Environmental factors and growth Flashcards

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1
Q

Where can they grow

A
  • inside gut
  • in soil
  • in fresh water lake
  • in root of legume
  • Food production
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2
Q

What do they need nutrient for

A
  • energy
  • biosynthesis
  • growth (reducing power, CO2, hydrogen and e- to organi molecules also support energy & biosynthesis)
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3
Q

95% of any cell consists of only a few macronutrients:

A

[ dry weight from high to low]

Carbon, oxygen, nitrogen, hydrogen, phosphorous, sulphur

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4
Q

macronutrients needed for component of

A

lipid, carbohydrate, protein, nucleic acids

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5
Q

Other macronutritents and function

A

Magnesium - Enzyme co factors, complex ATP, stabilises ribosomes and membranes

Iron - Electron transport, enzyme co-factors

Calcium - endospore heat resistance and many roles

Potassium - enzyme activity

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6
Q

Trace elements needed

A

Cobalt, zinc, Manganese, Nickel, copper, molybdenum

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7
Q

if anything limiting in macro or micronutrients, microbes would

A

growth would stop

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8
Q

varied fueling reactions

A

CO2 > carbon source
Organic compounds > energy , carbon source, electron
Light > energy source

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9
Q

Organic carbon can derive from ______ ; can be used by __________ as _________ (3)

A

eg glucose, fatty acids, amino acids

heterotrophy bacteria

Used as:
- backbone for all cellular components (along with H & O)
- energy source - for fermentation or respiration
- supplies electrons
= CHO + O2 > CO2 + H2O + e-
= Reduced carbon, more energy (e-)

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10
Q

often preferred C-source

A

Glucose

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11
Q

which can use over 100 different C- compounds

A

Burkholderia cepacia

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12
Q

Many common soil bacteria can utilise unusual compounds such as

A

pesticides, rubber, antibiotics

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13
Q

Others highly, restricted like -Leptospira use only_______ for C source

A

long chain fatty acids

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14
Q

What is inorganic carbon ?
can be used by ________
fixed by ________ or ___________

A
Inorganic carbon (CO2) > a source of carbon
autotrophy bacteria
  • Must be reduced (fixed) for incorporation into cell building blocks
  • Fixed in photosynthesis: CO2 + H2O > CH2O + O2
    or chemically: CO2 + H2S > CH2O + S

Fixation is an expensive process, NOT a source of energy, needs an alternate source of energy (eg light)

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15
Q

Glucose is a source of

A

Carbon, hydrogen, oxygen

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16
Q

Cysteine is a source of

A

Carbon, hydrogen, oxygen, sulphur, nitrogen

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17
Q

Carbon dioxide is a source of

A

Carbon, oxygen

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18
Q

The sources of nutrients- Nitrogen compose organic/ inorganic molecules ? examples

Required for

A

-Organic molecules

  • ammonia [can be incorparted into amino acid synthesis]
  • nitrate (NO3-), which can reduce to ammonia (NH4+) via nitrate reduction
  • Nitrogen gas via nitrogen fixation (N2 to NH3) eg Rhizobium in plants - nitrogenase

protein, nucleic acid, some lipids, carbohydrate

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19
Q

~50% of all nitrogen fixation is in ________ by _______

A

oceans, eg Cyanobacteria

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20
Q

Sources of nutrients: Phosphorus absorbed as __________

Sulphur absorbed as __________

A

Mostly absorbed as inorganic phosphate

Generally absorbed as sulphate (SO42+) and reduced (Assimilatory sulphate reduction)

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21
Q

Nutritional types of microbes

A

Define organisms by their carbon, energy and electron sources

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22
Q

Bacteria used reduced, preformed organic compounds as source of carbon

A

Heterotrophs

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23
Q

Autotroph

A

use CO2 main or only source of carbon

24
Q

Nutritional types of microbes (Energy source)

A

Phototrophs- Make energy using LIGHT

Chemotroph - Make energy from CHEMICALS

25
Q

Nutritional types of microbes (Electron source)

A

Lithotrophs (‘rock eaters’) - Reduced inorganic compounds. eg H2S, H2, NH4+, NO2 – ,Fe2+

Organotrophs -Organic molecules eg glucose

26
Q

Thiobacillus denitrificans uses____ as electron donor and _____ as electron acceptor, products __________

A

H2S as electron donor
NO3- as electron acceptor

produce SO42- and N2

27
Q

Photolithoautotrophs (identify and example)

A

Light, Inorganic H2/e-, CO2

e.g. Cyanobacterium: Light, CO2, H2O

28
Q

Chemolithoautotrophs (identify and example)

A

Inorganic chemical, Inorganic H2/e-, CO2

e.g. Thiobacillus: Elemental sulphur or Sulphide (H2S) and CO2

29
Q

Chemoorganoheterotrophs (identify and example)

A

Organic carbon, Organic H2/e- , C organic

Micrococcus, Staphylococcus and most pathogenic bacteria: Glucose + a huge variety of other C sources

30
Q

Many organisms need only the basics: _________ for growth as they have _________

Others cannot make everything from scratch, must obtain compounds from _____________

A

C, H, N, O P, S, energy and minerals

Have all pathways and enzymes needed

from environment/ media

31
Q

Bacteria growth factors

A

eg Amino acids, purines, pyrimidines, vitamins

[Common in host associated pathogens]

32
Q

Chemical and physical environment

A

nutrients / Temperature / salinity / pressure

33
Q

Prokaryotes can live almost anywhere - Most survive in “normal” conditions of _____________

A

water, pH and temperature

34
Q

Extremophiles

A

High temperature, salinity, pressure, pH, anoxia

35
Q

Plasma membrane separates microbe from environment

A

= Affected by external osmotic pressure - Hypotonic and hypertonic effects
= Use compatible solutes to control turgor
= Cell wall maintains shape
= Protists use exclusion bodies in cells

36
Q

Water activity

A

a measure of water availability and it can limit growth
aw = Relative Humidity/100

Water isn’t always available even when present

  • Some is bound to solutes (osmotic effect) : High solute concentrations reduce aw
  • Some is bound to solids (matrix effect)
37
Q

aw 0.55

A

DNA is disordered, lower limit of life

38
Q

aw 0.85- 0.80

A

Salami, preserves

Saccharomyces, Staphylococcus, Penicillium

39
Q

aw 0.98- 1.00

A

Blood, fresh veg, meat, seawater

Many microbes

40
Q

halophilic

A

(salt-loving)

Halobacterium - 2.8 M to 6.2 M (saturation)

41
Q

halotolerant

A

(salt-tolerant)

Staphylococcus aureus - up to 3M NaCl (aw= 0.85)

42
Q

Osmotolerant

A
(high osmotic pressure)
Saccharomyces rouxii (aw = 0.60)
43
Q

Adaptation to high salt

A

[NaCl conc. (M)]

Non halophile : 0- 1M (op. 0M)
Halotolerant : 0-3M (op. 0M)
Moderate halophile : 0.1-3.5M (op. 2M)
Extreme halophile : 2- 4M (op. 4M)

44
Q

Microbes grow from pH __ to ___

A

from pH 10

Neutrophiles pH 5.5 - 8 (most organisms)
Acidophiles pH 0 - 5.5
Alkalophiles pH 8.5 - 11.5
BUT all maintain an internal pH of 5.5 - 8

45
Q

Temperature ______ speed up reactions

Increasing temperature / Low temp effects

A

increase ; 10°C increase doubles reaction rates

Increasing temperature damages cells - Denatures enzymes and disrupts membranes

Low temp stops growth- Solidifies membranes and enzymes, freezing can kill cells

46
Q

Cardinal temperatures

A

(minimum, maximum and optimum temp for maximum growth)

E. coli (approx:10°C, 37°C, 45°C)
Low: Bacillus psychrophilus (-10°C, 24°C, 30°C )
High: Pyrolobus fumarii (90°C, 106°C, 113°C)
Limit ~ 140°C (ATP degrades)

47
Q

Psychrophilic

A

cold-loving (-2 to 20°C)

48
Q

Mesophilic

A

“normal” (15 to 45°C)

49
Q

Thermophilic

A

High temp (max 55-80°C)

50
Q

Hyperthermophilic

A

Very high temp (80-113°C)

51
Q

Define bacteria by environment temp

A

Psychrophilic
Mesophilic
Thermophilic
Hyperthermophilic

52
Q

What am I?

  1. Escherichia coli - lives in human gut
  2. Methanococcoides burtonii - from an Antarctic lake
  3. Pyrococcus abyssi - from a deep-sea hydrothermal vent
  4. Thermus aquaticus - Source of PCR enzyme taq, used at 72°C
A
  1. Mesophile
  2. Psychrophile
  3. Hyperthermophile
  4. Thermophile
53
Q

Effect of Oxygen Concentration

A

Obligate aerobes - Must have O2 (Pseudomonas aeruginosa)

Facultative anaerobes - Grow better if O2 present (E. coli)

Microaerophiles - Low O2 (2-10%, Campylobacter pylori)
(atmospheric O2 (~20%) [common among pathogens]

Obligate Anaerobes - No O2 at all (Clostridium botulinum)

Aerotolerant anaerobes - Ignore O2 (Lactobacillus casei)

54
Q

Other environmental factors

A

Pressure

Radiation

55
Q

Pressure for bacteria

A

Deep sea pressure can be >1000 Atm, 2*C
Barotolerant and barophilic (require high pressure) microbes
Hyperthomophiles also require high pressures.

56
Q

Radiation

A
  • Both visible and invisible. As wavelength decreases, energy increases
  • damages DNA induce mutations (UV of wavelength 260 is most lethal.

Micrococcus sp. and Haloarchaea have pigments to screen UV

Deinococcus radiodurans

  • survive ionising radiation at high levels
  • Grows in nuclear reactors
57
Q

adaptations of thermophiles

A

protein structure stabilized by more H bonds /more proline / chaperones

histone-like proteins stabilize DNA

membrane stabilized by more saturated, more branched and higher molecular weight lipids / ether linkages (archaeal membranes)