DNA Repair Flashcards

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1
Q

what is a point mutation?

A

change from one base to another

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2
Q

what is a missense mutation?

A

base change produces a different amino acid

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3
Q

what is a nonsense mutation?

A

base change produces a stop codon

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4
Q

what is a transition mutation?

A

pyrimidine to pyrimidine or purine to purine

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5
Q

what is a transversion?

A

purine and pyrimidine interchanged

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6
Q

where do somatic mutations occur?

A

in any cell except germ cells and not inheritable

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7
Q

where do germ line mutations occur?

A

in gametes

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8
Q

what are autosomal mutations?

A

occur within genes located on autosomes e.g. not x or y

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9
Q

how does a loss of function occur from a mutation?

A

target gene may be inhibited or not binding where it is supposed to be so less protein production

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10
Q

how does a gain of function occur from a mutation?

A

gene expression when not usually expressed, interact with other proteins so more produced

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11
Q

how might imperfect replication cause mutations?

A

DNA polymerase makes an error, process not accurate enough

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12
Q

what are the types of replication damage?

A

replication slippage and tautomeric shifts

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13
Q

what is replication slippage?

A

loop formed in the template strand so polymerase misses it out and insertions and deletions occurs

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14
Q

where is slippage most common?

A

in common repeat sequences called hot spots

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15
Q

how can hot spots cause genetic diseases?

A

contribute to hereditary diseases such as huntingtons

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16
Q

what is a tautomeric shift?

A

allows non-complementary base pairing and changes the bonding structure

17
Q

what is a tautomer?

A

an alternate chemical form of purines and pyrimidines

18
Q

what may be caused by a tautomeric shift?

A

a permanent base pair change and mutations

19
Q

what happens if the damage is not replication related?

A

becomes a priority of the cell and translation and duplication of DNA prevented

20
Q

what are the types of DNA base damage?

A

depurination and deamination caused by spontaneous mutations

21
Q

what does DNA base damage lead to?

A

new base pairing and mutations

22
Q

what is depurination?

A

loss of a purine forming an apurinic site

23
Q

what is deamination?

A

removal of an amino group

24
Q

what does deamination cause?

A

change in base pairing

25
Q

what is oxidative damage?

A

damage caused by exposure to high energy radiation and cellular products

26
Q

what by products may cause the damage to DNA?

A

superoxidases, hydroxyl radicals and hydrogen peroxide

27
Q

what are transposable elements?

A

DNA elements that move within or between genomes

28
Q

what methods do transposable elements use to move?

A

cut and paste and copy and paste

29
Q

what types of damage do repair systems interact?

A

spontaneous and inuduced damage

30
Q

what are the pros of DNA repair?

A

maintains integrity of the genome and counteracts cancer causing damage

31
Q

what are the types of replication associated repair?

A

proofreading and mismatch repair

32
Q

what is proofreading?

A

polymerase uses 3’ to 5’ exonuclease to remove the incorrect base

33
Q

what is mismatch repair?

A

mis-paired nucleotide and its neighbours are removed and replaced by correct nueleotide, sealed by ligase

34
Q

what are the other types of DNA repair?

A

direct reversal, excision repair and double stranded break repair

35
Q

what is direct reversal?

A

damage directly undone by cellular enzymes via photoreactivation to seperate two pyrimidines

36
Q

what is base excision repair?

A

DNA glycosylase detects the altered base and removes it

37
Q

what is nucleotide excision repair?

A

repairs bulky lesions that alter or distort the double helix by cutting out thymine dimer

38
Q

how does both base and nucleotide repair work?

A

light dependant repair mechanism where exonuclease cuts out the error, polymerase seals the gap and ligase joins the nick