & conduct signals TOWARDS the CNS
Describe interneurons
lie within the CNS
receives signals & decides where it goes
What class are the majority of neurons?
interneurons
Describe motor (efferent) neurons
lead to muscle cells
sends signals from CNS to the muscle or gland
Describe multipolar neurons
have 1 axon & multiple dendrites
What is the most common type of neuron?
multipolar
Describe bipolar neurons
have 1 axon & 1 dendrite
Examples of bipolar neurons
olfactory cells
sensory neurons
retina neurons
Describe unipolar (pseudounipolar) neurons
have a SINGLE process leading away from the soma
gets divided into dendrites later
Describe anaxonic neurons
have NO axon but multiple dendrites
do NOT produce action potentials
Where are anoxic neurons found?
brain
retina
adrenal medulla