enzymes Flashcards

1
Q

role of enzymes

A
  • catalyse anabolic reactions (growth)
  • catalyse catabolic reactions (breaking down)
  • catalyses digestion
  • enzymes allow metabolic reactions
  • increase ROR up to Vmax
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2
Q

specificity

A
  • each enzyme catalyses one biochemical reaction
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3
Q

how do enzyme inc ROR

A
  • mol collide successfully

- reduce the activation energy required to react

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4
Q

lock and key hypothesis

A
  • substrate binds to its complementary active site
  • enzyme-substrate complex formed
  • substrates react
  • products formed in an enzyme-product complex
  • products released
  • enzyme unchanged and undergoes further reaction
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5
Q

induced fit hypothesis

A
  • enzyme changes shape as the substrate enters
  • initial interaction between the enzyme and substrate is weak
  • induces changes in tertiary structure of enzyme
  • strengthens binding
  • strains substrate mol
  • weakens bonds in the substrate
  • lowers Ea required
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6
Q

intracellular enzymes

A
  • structure + functions of cells + organisms.
  • enzyme catalase
  • breaks down H2O2 into O2 + H2O
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7
Q

extracellular enzymes

A
  • enzyme amylase
  • starch broken down into maltose
  • salivary glands
  • pancreatic juice in small intestine
  • enzyme maltase
  • maltose broken down into glucose
  • small intestine
  • enzyme Trypsin which is a protease
  • catalyses digestion of proteins into peptides
  • then into amino acids by other proteases
  • pancreas
  • released in pancreatic juice into small intestine
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8
Q

effect of temp on enzymes

A
  • inc temp, increses KE
  • particles move faster, collide more frequently
  • more freq successful collisions between substrate and enzyme
  • more ESC formed
  • temp too high, bonds strain and break
  • changes tertiary structure of the protein
  • denatured
  • active site changes shape so substrate isn’t complementary
  • enzyme isn’t a catalyst
  • optimum temp have the highest rate of activity
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9
Q

temperature coefficient

A
  • Q10
  • measure of how much ROR inc with a 10°c rise in temperature
  • doesn’t apply to denatured enzymes
  • Q10 = R2/R1
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10
Q

cold temp

- thermophiles

A
  • enzymes adapted to cold
  • more flexible structures
  • less stable
  • small temp changes will denature them
  • thermophiles live in very hot env
  • enzymes are more stable
  • increases number of H-bonds + disulphide bonds in tertiary structures
  • shape of AS + protein is more resistant to change
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11
Q

pH effect on enzymes

A
  • change in pH is a change in H+ conc
  • optimum pH is where the AS is the right shape at a certain H+ conc
  • when pH changes, shape of enzyme + AS changes
  • when pH returns to optimum, protein returns to normal shape (renaturation)
  • if pH has a significant change, structure is irreversibly altered + denatured
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12
Q

substrate/enzyme conc

A
  • inc substrate = higher collision rate with AS
  • more ESC
  • inc ROR
  • inc enzymes
  • inc available AS
  • more ESC
  • faster rate
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13
Q

what are inhibitors

A
  • prevent enzymes from carrying out their normal function of catalysis
  • competitive + non-competitive
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14
Q

competitive inhibition

A
  • mol with similar shape to substrate
  • fits into active site
  • blocks the substrate from entering AS
  • prevents enzyme catalysing the reaction
  • enzyme can’t carry out its function
  • inhibited
  • substrate + inhibitors compete to bind to the AS
  • slows ROR bc less ESC formed
  • only bind temporarily so effect is reversible
  • exception = aspirin
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15
Q

effect of competitive inhibition on ROR

A
  • reduces ROR
  • doesn’t change Vmax
  • if subs conc is inc
  • more subs than inhibitor
  • Vmax can still be reached
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16
Q

competitive inhibition examples

A
  • Statins competitively inhibit enzymes
  • which synthesise cholesterol
  • reduce blood cholesterol conc
  • aspirin irreversibly inhibits the AS of COX enzymes
  • prevents synthesis of thromboxane + prostaglandins
  • produce pain + fever
17
Q

non-competitive + effect on ROR

A
  • inhibitor binds to allosteric site
  • tertiary structure of enzyme changes
  • AS changes shape
  • not complementary
  • unable to bind
  • enzyme can’t carry out functions so is inhibited
  • inc conc of enzyme/substrate wont help
  • inc conc of inhibitor will dec ROR
  • more AS unavaliable.
18
Q

example of non-competitive

A
  • organophosphates used as insecticides + herbicides
  • irreversibly inhibits acetyl choline esterase
  • necessary for nerve transmission
  • muscle cramps, paralysis
  • proton pump inhibitors
  • treat long term indigestion
  • irreversibly block enzyme system that secretes H+ into the stomach
  • reduce production of excess acid
19
Q

end product inhibition

A
  • product of reaction = inhibitor to the enzyme that produced it
  • negative feedback control mechanism
  • excess products aren’t made
  • resources aren’t wasted
  • non competitive, reversible inhibition
20
Q

example of end product inhibition

A
  • respiration catalysed by phosphofructokinase
  • non-competitively inhibited by ATP
  • ATP conc high, more ATP binds to allosteric site of PFK
  • prevents addition of second P-group to glucose
  • glucose isn’t broken down
  • ATP not produced at same rate
  • As ATP is used up
  • less binds to PFK
  • enzyme can catalyse Rt
  • adds second P-group to glucose
  • respiration continues
  • more ATP produced
21
Q

cofactors

A
  • non-protein
  • only work if another non-protein is bound to them

inorganic cofactors come from the diet as minerals (iron, calcium )

  • Cl- is a cofactor for amylase
  • prosthetic groups are cofactors (permanent + bind tightly)
  • Zn2+ prosthetic group for carbonic anhydrase
22
Q

co enzyme

A
  • organic cofactors (bind loosely)

- derived from vitamins

23
Q

precursor activation

A
  • enzymes produced in inactive form (inactive precursor enzymes)
  • PE undergo change in shape to be activated
  • by addition of a cofactor
  • before addition of CF precursor protein = apoenzyme
  • ## when cofactor added = holoenzyme