Exam 2 Flashcards
Ch. 25, 27, 28, 29, 30
How many eons is geologic time divided into
four eons
How are eons subdivided
- Subdivided into eras
*Eras are subdivided into periods
How long ago did a meteor hit the earth
4.6 million years ago
Geologic Record
standard time scale dividing Earth’s history into 4 eons
What are the four geological eons
- Hadean
- Archaean
- Proterozoic
- Phanerozoic
Which eon encompasses most of the time that animals have existed on Earth
The Phanerozoic Eon
What eras are in the Phanerozoic eon
- Paleozoic
- Mesozoic
- Cenozoic
What can cause extinction
Extinction can be caused by changes to a species’ environment
Mass Extinction
When the rate of extinction has increased dramatically
In each of the five mass extinction events, more than _______ of Earth’s species became extinct
50%
Permian Extinction
- The boundary between the Paleozoic and Mesozoic eras 251 million years ago
- Caused the extinction of about 96% of marine animals
- Happened in a span of 500,000 years
What contributed to the Permian Extinction
- Intense volcanism
- Global warming from large amounts of CO2 from the volcanos
Reduced Temperature
Oceanic Anoxia
Oceanic Anoxia
When large parts of the ocean were depleted of oxygen creating toxic water
Cretaceous Extinction
- 65.5 million years ago
- Separates the Mesozoic from the Cenozoic era
- about 50% of all marine species, plants, animals, and most dinosaurs went extinct
What caused the Cretaceous Extinction
- Meteorite impact
- Meteorite disturbed global climate
- Possible Meteorite collision
How does extinction rate increase
It increases when global temperatures increase
Plate Tectonic Theory
it’s believed that Earth’s crust is composed of plates floating on Earth’s mantle
What are the consequences of the supercontinent Pangaea forming
- Ocean basins deepened
- Less shallow water habitats
- Colder and drier climates inland
When did life emerge on Earth
- Two billion years ago during the Proterozoic eon
- When Rodinia formed
What period showed diversification of multicellular organisms
The Cambrian period
What compounds/elements were on early Earth’s atmosphere
- Carbon Dioxide (CO2)
- Nitrogen Gas (N2)
- Water Vapor (H2O)
- Hydrogen Gas (H2)
- other Sulfur, Nitrogen, and Carbon compounds
What may have been the first genetic material on Earth
RNA
Microfossils
Fossilized forms of microscopic life
Stromatolite
Mats of cyanobacterial cells that trap mineral deposits
Biomarkers
Evidence of ancient organic molecules
What domains did life evolve into
- Eubacteria
- Archaea
- Eukaryotes
Why were prokaryotic cells undiscovered for most of human history
They were microscopic
Who suggested that disease was caused by unseen organisms
Girolamo Fracastoro
* Italian physician
* 1546
Who was the first to observe and accurately describe microbial life
Antony Van Leeuwenhoek
What microscope allowed the study of cell substructure
Modern electron microscope
_____ was the oldest, structurally simplest, and most abundant form of life
Prokaryotes
What two domains do Prokaryotes fall into
- Bacteria
- Archaea
What are characteristics of Prokaryotes
- Unicellular
- Small cell size
- Have a Nucleoid
*Can Divide Cells - Genetic Recombination
- Internal Compartmentalization
- Flagella
- Metabolic Diversity
Unicellular
Single-celled
Biofilm
Prokaryotes that are capable of forming complex communities of different species
Nucleoid
A single circular chromosome made up of DNA and histone like proteins
Genetic Recombination
Exchanging genetic material through horizontal gene transfer
How do Bacteria and Archaea differ
- Plasma membranes
- Cell walls
- DNA replication
- Gene expression
____ have peptidoglycan on their cell wall
Bacteria
____ do not have peptidoglycan on their cell wall
Archaea
What are the three basic shapes of prokaryotic cells
- Bacillus (Rod Shaped)
- Coccus (Spherical/Oval Shaped)
- Spirillum (Long and helix shaped)
Gram Postive Bacteria
thick peptidoglycan wall
* Stain purple
Gram Negative Bacteria
Contain less peptidoglycan
* Common
* Can be stained with red counterstain to appear dark pink
S-Layer
rigid layer found in some bacteria and archaea
* can be found on the outer membrane layer
Capsule
Gelantinous layer found in some bacteria
Flagella
- Helps the bacteria move like a propeller
Pili
- short, hairlike structures
- Found in some gram negative bacteria
- Aid in attachment
Endospores
Thick-walled bacterial spore that can survive harsh environmental stress
* Once conditions improve they can germinate
____ contain Ribosomes
Prokaryotes
Do prokaryotes reproduce sexually
No, they exchange DNA between different cells of species
What ways do prokaryotes exchange DNA
Exchange DNA through Horizontal gene transfer
* Transformation
* Transduction
* Conjugation
Transformation Gene Transfer
DNA that is released from a dead cell is picked up by another live cell
Transduction Gene Transfer
When transferring DNA requires cell-to-cell contact or a viruses
Conjugation Gene Transfer
When genes move form one cell to another
Artificial Transformation
Some species don’t naturally undergo transformation and need to be done by scientists in a lab
Ex. E. Coli
Generalized Transduction
Transferring of any genes can be done between cells
* A virus packages bacterial DNA and transfers it into another bacteria’s DNA
Specialized Transduction
When a bacteriophage transfer a specific bacterial gene from one bacteria to another
In Conjugation, ____ may encode functions not necessary to the organism, but may provide a selective advantage
Plasmids
F+ _____ do/don’t contain plasmids
do
F- _____ do/don’t contain plasmids
don’t
Explain F plasmid transfer
1) F+ donor cell produces the appendage (F pilus) that connects to the F- recipient cell
2) F pilus pulls the cells together creating a conjugation bridge allowing the transfer of genetic material
3) The F+ plasmid is copied through rolling circle replication resulting in two F+ donor cells
Hfr Cell
- High Frequency of Recombination (Hfr)
- A cell with an integrated F+ plasmid
An F plasmid ____ can/cannot excise itself by reversing the integration process
can
An _____ inaccurate/accurate excision may occur picking up some chromosomal DNA (F plasmid)
inaccurate
R Plasmids
Some conjugative plasmids can acquire antibiotic resistance genes
How do conjugative plasmids become R plasmids
They acquire genes through transposable elements
Auxotroph
A bacteria that acquires a mutation that results in an inability to make an essential nutrient
* Cannot survive on minimal media
Prototrophs
Bacteria that can grow on minimal media
What does CRISPR stand for
Clustered Regularly Interspaced Short Palindromic Repeats
CRISPR
A form of adaptive protection against viral infections that are in the genome structures of many prokaryotes
Autotrophs acquire carbon from
inorganic carbon dioxide (CO2)
_____ obtains energy from oxidizing inorganic substances
Chemolithoautotrophs
____ obtains carbon in reduced forms
Heterotrophs
_____ transform energy by harvesting light
Photoheterotrophs
____ obtains organic carbon made by other organisms
Photoheterotrophs
_____ obtain carbon atoms and energy from organic molecules
Chemoheterotrophs
______ have greater diversity to perform respirations and fermentations
Prokaryotes
______ are restricted to ____ electron donors and oxygen as a terminal electron acceptor
eukaryotes; organic
_____ _____ can metabolize _____ and other compounds to recycle electron donors
Prokaryotic fermentations; pyruvate
Decomposition
Nutrients are released to the environment from dead organisms
Fixation
oxidized nutrients are made available for use by heterotrophs
What do photosynthesizers fix
They fix carbon into sugars
_____ _____ added oxygen to the air
ancient cyanobacteria
What do Nitrogen fixers reduce
They reduce nitrogen to ammonia (NH3)
There’s a ___ ____ association between ____ and ____
mutually beneficial
plants
bacteria
Not all plant prokaryote interactions are mutually beneficial. Some can establish a ______ ______ causing harm to important crops
Parasitic relationship
There are _____ relationships between mammals and _______
beneficial
prokaryotes
Bioremediation
The use of organisms to remove pollutants from water, air, and soil
Biostimulation
The addition of nutrients to a biome to encourage growth of naturally occurring microbes that can degrade oil spills
Halorespiration
When bacteria remove halogenated compounds from toxic wastes
How does bacteria cause disease in humans
- Bacteria gain entry into the body
- They colonize at the site of infection
- Then invade the immune system
- They spread to other sites in the body
- Causing damage by triggering our inflammatory responses to foreign bacteria or they produce toxins
What bacteria is in Tuberculosis (TB)
Mycobacterium Tuberculosis
What does the Mycobacterium Tuberculosis affect
Affects the respiratory system and it’s easily transferred from person to person through the air
What bacteria are in ulcers
Helicobacter Pylori can cause stomach ulcers
How do you treat stomach ulcers
You reduce the amount of stomach acid
Helicobacter Pylori can also cause _____, stomach ____, and _____
gastritis
cancer
Lymphoma
Gonorrhea is caused by
Neisseria Gonorrhoeae
How is Gonorrhea transmitted
Transmitted through exchange of body fluids
What bacteria causes Chlamydia and what can it cause
Chlamydia Trachomatis
* Can cause pelvic inflammatory disease and heart disease
What is the silent STD
Chlamydia
What bacteria causes Syphilis
Treponema Pallidum
How is syphilis transmitted
Transmitted through sex or contact with open chancre
What are the stages of syphilis and how infectious are they
1) Chancre - highly infectious
2) Rash - Infectious
3) Latency - not infectious but attacks internal organs
4) No damage - nerve damage, heart disease, mental deficiency
How do Eukaryotic cells differ from prokaryotic cells
- They have a complex cytoskeleton
- Compartmentalization (Nucleus and organelles)
Which STD’s can be passed onto a mothers baby
- Syphilis
- Gonorrhea
When did eukaryotes appear in microfossils
about 1.5 billion years ago
How did the nucleus and endoplasmic reticulum emerge
They arose from infoldings of a prokaryotic cell membrane
How did mitochondria form
Aerobic bacteria was engulfed by larger bacteria making the mitochondria
How did chloroplasts form
when a larger bacteria engulfed a smaller photosynthetic bacteria forming a chloroplast
_____ came from a single line of cyanobacteria
Chloroplasts
Secondary Endosymbiosis
When brown algae obtained their chloroplasts by engulfing one or more red algae that already had chloroplasts
Endosymbiosis is supported by what evidence
- DNA inside mitochondria and chloroplasts are similar to DNA in bacteria
- Ribosomes inside mitochondria are similar to bacterial ribosomes
- Chloroplasts and mitochondria replicate by binary fission like prokaryotes
______ carries its genes on a single circular DNA molecule
Prokaryotes
_____ carries its genes on multiple chromosomes, which are usually present in pairs
Eukaryotes
_____ and _____ developed to separate chromosomes and other cell contents during cell division
Mitosis
Cytokinesis
_____ are the most diverse of the four eukaryotic kingdoms
Protists
Protists vary considerably in
- Unicellular, Colonial, and multicellular groups
- size
- Nutrition
_____ are paraphyletic
Protists
What are the six eukaryotic supergroups
- Excavata
- Chromalveolata
- Archaeplastida
- Rhizaria
- Amoebozoa
- Ophisthokonta
Protists are present in ____ _____ eukaryotic supergroups
all six
What type of cell surfaces do protists possess
- Some have plasma membranes
- Most have an extracellular matrix
- Some have strong cell walls (diatoms and silica shells)
Protist Cyst
A dormant cell with resistant outer covering that’s used to survive and reproduce asexually in harsh conditions
What are ways a protist moves
- Flagella
- Cilia
- Pseudopods
_____ (False Feet) are the chief means of locomotion among amoebas
Pseudopods
How do Protists get their energy
- They are autotrophs
- Some photosynthetic
- Some Chemoautotrophic
- They are Heterotrophs
- Phagotrophs
- Mixotrophs
Phagotroph
organisms that ingest particles of food in vesicles called food vacuoles
Mixotrophs
Protists that are both phototrophic and heterotrophic
Protists typically reproduce _____
asexually
Mitosis creates two _____ _____ daughter cells
equal size
______ creates one daughter cell that’s _____
Budding
smaller
Schizogony
cell division preceded by several nuclear divisions (produces several daughter cells)
The advantage of sexual reproduction is that it allows for frequent _____ _____
genetic recombination
The great advantage of _______ is that it fosters specialization
multicellularity
Specialization
When cells devote all of their energy to one function in a tissue and other cells to other functions
Like a trade specialty
What are the organisms classified under the supergroup Excavata
- Diplomonads
- Parabasalids
- Euglenozoans
What do the excavata supergroup organisms have in common
They share similarities in cytoskeletal features and DNA sequences
Diplomonads are characterized as
- Unicellular
- Don’t have a functional mitochondria
- Two nuclei
What’s an example of a diplomonad
Giardia Intestinalis
Giardia Intestinalis
a parasitic diplomonad that can pass from human to human via contamined water
Distinguishing features of Parabasalids
- Have a undulating membrane for locomotion
- Have flagella
- Have a semifunctional mitochondria
______ have a symbiotic relationship with cellulose-degrading bacteria
Parabasalids
Some _____ live in the guts of termites
parabasalids
Trichomonas vaginalis causes trichomoniasis, a common STD in humans originating from _______
Parabasalids
What are the differences between diplomonads and parabasalids
- Parabasalids have a semifunctional mitchondria and have one nucleus per cell
- Diplomonads don’t have a functional mitochondria and have two nuclei per cell
What are Euglenozoans distinguishing features
- Their bodies change shape, alternating between being stretched out and being rounded
Why can euglenozoans change shape
They lack a cell wall and instead have strips of protein encircling the cell
* The strips can slide providing flexibility
_____ are among the earliest eukaryotes to possess mitochondria
Euglenozoa
What are considered euglenozoans
- Free-living euglenids
- Parasitic kinetoplastids
______ of euglenids have ______ and are ______; the others ______ chloroplasts, ingest their food, and are ______
1/3
chloroplasts
autotrophic
lack
heterotrophic
Euglena have two unequal ______ attached at the reservoir
flagella
How does reproduction occur in euglenids
Reproduction occurs asexually and by mitosis
______ ______ collect excess water from all parts of the organism and empty it into the reservoir in _______
Contractile vacuoles
Euglena
A light-sensitive _____ helps photosynthetic ______ move toward light
Stigma
Euglenids
Cells of ______ contain numerous small _____
Euglena
Chloroplasts
How did euglenid chloroplasts evolve
They evolved from a symbiotic relationship through ingestion of green algae
What’s the second major group in euglenozoa
Kinetoplastids
What are distinguishing characteristics of Kinetoplastids
- Have a unique, single mitochondrion in each cell
What’s an example of a kinetoplastid
Trypanosome
Trypanosome
a group of kinetoplastids that cause many serious human diseases
What are examples of diseases that Trypanosomes can cause
- Trypanosomiasis
- Chagas
Trypanosomiasis
- African sleeping sickness
- Causes extreme lethargy and fatigue
How is Chagas Disease contracted
caused by skin contact with urine or blood of infected wild animals
What supergroups are in the Chromalveolate group
- Stramenopila
- Alveolata
Name the organisms in the alveolate group
- Dinoflagellates
- Apicomplexans
- Ciliates
What do the organisms under the alveolates clade have in common
They have flattened vesicles called alveoli
What’s the difference among the alveolates
They have a diverse modes of locomotion
What are the distinguishing features of Dinoflagellates
- Photosynthetic
- Two flagella
- Some are luminescent
The _______ chromosome is unique among the eukaryotes because their DNA is not generally complexed with histone proteins
Dinoflagellate
Most dinoflagellates contain chlorophylls ___ and ___ in addition to ______
a
c
carotenoids
How do dinoflagellates reproduce
They produce asexually
What happens when toxic dinoflagellates are abundant in the ocean
many fishes, birds, and marine mammals may die
Apicomplexans
Spore forming parasites of animals
Apical Complex
A unique arrangement of organelles at one end of a apicomplexan that allows the apicomplexan to invade its host
Give an example of an apicomplexan
Plasmodium (Responsible for malaria)
How does Toxoplasma gondii invades epithelial cells of human guts
They use apical complex
What does Toxoplasma cause in humans
Causes infections in humans who are immunocompromised
* Can harm fetus
What are Ciliates distinguishing features
- Alot of Cilia in longitudinal rows or spirals around cell
- Cilia beat in coordination
- Micronucleus
- Macronucleus
- Food Vacuoles
- Contractile Vacuoles
Micronucleus
used as a germ line for sexual reproduction ( NO DNA Transcribed)
Macronucleus
DNA is transcribed for daily activities of organisms
Food Vacuoles
Digestion of food
Contractile Vacuoles
Regulate water balance