DNA Flashcards

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1
Q

nucleic acids

A
  • biological molecules (biopolymers)
  • their monomers are nucleotides
  • 3 main types are DNA, RNA and ATP (a modified nucleotide)
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2
Q

nucleotide structure

A
  • contains a phosphate group, a pentose sugar and a nitrogen base
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3
Q

5 types of nitrogen bases

A
  • adenine, thymine/uracil, cytosine and guanine
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4
Q

pyrimidines

A
  • 1-ringed nitrogen bases (C, T, and U)
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5
Q

purines

A
  • 2-ringed nitrogen bases (A and G)
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6
Q

what is DNA acronym for

A
  • deoxyribonucleic acid
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7
Q

DNA measurements

A
  • one turn = 3.4 nm
  • between rungs = 0.34 nm
  • across= 2.0 nm
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8
Q

hydrogen bonds in DNA

A
  • there are 2 between A and T

- there are 3 between C and G

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9
Q

are the 2 strands of polynucleotides in DNA antiparallel to each other?

A
  • yes. this means that they are parallel to each other but face opposite directions
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10
Q

in DNA:
adenine can only pair with ___
cytosine can only pair with___

A
  • thymine

- guanine

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11
Q

Chargaff’s rule

A
  • no. of A = no. of T. A = T.
  • no. of C = no. of G. C = G.
  • named after the chemist, Erwin Chargaff.
  • total amount of purines = total amount of pyrimidines.
  • ratio of purines to pyrimidines in DNA of every cell = 1:1
  • A + G = T + C
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12
Q

cell theory

A
  • all living organisms are made up of cells which reproduce to make new cells like themselves and cells come only from pre-existing cells
  • cell has life cycle of its own; is made from a pre-existing cell (“born”), grows, becomes specialized, performs their functions and die
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13
Q

chromosomes consist of

A
  • DNA and proteins
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14
Q

what is an important cell function related to the cell theory?

A
  • to make daughter cells (which have same no. and types of chromosomes) which are exactly like parent cells
  • when cell is ready to divide, it grows larger; the number of organelles doubles and the amount of DNA doubles as well, which is due to DNA replication
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15
Q

the doubling of the amount of DNA results from ___

A
  • DNA replication
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16
Q

DNA replication

A
  • making copy of DNA. DNA is only biomolecule capable of making its own copy!
  • occurs in nucleus
  • occurs on both strands of DNA (all the genes replicate)
  • result is 2 identical copies of o.g. DNA
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17
Q

steps of DNA replication

A
  • double stranded DNA unwinds and unzips
  • the complementary bases pair on each unzipped strand
  • adjacent nucleotides join
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18
Q

talk about step 1: “double stranded DNA unwinds and unzips”

A
  • after unwinding, hydrogen bonds still exist. after unzipping, hydrogen bonds break
  • DNA helicase does the unzipping
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19
Q

talk about step 2: “the complementary bases pair on each unzipped strand”

A
  • in the nucleoplasm, there is an abundance of free nucleotides. these can bond with the complementary exposed nucleotides on the replicating DNA molecule
  • “new” and “old” nitrogen bases join by hydrogen bonds, but new nucleotides are not joined to each other yet
  • enzyme at this stage is DNA polymerase
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20
Q

talk about step 3: “adjacent nucleotides join”

A
  • the complementary base pairings result in the pairing of each base, but sugar and phosphate are not connected to make backbone
  • so, adjacent sugar and phosphates are sealed by the enzyme DNA polymerase to make a continuous strand
  • DNA ligase is also active at this stage. it spots any errors in replication, proofreads and corrects mistakes and errors
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21
Q

result of DNA replication

A
  • 2 identical molecules of DNA

- each of the daughter cells get exactly the same DNA

22
Q

semi-conservative

A
  • DNA replication is referred to as this
  • this is because 1 strand of DNA is “new” and the other is “old”
  • semi = half, conservative = the same
23
Q

RNA

A
  • ribonucleic acid

- RNA nucleotide consists of a pentose sugar (ribose), a phosphate group, and 1 of A, C, G or U. Uracil replaces thymine

24
Q

difference between uracil and thymine structure

A
  • thymine has 1 extra line coming from it
25
Q

type of sugar present in DNA

A
  • C5H10O4 (1 less oxygen than RNA. prefix “deoxy” is for “to remove oxygen”
  • aka deoxyribose sugar
26
Q

type of sugar present in RNA

A
  • C5H10O5

- aka ribose sugar

27
Q

nitrogen bases present in DNA

A
  • A, T, C or G
28
Q

nitrogen bases present in RNA

A
  • A, U, C or G
29
Q

structure of DNA

A
  • double helix
  • 2 strands
  • hydrogen bonds present
30
Q

structure of RNA

A
  • single helix
  • 1 strand
  • no hydrogen bonding, but in tRNA, there is temporary hydrogen bonding that results from the looping over of the strand
31
Q

abundance of DNA found in

A
  • mainly nucleus, some found in mitochondrion and chloroplast
32
Q

abundance of RNA found in

A
  • both cytoplasm and nucleus, as it’s made in the nucleus and functions in the cytoplasm
33
Q

types of DNA

A
  • only 1 type
34
Q

types of RNA

A
  • 3 types: mRNA, tRNA and rRNA
35
Q

DNA controls the production of ___ in cells

DNA stays in the ___ and carries the ___ for the construction of proteins

A
  • proteins

- nucleus, codes

36
Q

gene

A
  • section of DNA that contains the code to produce 1 polypeptide
  • ” a genomic sequence, either on DNA or RNA, directly encoding functional products, either RNA or protein” - Mark Gerstein and associates, 2007
37
Q

the construction of a polypeptide will take place in the ___

A
  • cytoplasm
38
Q

2 stages of protein synthesis

A
  • transcription and translation
39
Q

transcription

A
  • occurs in nucleus where mRNA molecule is made on a template of a gene. mRNA molecule transcribes the codes for the production of protein
  • RNA polymerase joins the RNA nucleotides
  • after transcription, mRNA contains codons which are complementary to DNA triplet code
40
Q

processing of primary mRNA (part of transcription):

A
  • mRNA formed is primary mRNA (not finished product). it possesses some nucleotides which are unnecessary known as “hereditary junk” without known functions. called introns
  • useful nucleotides are exons
  • during processing of primary mRNA, exons are retained and introns are cut out. processed mRNA is called mature mRNA molecule, which passes from nucleus into cytoplasm where it gets associated w/ribosomes
41
Q

translation

A
  • amino acid sequence is determined by mRNA sequence made from DNA
  • 3 steps are initiation, elongation and termination
42
Q

initiation

A
  • rRNA, 2 ribosomal subunits and tRNA are brought into place. start codon (AUG) is in action. tRNA pairs w/this codon, then large ribosomal subunit joins to smaller one.
43
Q

elongation

A
  • amino acids are put together in correct order, peptide bond forms. ribosome accommodates 2 tRNA molecules: incoming and outgoing tRNA molecule. incoming tRNA amino acid complex receives peptide from outgoing tRNA. ribosomes move laterally so that next mRNA codon is available to receive incoming tRNA amino acid complex. anticodons match with codons. peptide grows and primary polypeptide structure forms
44
Q

termination

A
  • rRNA, ribosomal subunits, and tRNA are separated. “STOP” codon initiates termination. ribosome dissociates into 2 subunits and falls off mRNA molecule
45
Q

production of polypeptides occur while ___ is translated

A
  • mRNA
46
Q

can more than 1 ribosome be used in translation?

can several copies of polypeptides be produced quickly?

A
  • yuh and yuhhh
47
Q

mutation summary

A
  • change in the base pairs of DNA by deletion or insertion of base pairs
  • 1 gene mutation = small scale, affects that gene only
  • chromosomal mutation = larger scale, affects many genes on chromosome
48
Q

effects of mutation

A
  • can cause changes in mRNA made during transcription and change amino acid sequence of polypeptides produced in translation. ex/sickle cell anemia = change in 1 base pair of genes causing 1 amino acid substitution in hemoglobin quaternary polypeptide. it’s abnormal and causes sickle shape RBCs during periods of low oxygen concentration
  • environmental mutagens cause mutations in humans
49
Q

examples of environmental mutagens

A
  • chemicals like benzopyrene in tobacco smoke (including second hand smoke)
  • radiation (UV light and X-rays)
50
Q

recombinant DNA

A
  • rDNA
  • combining DNA from 2 or more different organisms
  • uses: clone genes, produce human proteins (insulin hormone), produce antigenic proteins (surface features) to produce safe vaccines, produce frost resistant crops, produce animal hormones (bovine growth hormone), enhance naturally occurring bacteria for use in environmental cleanup
51
Q

DNA contains the code for

A
  • the sequence of amino acids in a protein