Epidemiology Flashcards
Transmission Basic reproductive number
R0 = BxCxD B = probability of transmission, C= exposure rate of susceptible partners, D= duration of infectious period
Transmission Basic reproductive number
R0>1 -> epidemic, goal control R0<1
Transmission STI transmission
B Probability of transmission: Infectivity (viral or bacterial load), biological interactions with other organisms, behaviours which increase/decrease risk (condom, anal vs vaginal intercourse. C Behavioural parameters: Rate of partner change, patterns of sexual mixing (gender, age, assortative (serosorting), disassortative (age gap). D Duration: Infectious period of organism, treatment seeking behaviour
Epidemiology Young and Solomon 10 questions
1 Is the study question relevant? 2 Does the study add anything new? 3 What type of research question is being asked? 4 Was the study design appropriate for the research question? 5 Did the study methods address the most important potential sources of bias? 6 Was the study performed according to the original protocol? 7 Does the study test a stated hypothesis? 8 Were the statistical analyses performed correctly? 9 Do the data justify the conclusions? 10 Are there any conflicts of interest?
Outbreak Definition
An outbreak is defined as the occurrence of more cases of an adverse health event than expected in a given geographic area over a particular period of time
Outbreak Case definition is key
Proven (confirmed), Probable (suspect) or Possible an example is: Possible = symptoms and likely epi risk, Probable = possible who died (ie cannot be confirmed) and Proven is Possible + micro confirmation (serology or culture depending on organism)
Outbreak Point source curve
An outbreak that results from exposure to the same harmful influence (eg infectious agent or toxin0 from the same source (eg contaminated water). Same source, exposed period is brief - all cases occur within one incubation period, eg Legionnaire’s disease, does not spread, eg food-borne disease
Outbreak Extended common- source
An outbreak that results from exposure over multiple incubation periods to the same harmful influence (eg infectious agent or toxin) from the same source (eg contaminated water) eg Cholera - does not spread, eg foodborne disease outbreak
Outbreak Propagated source
Increasing depth of wave transmission occurs from person-to-person rather than a common source and can last longer than common source outbreaks. May have multiple waves. Cases in one peak may be sources for cases in a subsequent peak. May have progressively taller peaks, an incubation period apart. if the incubation period and the infectious period are similar. (eg SARS-CoV-2)
Outbreak Intermittent source
Intermittent exposures: multiple peaks - length: no relation to the incubation period (reflects intermittent times of exposure) eg contaminated food product sold over period of time
Outbreak What would stop VHF happening again?
After the investigation was complete, the following recommendations were made: 1 Maintain active national surveillance for acute haemorrhagic disease. 2 Distribute pertinent information to medical and other personnel participating in surveillance. 3 Organise a national campaign to inform health personnel of the proper methods for sterilising syringes and needles. 4 Maintain a list of experienced Zairian personnel so that appropriate action can be taken without delay in the event of a new epidemic. 5 Maintain a stock of basic medical supplies and protective clothing for use in suspected outbreaks. 6 Keep plasma from immune donors in readiness and obtain further information concerning the effectiveness of this treatment
Outbreak 12 Steps to Outbreak Response
1 Prepare for field work - identify an investigation team, mobilise appropriate resources. 2 Establish the existence of an outbreak/epidemic. 3 Verify diagnoses of cases. 4 Establish a working case definition. 5 Systematic case finding to identify additional cases. 6 Conduct descriptive epidemiological studies (time, place, person). 7 Develop hypotheses. 8 Evaluate hypotheses (often with a case-control study). 9 If required, reconsider/refine hypotheses and do additional studies to test them. 10 Implement control and prevention measures (as early as possible) 11. Communicate findings. 12 Institute surveillance (Team/resources, identify, verify diagnoses, working case definition, case finding, descriptive epi (time place person), develop hypothesis, evaluate hypothesis, refine hypothesis, control measures, communicate, surveillance)
Outbreak Case control study
A case-control study is designed to help determine if an exposure is associated with an outcome (ie disease or condition of interest). Good for outbreaks, quick, cheap, simple.
Person, place and time Epidemiology
The distribution and determinants of disease (or health): how much [condition] is there, who gets it? We’re also interested in natural history: what happens to people with [condition]. We might be interested in trying to establish causation: what factors influence who gets [disease], what is the cause of this?. We might want to evaluate interventions to treat individuals or control disease: is treatment A better than treatment B? does this intervention prevent this disease?
Person, place and time Key points
When thinking about disease in populations, and when considering whether you have a real outbreak on your hands: 1 the proportion of the population with the disease is more useful than just the absolute numbers (though both are useful and absolute numbers are obviously important for planning healthcare delivery) 2 ‘what is the denominator’ (what is the size of the population which produced the cases?)
Person, place and time Key concept
Disease seen in hospital may not be representative of disease in the community
Person, place and time Basic descriptive epidemiology
Describing a disease in a population in terms of person (who), place (where), time (when)
Person, place and time Mapping/survey
Survey of disease in community must be a representative sample. Random means each individual (or household) has an equal chance of being included - it does NOT mean haphazard sampling
Person, place and time Summary
The purpose of epidemiology is to understand the distribution and determinants of disease in populations in order to improve disease control. Use of epidemiological techniques (description of health and disease in a population, natural history of disease, risk factors/causation of disease, evaluating interventions). Basic descriptive epidemiology (time, place, person. need to know denominator. Percentage population with disease usually more useful than absolute number). Interpreting data (many possible explanations for apparent differences (or lack of) in routinely-collected data). Disease in hospital vs disease in community (the ears of the hippopotamus, influenced by disease severity but also (access to hospital, quality of care in community)). Surveys for disease in a community (must be a representative sample, random not haphazard).
Quantifying disease frequency Prevalence & Incidence definitions
Prevalence: The number of cases of a disease in a defined population. Incidence: the number of new cases of disease in a defined population over a specified PERIOD of time (this is usually measured in cohort studies)
Quantifying disease frequency Relationship of prevalence and incidence
The number of cases of disease at a given point in time (prevalence, P) will depend upon: the number of new cases that arise (incidence, I) AND how long each case lasts (duration, D) Example: Measles (high incidence, short duration, population prevalence low) HIV (low incidence, lifelong duration, population prevalence can be very high) HIV prevalence among gold miners in South Africa = 29% (out of every 100 gold miners, 29 are HIV+ at the time measured). HIV incidence among gold miners = 2% per year (2 out of 100 previously HIV-negative gold miners acquire new HIV infection every year)
Quantifying disease frequency Incidence risk and incidence rate
Both count the number of new cases - the difference is in the denominator. Incidence risk counts number of new cases that arise in a population and divides them by the number of people who started off at risk (eg annual incidence of Salmonellosis in Liverpool supporters attributed to chicken pies is 15/1000). Incidence rate counts number of new cases that arise in a population and divides them by the person-time at risk. eg annual incidence rate of salmonellosis in Liverpool supporters attributed to chicken pies is 25/1000 (because not all Liverpool supporters identified at start of season attended every match, so denominator is smaller)
Quantifying disease frequency Importance of denominator when calculating incidence: concept of population at risk
Strictly speaking, incidence is a measure of risk (or rate). Fairly meaningless to describe incidence of a disease in a population if many people are not at risk (eg risk of testicular cancer in the general population vs incidence in males in general population). You can’t get a disease if you are not at risk (so ideally the denominator of an incidence estimate should only include the ‘population at risk’). Example: calculation of HIV incidence: in a district of 30,000 adults there are 200 new cases in one year. But if 1000 people already had HIV, these should not be included int he denominator for the calculation of HIV incidence. Incidence = NEW cases arising in a defined period among a population FREE OF DISEASE at the start of the period of observation
Quantifying disease frequency Incidence risk
Numerator (top number) = number of people in a population who acquire disease in a specified time period. Denominator (bottom number) = total number of people in the population who were free of disease at the START of the period of observation. Result usually expressed as a percentage or per 1000. Example HIV: Cohort 10,000 adults, all have HIV status measured on 1 January and again on 31 December. on 1/1, 1000 are HIV positive, by 31/12 200 have acquired new HIV. Population at risk is 10,000-1000=9,000, Cumulative incidence = 200/9000 = 2.2%. Incidence risk is easier to calculate than incidence rate (but problematic) - simply count how many people you start with and count how many have developed your outcome disease at the end. This works fine if all the people you start with can be found and checked to see if they have your outcome disease of interest. If they can’t be found - they are lost to follow up, then you can’t verify them as diseased or disease free, so your numerator lacks accuracy
Quantifying disease frequency Incidence rate
If the population changes during period of observation, we need to take account of this. For incidence rate, denominator is person-time at risk. Person-time at risk = total time that each healthy individual contributes during the period of observation. Logically, the number of new cases must depend on how many people you follow, and how long you follow them for. Example: Consider PrEP for sex workers - you plan to evaluate the effect of PrEP on the HIV incidence rate so you measure HIV status at the start, and quarterly thereafter. You count the number of new HIV infections over 1 year. Denominator takes into account not just the number of HIV negative women at the start, but how long each woman remains HIV negative, until she 1 becomes HIV positive 2 leaves the programme (moves away or dies) or 3 gets to the end of the period of observation.
Quantifying disease frequency Incidence risk versus rate
With larger numbers and more losses, the differences can become substantial. This sis particularly important if comparing between populations (eg where there were more losses from one than from the other). This calculation of incidence rate assumes that each woman became HIV positive on the day that she was tested positive - this is clearly not correct. To improve precision, need to ‘estimate’ when each woman actually became HIV positive - by convention, fi this is not known, it is estimated as halfway between the last negative test and the first positive test - ie, if testing is done every 3m, assume HIV was acquired 1.5m after last negative test
Quantifying disease frequency Summary
Prevalence (number of new cases of a disease in a defined population at a given point in time). Incidence (number of new cases of disease rising in a defined population during a specified period of time). Numerator for incidence is the number of NEW cases. Denominator can be calculated in different ways: Risk (number free from disease at start). Rate (person TIME at risk). Prevalence depends on both incidence and duration.