Exam 1 Flashcards
a bacterial, viral, or fungal agent of disease
pathogen
a method to amplify DNA in vitro using many cycles of DNA denaturation, primer annealing, and DNA polymerization using a heat-stable polymerase
polymerase chain reaction (PCR)
a living organism that requires a microscope to be seen
microbe
the sum of all genomes of all members of a community of organisms
metagenome
a noncellular particle containing a genome that can only replicate inside of a cell
virus
cells lacking a nucleus; includes bacteria and archaea
prokaryotes
cells with a nucleus
eukaryotes
the three domains
bacteria, archaea, eukarya
the total genetic information contained in an organism’s chromosomal DNA
sequence of all the nucleotides in a haploid set of chromosomes
genome
what does the genes in a microbe’s genome and the sequence of DNA tell us about
how that microbe grows and associates with other species
microbial capabilities are defined by genome sequences
organisms exist in both _________ and ___________ forms
macroscopic and microscopic
major categories of microbes include
bacteria
archaea
microbial eukaryotes
viruses
microbes may grow in
communities, such as a biofilm
includes all the microbes that live on or in us
may be commensalism or mutualism (mostly)
mostly harmless microbes but can cause problems sometimes
the human microbiome
what parts of the body would not be included in the human microbiome
blood, cerebrospinal fluid, internal organs
true or false: the composition of the human microbiome is unique to each individual
true
what are the 3 domains
bacteria, archaea, eukarya
humans harbor diverse species from a limited number of __________: Actinobacteria, Bacteriodetes, Firmicutes, Fusobacteria, and Proteobacteria
phyla
what do microbiome differences arise from
genetics, age, lifestyle, environment, etc
proportions of microbes in the microbiome are heavily influenced by
anatomical site
your microbiome begins developing at birth and reaches a ________ state by age 3
stable
what are some factors that can fluctuate your microbiome
puberty, weight changes, diet, pregnancy, stress, cohabitation, new pets, job changes, children, medications, sports, travel, menopause
an imbalance in the microbial community that is associated with diseases
dysbiosis
animals that are used to direct physiological impact of the microbiome, allowing us to prove causation
gnotobiotic animals
all microbes are known, includes germ-free
gnotobiotic
an increase in Firmicutes would result in
obesity
a decrease in bacteroidetes is associated with
obesity
a decrease in verrucomicrobia is associated with
obesity
an increase in actinobacteria is associated with
obesity
a decrease in F. prausnitzii results in
obesity
disadvantages of using a germ-free animal
- more susceptible to pathogens
- poorly developed immune system
- lack key nutrients
- lower cardiac output, thin intestinal walls, and altered behavior
failure of immunoregulation is due to inadequate exposures to the microorganisms that drive development of the immune system
old friends hypothesis
the process by which pathogens produce disease
pathogenesis
a microbe that causes disease
pathogen
causes disease in a healthy host; can breach host defense mechanisms
primary pathogens
causes disease only in immunocompromised hosts or in specific circumstances
opportunistic pathogens
started the notion of handwashing
Ignaz Simmelweis
theory that states that microbes can cause disease
germ theory
koch’s postulates establish a __________ relationship between a microbe and a specific disease
causative
koch’s postulates (4)
- the microbe is found in all cases of the disease but is absent from healthy individuals
- the microbe is isolated from the diseased host and grown in pure culture
- when the microbe is introdued into a healthy, susceptible hsot, the same disease occurs
- the same strain of microbe is obtained from the newly diseased host
a complex bidirectional network of communication between the Central Nervous System, the intestine, and the intestinal microbiota
microbiome-gut-brain axis
which cranial nerve is an important part of the microbiome-gut-brain axis
the vagus nerve
neurochemicals made by the brain initiate efferent vagus nerve impulses that travel from the brain to the gut, whereas gut bacteria make neurotransmitter-like chemicals that acan fire afferent signals back along the axis to the brain
the serial passage of a pathogenic organism from an infected individual to an uninfected individual, thus transmitting disease
chain of infection (transmission of disease)
a culture containing only a single strain or species of microorganism
pure culture
a visible cluster of microbes on a plate, all derived from a single founding microbe; usually consists of a clone, except for infrequent mutations
colony
exposure of an individual to a weakened version of a microbe or microbial antigen to provoke immunity and prevent development of disease upon reexposure
vaccination
a body’s resistance to a specific disease
immunity
an organism’s cellular defense against pathogens
immune system
the stimulation of an immune response by deliberate innoculation with a weakened pathogen, in hopes of providing immunity to disease caused by the weakened pathogen
immunization
a chemical that kills microbes
antiseptic agent
free of microbes
aseptic
a molecule that can “kill” or inhibit the growth of selected microorganisms
antibiotic
provide a set of criteria to establish a causative link between an infectious agent and a disease
Koch’s postulates
established the practice of vaccination, or inoculation with cowpox to prevent smallpox
Edward Jenner
developed the first vaccines that were based on attenuated strains
Louis Pasteur
showed that antiseptics could prevent the transmission of pathogens from doctor to patient
Ignaz Semmelweis and Joseph Lister
discovered that the Penicillum mold generates a substance that kills bacteria
Alexander Fleming
purified the substance penicillin, the first commercial antibiotic to save human lives
Howard Florey and Ernst Chain
discovered viruses as filterable agents of infection that aren’t cells
Dmitri Ivanovsky and Martinus Beijerinck
first crystallized viral particles
Wendell Stanley
a period of the infection process during which a pathogenic agent is dormant in the host and cannot be cultured
latent state
an organism’s ability to cause disease
pathogenicity
how easily an organism causes disease
infectivity
a measure of the degree, or severity of disease
virulence
a measure of virulence; the number of bacteria or virions required to kill 50% of an experimental group of hosts
Lethal Dose 50% (LD50)
the route of transmission an organism takes
infection cycle
two main forms of transmission
horizontal transmission and vertical transmission
a mode of transmission in which an infectious agent is transferred from one person or animal to the next
horizontal transmission
a mode of transmission whereby the agent is transferred from an infected parent to offspring
vertical transmission
how can vertical transmission occur in humans
transplacental transmission or during birth
the process by which certain pathogens in maternal blood can pass through the placenta and infect the fetus
transplacental transmission
modes of horizontal transmission (5)
direct contact
airborne transmission
indirect contact
vehicles
vectors
pathogens that spread horizontally from person to person by physical contact with skin, blood, or bodily fluids
direct contact
in disease, the transfer of a pathogen via dust particles or on respiratory droplets produced when an infected person sneezes or coughs
airborne transmission
a broad term that covers all types of transmission that are not directly passed from person to person (fomites, food, and water)
indirect contact
an inanimate object on which pathogens can be transmitted from one host to another
fomites
the transfer of a pathogen when an infected person deposits it on a surface or in food or drink that another person touches or consumes
vehicle transmission
an organism that maintains a virus or bacterial pathogen in an area by serving as a high-titer host
reservoirs
a vector that conveys pathogens to a susceptible individual or food without the pathogen needing to replicate in the vector
mechanical vector
an infectious disease that is primarily seen in animals but can be transmitted to humans either by vector or other means
zoonotic disease
the transfer of a pathogen from parent to offspring via infection of the egg cells
typically seen in insects
transovarial transmission
a person who harbors a potential disease agent but has no symptoms of disease
asymptomatic carrier
portals of entry
respiratory
oral
ocular
urogenital
parenteral
wound
agents that are transmitted only by mosquitos or ticks; injection into the bloodstream
parenteral route
applies when the immune response to a pathogen is a contributing cause of pathology and disease
immunopathogenesis
a trait of a pathogen that enhances a pathogen’s disease-producing capability
toxins, attachment proteins, capsules, and other devices used by pathoge
virulence factors