Enzymes Flashcards

1
Q

All enzymes are proteins. True or false?

A

False, but almost all are

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2
Q

Which enzymes are not proteins?

A

Ribozymes - catalytic RNA molecules

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3
Q

The reactant in an enzyme catalyzed reaction is called…

A

…a substrate

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4
Q

What is the active site of an enzyme?

A

The small part of the molecule responsible for its catalytic action

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5
Q

Enzymes work by…

A

…changing the rate of a chemical reaction. They speed up metabolic reactions by reducing the activation energy needed for the uncatalyzed reaction.

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6
Q

Characteristics of enzymes

A
  • Chemically unaltered, equilibrium constant too
  • Operate under standard physiological conditions
  • High specificity
  • High catalytic efficiency
  • Form complexes
  • Reusable
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7
Q

Modes of enzyme action

A
  • Lock and key

- Induced fit

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8
Q

Lock and key enzyme action

A

Both enzyme and substrate have corresponding shapes that lets them fit

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9
Q

Induced fit model

A

Enzyme and substrate change shapes to produce fit

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10
Q

Factors affecting enzyme action

A

Temperature
pH
Concentration
Co-factors

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11
Q

Temperature and pH higher than the optimal value will lead to…

A

Denaturing of the enzyme

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12
Q

Optimal temperature for enzymes in the human body

A

37oc

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13
Q

Optimal pH for enzymes in the human body

A

~8

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14
Q

Effect of high temperature on enzyme

A

Shape change, midfolding and denaturing

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15
Q

What are co-factors?

A

Small organic, inorganic, metallo-organic molecules or metal ions required by some enzymes for activity

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16
Q

Examples of prosthetic co-factors

A

Heme in haemoglobin

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17
Q

What are prosthetic groups?

A

Co-factors that are tightly bound to enzymes and remain associated with then between reaction cycles.

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18
Q

What are co-substrates?

A

Weakly bound co-factors that can associate and dissociate between cycles, behaving like substrates.

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19
Q

Biotin (CE)

A

Carboxylation

20
Q

Cobalamin (CE)

A

Alkylation, intramolecular rearrangements and ribonucleotide reduction

21
Q

Acyl transfer

A

Co-enzyme A, Lipoic acid (CE)

22
Q

Flavin (CE)

23
Q

Nicotinamide co-enzymes

24
Q

Amino group transfer

A

Pyridoxal phosphate (CE)

25
One carbon transfer
Tetrahydrofolate (folic acid) (CE)
26
Aldehyde transfer
Thiamine pyrophosphate (CE)
27
Sugar transfer
Uridine diphosphate (CE)
28
Classes of enzymes
6 - OTHLIL ``` Oxidoreductases Transferases Hydrolases Lyases Isomerases Ligases ```
29
Levels of enzyme specificity
Absolute - Just 1 substrate Group - One group of substrate Steroisomeric - One stereoisomer
30
Oxidoreductases function and examples
Electron transfer or remove and addition of H atoms, eg alcohol dehydrogenase
31
Transferase function and examples
Functional group transfer, eg hexokinase
32
Hydrolase function and examples
Hydrolysis reactions, eg trypsin
33
Lyases function and examples
Cleavage of bonds to form double bond, eg pyruvate decarboxylase
34
Isomerases function and examples
Transfer of groups within molecules, isomerisation, eg Maleate isomerase
35
Ligases or synthases function and examples
Bond formation, ATP hydrolysis, eg pyruvate carboxylases
36
Parts of a protein enzyme structure
Active site | Allosteric site
37
Organic and inorganic co-enzymes are called...
Co-enzymes and Activators
38
Apoenzyme
No covalently bound prosthetic group
39
Holoenzyme
Apoenzyme + Prosthetic group
40
Proenzyme or Zymogens
Require enzymes to lyse portions of their peptide bonds for activation
41
Examples of proenzymes
Angiotensin, Chemotrypsin, Pepsinogen
42
Isoenzymes
Enzymes that exist in different forms but can be differentiated based on solubility, activation, electrophoretic mobility, etc
43
Characteristics of isoenzymes
- Catalyze same reaction but with different potencies - Tissue specificity - Multiple genetic origin
44
Isoforms
Different form of an enzyme resulting from posttranscriptional modifications but same genetic origin.
45
Where is a substrate oriented for catalysis?
The binding site of the active site
46
Effects of residues at binding sites
- H-bond formation - Hydrophobic interactions - Temporart covalent interactions (Van Dar Waals)
47
Active sites ate affected by environmental conditions. True or false?
True