Emerging + Re-emerging Infectious Diseases Flashcards

1
Q

What is an emerging infectious disease?

A

= infections that have recently appeared within a population

= those whose incidence or geographic range is rapidly increasing or threatens to increase in the near future

= can be caused by previously undetected or unknown infectious agents

e.g. Ebolavirus, E.coli 0157:H7, Borrelia burgdorferi

(= all have different economic impacts and mortality risks associated)

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2
Q

What are re-emerging infectious diseases?

A

= diseases that once were major health problems + then declined dramatically

BUT = are again becoming health problems for a significant proportion of the population

e.g. Malaria / Tuberculosis

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3
Q

What are some factors contributing to emergence - the agent?

A

Evolution of pathogenic infectious agents
= microbial adaptation + change
= increasing virulence of microbes
(change in antigenic structure, new strains)

Development of resistance to drugs

Resistance of vectors to pesticides

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4
Q

How does Zoonoses affect emerging diseases?

A

= 2/3 emerging infections originate from animals
(wild and domestic)

= emerging influenza infections in humans associated with Geese, Chickens + pigs
(close proximity)

= animal displacement in search of food after deforestation / climate change (Lassa fever)

= humans themselves penetrate / modify unpopulated regions + come closer to animal reservoirs / vectors
(e.g. yellow fever, malaria)

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5
Q

What are factors contributing to emergence - the host?

A

Human demographic change
= inhabiting new areas

Mass migration of people
= natural and man-made disasters
= q/ concomitant rehabilitation of displaced people in temporary human settlements under unhygienic conditions

International travel
= trade / tourism
= global dispersion of disease agents, disease reservoirs + vectors (deliver)

Human susceptibility to infection
(e.g. immunosuppression)

Poverty + social inequality

Unsafe sexual practices (HIV, Gonorrhoea, Syphilis)

Changes in agricultural + food production patterns
= food-borne infectious agents (E.coli)

Increased international travel (influenza)

Outdoor activity

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6
Q

What are factors contributing to emergence - the environment?

A

Climate and changing ecosystem

Economic development + land use
= urbanisation, deforestation

Technology + industry
= food processing + handling

International travel + commerce

Breakdown of public health measure
= war, unrest, overcrowding-refugee camps, cities

Deterioration in surveillance systems
= lack of political will

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7
Q

What are some examples of climate and environmental changes?

A

Deforestation
= forces animals into closer human contact
= increases possibility for agents to breach species barrier

Climate changes
= e.g. spread of Malaria, Dengue, Leishmaniasis
= natural disasters + related outbreaks of infectious diseases
= changes in the habitat of disease vectors
= greater rainfall
= higher temperatures
= changes in direction of bird migration

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8
Q

What affect does poverty, neglect and weakening of health infrastructure have?

A

Poor populations
= major reservoir + source of continued transmission

Poverty = leads to malnutrition = leads to severe infectious disease cycle

Lack of funding
= poor prioritisation of health funds
= failure to develop adequate health delivery systems

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9
Q

What is the affect of uncontrolled urbanisation and population displacement?

A

Growth of densely populated cities
= informal settlements, substandard housing, unsafe water, poor sanitation, overcrowding, indoor air pollution
= uninhibited + reckless industrialisation leading to migration of labor population from rural to urban areas in unhygienic squatter settlements

Problem of refugees + displaced persons
= diarrhoea + intestinal parasitic diseases

Changes in ecology, increasing deer populations
= lyme disease (Borrelia burgdorferi)

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10
Q

What is the impact of Antimicrobial Drug Resistance? (causes and consequences)

A

Causes:
= incorrect prescribing patterns
= non-adherence by patients
= counterfit drugs
= use of anti-infective drugs in animals + plants
= loss of effectiveness
= community-acquired (e.g. TB)
= hospital acquired (e.g. MRSA)

Consequences:
= prolonged hospital admissions
= higher death rates from infection
= requires more expensive, more toxic drugs
= higher healthcare costs

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11
Q

Why is disease causation important?

A

Defining causation can be complex in an emerging disease

Cause
= initiation of a condition in an individual
= NOT previously affected

Critical Issues
= is exposure A casually related to outcome B?
= sometimes imprecisely used

Complications
= effect is small + competing causal factors are present

Framework developed
= in which causation can be assessed when considering environmental factors
= robust, simple tool that is not dogmatic

= e.g. Koch’s postulates, Bradford-Hill framework, Precautionary principle

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12
Q

What is Koch’s postulates?

A

Determining the causative agents of infectious disease:

= find evidence of particular microbe in every case of a disease

= isolate that microbe from an infected subject + cultivate it artificially in the laboratory

= inoculate a susceptible healthy subject with the laboratory isolate + observe the resultant disease

= re-isolate the agent from this subject

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13
Q

What is the Bradford-Hill framework?

A

Strength
= large effect makes causal relationship more likely
= BUT strong association is o more likely to be causal than weak
= strong relationships allow co-variable to be identified

Consistency
= is there evidence for the same findings form more than one study also in different settings

Temporality
= is absolute: exposure must precede outcome

Biological gradient
= dose response?
= exposure threshold below which no effect is seen?

Plausibility
= does the exposure effect make sense?

Coherence
= does it all hold together in light of similar effects caused by something else

Experiment
= animal / human experiments
= does removing exposure reduce the effect

Analogy
= are there analogous situations that support the relationship
= similar pathogen / chemical

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14
Q

What is the precautionary principle (PP)?

A

Exposure A is cause of outcome B
= reduce A , it will reduce B at an individual or population level

Exposure A is LIKELY to cause outcome B
= PP says waiting for clear information of exposure A to outcome B is unacceptable
(must reduce A now)

= complicated by how to achieve reduction
= can cause hysteria in the media
= separating genetic and environmental factors

= e.g. covid
= e.g. BSE

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15
Q

What is the disease burden?

A

Of every 10 deaths
= 6 non-communicable diseases
= 3 communicable diseases, reproductive or nutritional conditions
= 1 injury / trauma

1 in 5 of all deaths = children <5 y.o
(often access to safe clean water - need to break the cycle)

Leading causes of death
= cardiovascular diseases, cancer, infectious + parasitic diseases

Burden is different globally
(economic development)

Factors affecting health status
= social / political environment
(economics, warfare, immigration, socioeconomic class)

= healthcare
(access , development level)

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16
Q

What is the phylogenetic tree?

A

= linking the different pathotypes + relevant variables

= mechanisms used by pathogenic bacteria to exploit human hosts are very diverse

= ID50 (infectious dose) can vary by over 10 orders of magnitude

= low ID50 values associated with capacity of bacteria to kill or survive phagocytes

= high ID50 values associated with motile + fast-growing bacteria that use quorum sensing based regulation of virulence factors expression

Also affected by:
= secretion system type
= genome size
= minimum generation time
= motility
= quorum sensing
= killing in phagocytes

17
Q

Why and how to detect and quantify pathogens?

A

Why
= for research
= to identify
= to monitor and advise during an outbreak / subsequent events

How
= culture
= molecular techniques
(PCR, qPCR, whole sample sequencing)

18
Q

Advantages and Disadvantages of Culture?

A

Advantages:
= CFU / MPN counts
= phenotypic traits
= pathogenicity
= biomass
= cultures means viable

Disadvantages
= might need containment lab (CL3)
= not representative of diversity or proprotionality
= underestimation of actual numbers
= bacteria can enter physiological state of VNBC (viable but not culturable)

19
Q

What are some molecular techniques?

A

= End-point PCR, quantitative PCR, sequencing

= overcome some limitations of culture

= allow all / targeted population to be observed + enumerated

= can be whole cell based, or nucleic acid detection based (or combination)

= techniques can be combined for greater understanding + resolution

= still need to resolve live / dead issue

20
Q

Advantages and disadvantages of End-point PCR ? (compared to real-time PCR + sequencing)

A

Advantages
= cheaper
= increased dynamic range of detection

Disadvantages
= inhibition
= relatively low sensitivity
= relatively short dynamic range
= low resolution
= non-automated
= size-based discrimination only
= non quantitative (MCN-PCR possible)
= post-PCR sequencing required for confirmation

21
Q

Advantages and disadvantages of real-time PCR ? (compared to End-point PCR + sequencing)

A

Advantages
= increased dynamic range of detection
= quantitative

Disadvantages
= design of template DNA + assay
= inhibition
= requires considerable optimisation
= expensive

22
Q

Advantages and disadvantages of sequencing ? (compared to real-time PCR + End-point PCR)

A

Advantages
= technology advancing
= speed
= price per read, getting cheaper
= coverage
= sensitivity
= resolution
= reproducibility
= less biased

Disadvantages
= high initial capital costs
= read length (improving though)
= constantly changing + a technological mystery to many (ownership not really possible - rent)
= noisy data in databases
= specialist bioinformatics knowledge
= certain amount of bias in PCR based sequencing