Cycle 1 Flashcards

1
Q

Q: What is Chlamydomonas reinhardtii?

A

A: It is a eukaryotic green algae with flagella (2), a cell wall with a plasma membrane, and an eyespot (red dot).

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2
Q

Q: Why are haploid Chlamydomonas cells grown in the lab?

A

A: Haploid cells allow mutant phenotypes to be expressed without being masked by wild-type genes.

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3
Q

Q: How does the size of bacteria compare to a eukaryotic cell?

A

A: Bacteria (1 µm) are much smaller than a eukaryotic cell (10-100 µm).

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4
Q

Q: What are the key features of eukaryotic cells?

A

A: Complex cells with a membrane-bound nucleus, linear DNA associated with histones, membrane-bound organelles, larger ribosomes, and division by mitosis and meiosis.

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4
Q

Q: What are the key features of prokaryotic cells?

A

A: Simple, single-celled organisms without a true nucleus, circular DNA, no membrane-bound organelles, smaller ribosomes, and they divide by binary fission.

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4
Q

Q: What are the phases of Chlamydomonas growth?

A

A: Lag phase (adjustment), exponential phase (fastest growth, ~10 hours), and stationary phase (growth stops).

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5
Q

Q: Why is copper important for Chlamydomonas?

A

A: Copper activates enzymes, aids in iron metabolism, and supports the immune system.

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5
Q

Q: Why is sulfur important for Chlamydomonas?

A

A: Sulfur is essential for protein synthesis, vitamin formation, and detoxification.

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5
Q

Q: How does Chlamydomonas grow?

A

A: Through binary fission, dividing approximately every 10 hours.

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5
Q

Q: How are Chlamydomonas and plants related?

A

A: They share a common ancestor from 1 billion years ago, but plants lost their flagella through evolution.

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5
Q

Q: What conditions are needed to grow Chlamydomonas?

A

A: Moderate light, 24-28°C temperature, and a TAP growth medium with macronutrients and micronutrients.

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5
Q

Q: Why are Chlamydomonas flagella homologous to animal flagella?

A

A: They are structurally and functionally similar, indicating shared ancestry.

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6
Q

Q: What protein polymer forms the structure of cilia/flagella?

A

A: Microtubules, made from alpha-beta tubulin subunits.

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6
Q

Q: What motor protein causes the bending action in cilia/flagella?

A

Dynein

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6
Q

Q: What are ciliopathies?

A

A: Diseases caused by defective cilia, which may result in infertility, respiratory problems, or sensory issues in eyes, nose, and ears.

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6
Q

Q: How many Chlamydomonas proteins are shared with Arabidopsis and humans?

A

A: 33% of its proteins are shared with both.

6
Q

Q: Are prokaryotic and eukaryotic flagella homologous?

A

A: No, they are analogous, having evolved independently through convergent evolution.

7
Q

Q: What is the role of non-motile (sensory) cilia?

A

A: They house sensory proteins crucial for vision, hearing, and smell.

8
Q

Q: What percentage of Chlamydomonas proteins are perfect homologs with humans?

9
Q

Q: What percentage of Chlamydomonas proteins are shared with Arabidopsis?

10
Q

Q: What are the two different uses of light in Chlamydomonas?

A

Light is used for energy (via chloroplasts)
Light provides information (via the eyespot)

11
Q

Q: What technique is used to study proteins in Chlamydomonas?

A

A: SDS-PAGE, which separates proteins based on size.

12
Q

What is an organelle and how does the new definition specify it?

A

A:
An organelle is a specialized structure within eukaryotic cells that is surrounded by a membrane. It must be membrane-bound.

13
Q

Q: Why do Chlamydomonas cells move away from light?

A

A: They move away from light to prevent damage to the chloroplast and other components.

14
Q: What happens during the repolarizing phase in Chlamydomonas?
A: Sodium ions (Na⁺) exit the cell, restoring the negative charge on the inside of the membrane.
14
Do bacteria have organelles?
A: No, bacteria do not have organelles.
14
What is phototaxis?
A: Phototaxis is the movement of an organism towards (+) or away (-) from a light source.
15
What role does light play in action potentials in Chlamydomonas?
A: Light absorption by channelrhodopsin triggers an action potential, which causes movement of the organism either towards or away from the light.
15
Q: What is a Bbs4 mutant and how does it affect Chlamydomonas?
A: A Bbs4 mutant is defective and cannot perform phototaxis, possibly due to a defect in cilia function.
15
Q: What is the structure of the eyespot in Chlamydomonas?
The eyespot is not a membrane-bound organelle and has two parts: Carotenoid granules filled with orange pigment (carotenoid) Part of the plasma membrane containing channelrhodopsin
16
How does the carotenoid layer in the eyespot function?
A: It harvests light, reflects it, and helps direct light to channelrhodopsin. It also shields light from reaching channelrhodopsin when light is coming from the back.
16
Q: What is the process of optogenetics?
Construct genetic material Insert it into neurons Inject into an animal Use laser light to trigger ion channel opening Record the neural response
16
Q: What is channelrhodopsin and how does it function?
Channelrhodopsin is a light-gated ion channel that opens when it absorbs light, allowing calcium ions (Ca²⁺) to enter the cell, causing depolarization.
17
Q: How does chlorophyll absorb light?
A: Chlorophyll absorbs red and blue light by altering carbon-carbon double bonds, raising electrons to an excited state.
17
Q: What happens during the depolarizing phase in Chlamydomonas?
Calcium ions (Ca²⁺) enter the cell, causing a positive charge to accumulate inside, which depolarizes the membrane.
17
Q: What is optogenetics?
A: Optogenetics involves using light to control genetically modified neurons that express channelrhodopsin, triggering action potentials and mapping brain activity.
17
Q: What is opsin and how does it relate to channelrhodopsin?
A: Opsin is a protein that, when bound to retinal, absorbs light. This interaction changes the shape of opsin, which opens the ion channel in channelrhodopsin.
17
Q: Why does chlorophyll appear green?
A: Chlorophyll does not absorb green light, which is why it reflects it and appears green.