Epigenetic regulation of brain development and function Flashcards

1
Q

What is long term potentiation (LTP)? (3)

A
  • The strengthening of a synapse after frequent use
  • Molecular basis for memory formation
  • Involves upregulation of post-synaptic neurotransmitter receptors
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2
Q

How does LTP occur? (6)

A
  • Glutamate binds to post-synaptic receptors
  • Ca2+ influx
  • CaMKII activation (kinase)
  • CREB transcription factor phosphorylation
  • CRE-containing promoter activation
  • Altered synaptic gene expression and altered synapses
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3
Q

What is detected in response to synaptic activity-induced Ca2+ influx? (3)

A
  • Npas4 transcription factor expression (likely to be a target of phospho-CREB)
  • C-fos expression
  • Phospho-CREB
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4
Q

What induces C-fos expression? (4)

A
  • Synaptic activity (Ca2+)
  • BDNF
  • NT3/4
  • NGF
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5
Q

What is pentylenetetrazol (PTZ)?

A

Seizure-inducing agent which causes rapid neuronal firing

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6
Q

How does LTP increase post-synaptic receptors? (2)

A
  • Synaptic activity-dependent transcription factors recruited to target genes
  • Causes encoding of neurotransmitter receptor subunits/factors that mobilise receptor subunits to the synaptic membrane
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7
Q

What is the function of BDNF?

A

Required for activity-induced enhancement of axon outgrowth

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8
Q

Where are memories created and stored?

A

Hippocampus

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9
Q

How are histone modifications in memory studied? (8)

A
  • Contextual fear memories studied via behavioural assay
  • Put mouse in a new environment and administer a mild electric shock
  • Return to home cage
  • Return again to the new cage, mouse freezes as a memory response, measure the freezing response without shock
  • Longer freezing means stronger memory
  • Memory freezing response diminishes over time and eventually disappears
  • Collect tissues
  • Way to study memory formation and persistence
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10
Q

How is histone deacetylase 2 (HDAC2) involved in memory? (3)

A
  • HDAC2 knockout animals freeze for longer = stronger memory, also have more hippocampus dendrite growth
  • HDAC2 overexpression reduces freeze = weaker memory, have fewer dendrites
  • HDAC2-sensitive histone acetylation promotes memory formation and retrieval
  • HDAC2 specifically binds to promoters of neural genes implicated in synaptic regulation and deacetylates
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11
Q

What is CBP? (2)

A
  • CREB-binding protein
  • A histone acetyltransferase (HAT)
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12
Q

What is the structure of CBP? (3)

A
  • Histone acetyltransferase domain acetylates multiple lysines in core histones
  • Bromodomain binds to acetylated lysines in core histones
  • PHD finger binds to H3K4me (this modification often found alongside histone acetylation)
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13
Q

What is caused by CBP mutation? (2)

A
  • Mutations deactivate the histone acetyltransferase domain (can be nonsense, missense or deletions)
  • Heterozygosity for these mutations causes Rubinstein-Taybi syndrome (RTS) (severe neurological disorder)
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14
Q

What is Rubinstein-Taybi syndrome (RTS)? (2)

A
  • Severe neurological disorder which causes microcephaly, short stature, developmental delay, behavioural abnormality, mental impairment
  • Caused by heterozygous mutation in CBP gene
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15
Q

What is the role of CBP in memory formation? (3)

A
  • Heterozygous CBP knockouts have very poor freeze memory response
  • Also fail to activate c-fos in response to synaptic activity, also has lower acetylation
  • CBP promotes memory formation and retrieval, promotes H2B acetylation and facilitates transcription of the immediate-early activity-regulated gene c-fos in the hippocampus
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16
Q

What are examples of neural activity-induced genes downstream of c-fos? (4)

A
  • Grasp: metabotropic glutamate receptor regulation
  • Nptx2: regulates AMPA receptor clustering
  • Igf1: regulates brain development
  • Hdac9: regulates dendrite development
17
Q

What is the role of TET1 in memory formation? (3)

A
  • Increased methylation of Npas4 promoter in TET1 knockouts because can’t be demethylated
  • Coincides with reduced Npas4 transcription
  • Same seen in other synaptic-activity regulated genes
18
Q

What is the impact of TET1 knockout in the freeze memory assay? (3)

A
  • Knockout animals can initially remember the shock and show same initial freeze (TET1 not needed for memory formation and initial recall)
  • Greater persistent freeze response than wildtype when retesting the recall after a period of time (persistent DNA methylation consolidates the memory)
  • Therefore demethylation by TET1 promotes expression of neural activity-induced genes and loss of fear-conditioned memories