Domiant mutations and rogue proteins Flashcards

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1
Q

Why are dominant mutations so important ? What are rogue proteins?

A

Dominant mutations- easy to deal with genetically ( however, can be complex on molecular level)
-Dominant mutations have led to the discovery of inherited disease
-Rogue Proteins: proteins that are doing something that they should NOT be doing (in the wrong place, doing the wrong Job)

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2
Q

Discuss the discovery of inherited diseases, including the scientist who observed this.

A

Discovery of inherited diseases:
-Pierre- Louis Moreau De Maupertis (1698-1759) looked at family records and identified that Polydactyly was clearly INHERITED in the Ruhe family, because it passed from one affected individual to another
- He observed that it could be inherited from either parent
-genetically inherited human disorder

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3
Q

What is Polydactyly?

A

Polydactyly: An condition in which one is born with extra fingers or toes on a hand or foot
-genetically inherited condition
ex: 6 fingers, or 6 toes

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4
Q

Who was George Huntington and what did he discover? What is a chorea and what were its key features ?

A

During the 180os, George Huntington identifies a unique chorea
Chorea: set of individuals with movement disorder that became worse and eventually led to death
Key features of Huntingtons’s chorea (Huntington disease)
-“all the symptoms of common chorea (movement disorder ) were only in aggravated degree” (serious medical condition; symptoms start mild and progressively get worse )
-“there was a tendency to insanity, and sometimes that form of insanity which leafs to suicide, is marked” (referring to individuals with chorea, who committed suicide)
-“its third peculiarity is its coming on, at least as a grave disease, only adult life” (Huntington described how the disorder had a Late onset, later in adult life, or as an elderly)

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5
Q

why are fatal diseases found in young children?

A

Fatal diseases found in young children due to those diseases with Late onset. As you would have already have your own family, and been older before realizing you have Huntington’s disease. Hence, the disease could have already been passed on to child.

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6
Q

how does Huntington’ s disease affect the brain
Explain Huntington’s viewpoint when discussing about chorea being inherited

A

Huntington’s disease alters brain structure and function
-Huntingtion’s Chorea is inherited:
“when either or both the parents have shown manifestations of the disease, one or more of the offspring almost invariably suffer from the disease, if they live to adult age
-“But by any chance these children go through life without it, the thread is broken” (if children does not have disease, they will not pass it on to their kids)
-“it never skips a generation”

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7
Q

What kind of mutation is Huntington’s disease caused by? what allele causes the disease?

A

Huntington’s Disease is caused by a DOMINANT MUTATION
dominant allele causes disease (recessive allele is cauisng disease
if one parent is heterozygous for disease, 50% chancre for each child of getting the disease
ex: village in Venezuela has 7 generations of Huntingon’s disease: caused by TOXIC Protein
-Huntington was one of earliest human diseases that were mapped and cloned (it is incurable and fatal)

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8
Q

Discuss the different symbols in pedigree

A

Pedigree symbols: (intend to rep
square: male
circle: female
children are shown in birth order
Mating: square attached to circle
twins are special:
dizygotic (fraternal twins) : share a single point
has extra line for identical twins (monozygotic)
affected individuals are shaded
dead individuals: line through square or circle

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9
Q

how does Age affect Hungtington’s disease ?

A

Depending on age, will determine if your children still could have Huntington’s disease or not
For instance, if the mother or father is old (in 50s) with no record of the Disease, the children will most likely not have Huntington’s Disease (since disease is at late onset)
-However if look a genetic pedigree of young mother or father (IN 20s, or 30s,) there is still a chance that the children can have the disease if either parent ends up having it (late onset diseased ) in their 50s- onward

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10
Q

what happens to be people who are homozygous for Huntington trait?

A

They will have the onset of the disease at an EARLY AGE (if homozygous)
disease- incurable and fatal (whether HH or Hh)

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11
Q

What is the mechanism that causes Huntington’s Disease.

A

Huntington’s Disease is a CAG EXPANSION Disease
Huntington’s gene encodes a large protein
-At the start of the HD messenger RNA, their are several CAG repeats that encode for GLUTAMINE (string of glutamine)
- patients with Huntington’s Disease tend to have more CAG repeats than those who are normal (however not frame shift mutations, or amino acid changes)

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12
Q

Compare and contrast the number of CAG repeats in normal individuals vs those with Huntington’s Disease

A

Patients with Huntington’s Disease tend to have more repeats
-Normal Individual- 7-30 CAG repeats
-Huntington’s Disease: More than 30 CAG repeats (encoded more glutamines at start of protein)

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13
Q

Discuss what occurs in the brains of those with Huntington’s disease

A

People with Huntington’s Disease have a HIGHER number of CAG repeats and the CAG repeats will get BIGGER in the cells of the brain as they get older

Side Note: If DNA polymerase is faced with string gf Identical Nucleotides; it can make a mistake by deleting to adding more nucleotides to strand.

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14
Q

What molecular variation is associated with earlier death in those with Huntington’s Disease?

A

LONGER REPEATS (more CAGS) are associated with Earlier death in those who have Huntington’s Disease

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15
Q

How large Is the Huntington HTT protein ?
How is the protein affected in those with Huntington’s Disease?

A

The HTT protein is pretty long with more than 3,000 amino acids
-The Glutamine repeats (CAG) affect one end of the large HTT protein
(but rest of protein functions well)

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16
Q

How are changes in the protein observed? Explain how this process occurs

A

You can measure the changes in a protein by measuring DNA sizes with agarose gel electrophoresis.
process of Measuring DNA sizes (with gel electrophoresis) :
-DNA is a double helix with deoxyribophosphate backbone. The phosphates has Negative charge. if you put DNA on well, the DNA (with negative charge) gets electrically pulled toward positive electrode and will separate by size
** the SMALLER DNA fragments move FASTER (towards bottom) **

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17
Q

what is the purpose of measuring DNA size with gel electrophoresis? Provide an example

A

We can use information about DNA size to help us make diagnoses about Huntington’s Disorder
ex: have DNA samples from individuals in a family,
use PCR reaction to AMPLIFY the start of Huntington’s disease and observe
Pedigree example
-parents; Dad was 75 and had 1 fragment; wife had Huntington’s disease, 76 years old and had 2 fragments; Son has Huntington who has 2 fragments like mom and they both have bigger fragment than dad
is one of the sister’s Likely to contract Huntington’s Disease (pedigree shows 3 circles ) ?
Answer; Daughter 47 is likely to have Huntington’s Disease since she has one allele of the gene that is too large (bigger than mom and son with HD) likely due to CAG repeats

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18
Q

What other genes have dominant disorders caused by CAG repeats expansions? Explain the problem with these dominant diseases like Huntington’s Disease that have CAG repeats
Why are these Dominant diseases?

A

dominant disorders that are also caused by CAG repeat expansions in proteins:
mutation in Ataxin gene (nervous system function), HD, Androgen receptor, Atrophin, and SBMA
when the number of CAG repeats gets too High individual gets dominant disease
Problem in Huntington’s disease :
too many glutamines in proteins, it affects ability to break down or dispose of protein- causes build up of clumps of genes that clog the cell
each dominant disease slowly affects the cells where genes are normally active. The protein is not properly disposed of and the garbage that builds up causes symptoms in the body.
why dominant disease? ;
people with one copy or two copies of gene, still make defective protein that will accumulate and cause problems
-Still no cure for disease

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19
Q

What is Polydactylyl? what causes it?

A

Polydactyly: An condition in which one is born with extra fingers or toes on a hand or foot
-genetically inherited condition
ex: 6 fingers, or 6 toes
***Polydactyly is caused by changes in protein isoforms

20
Q

what is Postaxial Polydactyly? What kind of trait is it?

A

Postaxial polydactyly:
-The extra digit is next to LITTLE finger (PINKY) or little Toe
-This is the MOST COMMON form of polydactyly
Postaxial polydactyly is a DOMINANT trait, as it is passed on from parent to child.

21
Q

What is Preaxial Polydactyly?What kind of trait is it?

A

Preaxial Polydactyly:
-the extra digit is located next to the THUMB or Big Toe
-This also inherited as a dominant trait
(usually the affected individuals will be Heterozygous, and 50% of their children will be affected)

22
Q

what happens with crossed polydactyly

A

Crossed Polydactyly:
-the hands are preaxial (2 thumbs) and the feet are postaxial (two little toes)
or the hands are postaxial (2 pinky fingers) and the feet are preaxial (two big toes)
or more COMPLEX mix

23
Q

Explain what causes crossed polydactyly? compare and contrast the normal gene and gene that causes polydactyly

A

Crossed Polydactyly is caused by a TRUNCATED Gli3 transcription factor (important gene)
-Normal Gli3 protein- has 5 zinc fingers, and has longer chain than mutated one.
-Mutated Gli3 protein that causes crossed polydactyly is shorter since the end of protein is deleted (still has ZFD that binds DNA)

normally, a number of transcription factors bind to the DNA and control whether gene is turned on or off
humans have 3 Gli transcription factors, and these transcription control a lot of things

24
Q

Why is the ZFD (zinc finger Domain) in a protein so important?

A

ZFD (Zinc Finger Domain) - is the most common part of protein; it is used since Zinc or ions are needed to bind DNA to hold protein in a loop

25
Q

What controls the transcription factor Gli3?

A

Gli3 is a transcription factor controlled by hedgehog signals
Hedgehog pathway controls whether Gli3 is functional or not
Gli3 can be held INACTIVE at the cilia and cell membrane (not do anything) or…
Gli3 can be released and chopped into a short form which is Gli3 repressor that turns OFF a gene OR..,
Gli3 can be released and NOT chopped up and bind the same genes as Gli3 activator to turn ON a gene

26
Q

what happens with a Gli3 repressor? Why is Polydactyly caused by dominant mutation?

A

Gli3 repressor, there will be a short gene, since end of protein will be gone, and you will not be able to turn on gene(hence lose some function of protein, but can stilll turn off gene
Dominant mutations in Gli3 cause many related disorders to polydactyly

27
Q

what happens when there is a loss of Gli3 activity in mice?

A

The Loss of Gli3 activity causes a Unique form of polydactyly in mice : Eight SYMMETRICAL Digits

28
Q

Describe how Polydactyly mutations might affect competing Gli3 isoforms

A

Polydactyly mutations might affect competing Gli3 isoforms:
-The full length Gli3 proteins turns ON transcription of target genes
-The CLEAVED form of Gli3 turns OFF transcription
-These two Isoforms compete to regulate important developmental genes
-Most mutations that cause Polydactyly appear to damage or eliminate Gli3 activator, changing the regulatory balance.

29
Q

What is Achondroplasia? What causes it?

A

Anchodroplasia
-common cause of dwarfism
-caused by autosomal dominant mutation
-About 80% of the cases are sporadic, meaning they are caused by NEW mutations (not inherited)
Most people have a healthy life (ex: Jason Acuna)
Anchondroplasia- caused by overactive gene

30
Q

What are the characteristics of achondroplasia?

A

Characteristics of Achondroplasia:
-Small stature
-shortened upper limbs
-Short fingers and toes
-Large head, often with prominent bones visible in the forehead
-Leg deformities, like bow legs or knock knees

31
Q

What causes Achondroplasia?

A

Achondroplasia is caused by an Abnormally active FGF3 receptor
-FGF- Fibroblast growth factor receptor sits in cell membrane and listens for signals from other cells
- Achondroplasia mutation will be in two specific places in protein to cause Dwarfism: (ACH G346E, ACH G375C, G380R)
It will cause receptor to turn on too loud or too long

32
Q

What does FGF3 regulate?

A

FGF3 regulates important signals that control development
normally, 2 FGF receptors bind together and they regulate other proteins in the cell, by controlling phosphorylation even(ex; RAS pathway) to control decisions made during skeletal development (bones)
The receptor also controls protein transcription factors that turn on/off gene

33
Q

What happens when we isolate DNA from Achondroplasia gene, amplify with PCR and run it on a gene ?

A

If we isolate DNA from Anchodroplasia gene, amplify PCR and run it on a gene, We will NOT be able to determine if fetus develops anchondroplasia by looking at pedigree and DNA sample/Gel elctrophoresis
This is due to a MISSENSE mutation that causes anchondroplasia, and this mutation will not change the length of DNA. Hence looking at Gel electrophoresis not helpful
*** All the DNA fragments are the same size, the key mutation is missense allele.

34
Q

How can we tell if fetus will develop Achondroplasia?

A

You can use a restriction enzyme to cut the DNA into pieces and observe if it can cut one form and not the other, you see a difference

35
Q

what is role of Restriction enzymes? Provide an example of one

A

Restriction enzymes Cuts DNA at SPECIFIC Sequences
Ex; restriction enzyme EcoR1 will bind DNA sequence GAATTC and cuts it in the middle of it.

If you find a restriction enzyme (like BsrG1) that will cut the Achondroplasia mutation (not the normal DNA) then cut all DnA and runn on gel
Dad- unaffected, uncut band (1 total band)
Mom- Heterozygous for Achondroplasia; one part of DNA not cut, other part cut because of mutant gene (so 1 normal band, and 2 cut pieces of mutant gene = total of 3 bands on gel)
Hence fetus: has ability to develop Achondroplasia,(fetus has A all) since their DNA has characteristic ability to be cut (like affected mother) and 3 bands show upon gel electrophoresis model

36
Q

What leads to Achondroplasia in many individuals?
How do some dominant disorders arise?

A

Due to SPORADIC (New) Mutations
Some dominant disorders arise spontaneously

37
Q

What are spontaneous cases of a disorder caused by? Explain how they van be detected, and why this is important

A

Spontaneous cases are caused by NEW Mutations
New Mutations can be easily detected:
-A child has the disorder
-Neither parent is affected
The affected child can pass the disorder on to the next generation
-These cases allow us to estimate mutation rates .

38
Q

Describe the mutations rates seen in those with achondroplasia

A

Mutation rates:
-About 87.5% cases of Achondroplasia arise SPONTANEOUSLY
-This means about 1/36000 children born to unaffected parents will have achondroplasia
-Since each child has two chromosomes, that means about 1/72000 normal alleles of the gene mutate to A.
this is a mutation rate u = 1.4 x 10^-5
(1/72000)

39
Q

Explain when two spontaneous cases can arise in one family. How does this occur?

A

On RARE occasions, two spontaneous cases arise in one family
-the new mutation must have occurred in the developing germ line
if mutation occurred early in the process passed on two daughter cells, then 4 grand daughter cells, then 8 great-granddaughter cells and so on (those affected will have same mutation)
the male could be a mosaic: some sperm of one genotype and some of another (contain mutation)

-

if mutation occurred at end of process of sperm production, it will pass one mutation and go on to one child

40
Q

What is Neurofibromatosis? What causes it?

A

Neurofibramatosis: a condition that causes tumors to form in the brain, spinal cord and nerves
caused by HAPLOINSUFFICENCY (not rogue proteins)
-Haploinsuffiency- one copy of a gene is not enough for gene to function normally

41
Q

List three types of tumors associated with Neurofibramatosis. What causes Neurofibromatosis?

A

Neurofibramatosis
-The disease is associated with a high level of nervous system tumors
-There are three related disorders:
-Neurofibramatosis 1: tumors of peripheral nerves (skin)
-Neurofibramatosis 2: Schwann cell tumors
-Schwannomatosis: Schwann cell tumors
-Neurofibromatosis type 1 is caused by mutations in NF gene. It affects about 1/3000 people

42
Q

Discuss the variable symptoms that individuals with Neurofibramatosis may have

A

Variable symptoms:
-Mild cases only cause cafe-au-lait spots (dark patches of tissue)
-There are usually more than 6 of these spots
-Other causes also can result in cafe-au-lait spots

43
Q

What medical condition can NF1 (Neurofibromatosis 1) cause?

A

NF1 can cause OPTICAL GLIOMAS
-In neurofibromatosis 1, some tumors can develop in the eye
-These Gliomas can lead to vision loss

44
Q

What are Neurofibromas and what can cause them? what percent of patients have malignant tumors?

A

More SEVERE cases of NF1 can result in multiple neurofibromas
-Neurofibromas- small tumors often seen on the skin
- About 10% of patients develop malignant tumors(that can spread and kill people)
-in some patients, the number of tumors is very large (can be disfiguring, covering entire skin) and harmful to one’s health

45
Q

How do NF1 mutations affect the protein?
What leads to more severe effects and how does it occur?

A

Most NF1 mutations severely disrupt the protein
There are different cases such as missense mutations, missense at splicing sites (affect mRNA) , deletion or duplication that leads to frameshift and truncations
- DELETIONS of the NF1 gene cause more SEVERE effects (as the gene has lost its function)
ex; type 1 deletion (delete 1.4 millón base pairs)
human genome (about 3 billion base pairs)

46
Q

Why are NF1 mutations dominant?

A

NF1 mutations are more dominant because it is Haploinsufficient
-most dominant mutations make a protein that is defective in function, or present in inappropriately high amounts
-Haploinsufficient dominant mutations occur when a single good copy of the gene is NOT enough for normal function

Side note:
reasons why one good copy of gene is not enough
some genes need large protein full amount for it to function
-if only have one good copy of a gene, and mutation arises, that gene will be screwed and cell will form tumors (hence, two copies gives us a defense against mutations happening in our bodies)

47
Q

What were the two first dominant disorder identified as human genetic disorders

A

Huntington Disease and Polydactyly