Exam 2 Flashcards
What group of pathogens are the #1 cause of the common cold
Rhinovirus
Herpes occur in the….
mucocutaneous junction
Dermatome
is the skin innervated by a particular nerve
HHV4 is also called
Espstein-Bar virus
HHV4 causes
Burkitt’s lymphoma in immunocompromised and infectious mononucleosis
What is the function of reverse transcriptase
(a)RNA-directed DNA Polymerase aka will read ssRNA and make a copy of DNA
(b) RNAase, which will destory own RNA
(c) DNA Polymerase
What is the function of Integrase
Can integrate HIV genome into human/host genome
What is the function of protease
cuts the concatamer peptide
Virus defintion
are obligate intracellular parasite
Growth in virus is defined as
growth in population
Virion
individual viral particle
Nucleocaspid
contain the genome and capsid portion of the envelope virus
naked virus components
genome and protein capsid
Envelope virus components
genome and protein capsid and envelope( has the glycoprotein)
Envelope Virus characteristic
less infectious b/c required a specific host and envelope itself is unstable outside the host
What do naked viruses use to bind/enter the host
capsomere
What do envelope viruses use to bind/enter the host
glycoproteins
range is determined by
host’s proteins
lytic and lysogeny cycle take place in only
bacteriophage!
Mechanism of entry
1.) Direct penetration - complex bacteria
2.) membrane fusion - envelope virus only
3.) Endocytosis- naked and envelope
Direct penetration
Virius enjects gemone into host , method is specific to naked virion
Mechanism of exit
1.) Lysis-
2.) Budding-
3.) exocytosis-
Budding
when new viral participles are made within the cell, glycoproteins are made on the cell membrane.
what is the difference between membrane fusion and endocytosis
Membrane fusion refers only to envelope viruses, while endocytosis refers to both envelope and naked viruses. The cell engulfs the virus
exocytosis
The virion is housed within a membrane in the cytoplasm of the host cell & then fuses with the host membrane
what year was the influenza flu
1918
characteristics of influenza
- has ssRNA and is segmented into 8 pieces
-can effect many aka board host
-stable envelope virus! meaning it can live outside of the host aka fomite(lives on surfaces)
What are the name glycoproteins on influenza
Hemagglutinin (HA): gets virion into the host cell
Neurominidase (NA): gets virion out of host cell
For humans HA1-HA4 attack…
alpha 2,6 glycosides linkages
For birds HA5-HA16 attack…
alpha 2,3 glycosides linkages
For piggies what strains infect pigs
All H1-H16 :(
Specifically, what two sugars do the strains attack?
salic acids and galactose. Strains binds to the bond!
Antigenic Drift
Slow and gradual change in HA and NA b/c of mutation over time. There is some degree of immunity b/c new flu variation aren’t always different from pervious version of seasonal flu
Antigenic Shift
Sudden and drastic changes in HA and NA due to reassortment in a common cell. There is no residual immunity, which results in more severe illness ex. influenza
HIV
Human immunodeficiency virus
HIV came from
SIV= Simian immunodeficiency virus
HIV is considered a emergency disease
b/c its technically new
What are the glycoproteins in HIV
gp120 and gp41
HIV Characteristics
Envelope virus- fragile w/out host cell
RNA Genome- 2 segmented
no proofreading
glycoproteins
how do the HIV glycoproteins bind to host cells
gp 120 binds to CD4 receptors on T-cells, which then CXCR4 proteins also come to bind. The head of gp120 is torn off, exposing gp41. gp41 onsets into the host membrane fusing into the cell. The nucleocapsids empties into the cell cytoplasm, where it will uncoat
what are the 3 enzymes in HIV
protease, transcriptase, integrase
what is the difference b/n sign and symptons
signs are observable by others and symptoms are subjective to the patient
SARS-COV-2 Virus Characteristics
- envelope- doesn’t follow stereotype aka needs host
-RNA genome
-has proofreading abilities!
what are the 3 criteria to diagnose aids
- HIV positive
-T4 cells under 200
-combinations of diagnostic opportunistic infection
keep in mind that pathogens will also behave differently*
Common cold don’t have a intermediate host
TRUE
What is the intermediate host for SARS-COVID?
Civet
What is the intermediate host for MERS
camel
What is the intermediate host for Covid-19
pangolins
what does proofreading ability in a virus tell us?
If there is proofreading ability then there is low probability of mutation, therefore less variants!
What are the glycoproteins for COVID
S glycoproteins trimer
What proteins do S glycoprotein trimer(spike proteins bind to)?
ACE 2
What is the first virus to cause cancer?
HERPES, specifically HHV4 aka Epstein-Barr
HHVI causes
cold sores
HHV2 causes
lies dormant in cells bodies
HHV3
Varicella Zoster Virus
Another name for Varicella Zoster Virus
Chicken pox
If you had chicken pox as a child there is 20% it will appear in adulthood it is known as
Herpes Zoster aka shingles
Measles cause
encephalitis which is swelling in the brain. This eventually leads to death
Rash causing infections
HHV3(chicken pox)
Mumps
Measles
Rubella
Measles
caused by MeV virus
has a Ro=18
highly contagious
1 in 3 out of 1000 die from measles
Measles is dignosed
by Rubeola–Koplics spots
Rubella diagnosed by
flat spots
mumps
caused by MuV
spreads through the air
mumps causes
meningitis
deafness and/or blindness
inflammation in the testis
Mumps is diagnosed by
parotitics- inflammation of salivary glands
Rubela
caused by RuV
acts like a teratogen- causes birth defects like CRS
Rubella is also known as
“german measles”
Papillimovirus also known as
warts
NON rash causing infections
Papillimovirus
Polio
Variola Major
Variola Major also known as
small pox
how many Papillimovirus infect humans
100!!!
how many Papillimovirus cause genital warts
4!
what was the first disease to be eradicated
Variola Major
How many coronavirus can effect humans?
7 ( will be on exam)
Criteria for eradicating pathogens
1.) Humans must be the only host
2.) no asymptomatic symptoms
3.) Symptoms have to appear before contagion
4.) Vaccines needs to be cheap and good
Why must Humans be the only host?
Less host means less mutations= less variants, therefore easier to control
why must there be “no asymptomatic symptoms”
showing no symptoms can still transmit the pathogen, making detecting and controlling the disease harder
Poliomyelitis aka polio caused by
poliovirus
effects of polio
loss of muscle control
is polio eradicated?
in 2010 it was believed to been eradicated, however, it is still prevalent in other countries
Paillomarivirus can causes what type of cancers
cervical cancer for women
rectal and oral cancers for men
which is why its important for teens to get HPV vaccines
what are the inputs for glycolysis?
1 glucose molecule (C-C bonds)
2 ATP
2NAD
what are the outputs for glycolysis?
2 pyruvate
2NADH
4ATP(2 ATP net)
what are the inputs for the prepping of pyruvate
2 pyruvate (2 C-C bonds)
what are the outputs for the prepping of pyruvate
2 Acetyl CoA
2 Co2
2NADH
what are the outputs for the KREB
6 NADH
2ATP
2FADH
what are the inputs for the KREB
2 Acetyl CoA (2 C-C bonds)
Why do Prokaryotic make 38ATP and Eukaryotic make 36ATP
In prokaryotic there are no membrane bounds organelles, meaning less energy is used to enter. Eukayrotics on the other hand HAVE membrane-bound organelles and it takes time and energy to enter organelles
Under Idea conditions, the complete anaerobic fermentation of one glucose will yield the net gain of..
2 ATP molecules
Extremophiles
bacteria that thrive at or requires various extreme conditions
examples of extremophiles
Thermophile, hyperthermophiles, psychrophiles
Psychrophiles
thrive on low temperature i.e 5C
Thermophiles
thrive at 80C
Hyperthermophilies
thrive at 110C
Acidophiles
need low Ph(acidic)
Alkaliphiles
need very high ph (basic)
Halophiles
require high salt concentration
Barophiles
require high pressure
Fastideous
bacteria that require, usually multiple, specific nutrients in order to grow
Permissive
Bacteria are versatile about the nutrients they need to grow, since they can synthesise many of their own
Auxotroph
Bacteria cannot synthesize one particular nutrient. Usually a human-made mutant strain
Wild-type
non-mutant strains of bacteria. Occurs in nature
Differential Media
Culture media allows us to distinguish among microorganisms based on their metabolic traits. Many species grow one the plate, but will look different
Selective media
culture media provides some advantage to certain species but not others. This leads to some species growing and other no
Complex Media
Culture media is made from whole biological sources, like blood or animal organs. The exact chemical composition of the ingredients is unknown and potentially variable