covid 19 Flashcards
Coronaviruses and thier name
are a large family of enveloped, single-stranded, RNA viruses that circulate among animals including camels, cats, and bats.
Coronaviruses derive their name from their electron microscopic image, which resembles a crown – or corona
cronavirus progration
2003: sars in chine
2012: mers in ksa
2019: unknown etiology pnemonia in wuhan china
2020: full genome of new corona virus (SARS-CoV-2) had been sequenced
Covid-19 Virus name
The virus was initially referred to as “novel coronavirus 2019” (2019-nCoV) by the WHO
On February 11, 2020, was given the official name SARS-CoV-2 by the International Committee on Taxonomy of Viruses
Covid-19 Virus spike protiens and subunits
SARS-CoV-2 has a SPIKE PROTEIN that is composed of two subunits, S1 and S2
The S1 subunit contains a receptor-binding domain that recognizes and binds to the host ACE2 receptors
The S2 subunit mediates virus entry into the cell and plays a role in the increased viral infectivity
the pathological reason for covid-19 deaths is
“cytokine storm” which is also called “cytokine storm syndrome”
Cytokine storm is described as “a systemic inflammatory response to infections and drugs and leads to excessive activation of immune cells and the generation of pro-inflammatory cytokines”
IL-6, IL-1β & TNF-α compared to those who are moderately ill
Postmortem examinations of covid 19 patienrs
Excessive infiltration of pro-inflammatory cells, mainly involving macrophages and T-helper 17 cells, has been found in lung tissues of patients with COVID-19 by postmortem examination.
Pathological Consequences of cytokine syndrome
The cytokine storm can lead to
* apoptosis of epithelial cells and endothelial cells
* vascular leakage
* ARDS, other severe syndromes, and death
clinical presentation and incubation period
The disease caused by the SARS-CoV-2 virus is known as coronavirus disease -2019 or COVID-19.
The majority of patients will be asymptomatic
The incubation period for COVID-19 extend to 14 days, with a median time of 4-5 days from exposure to symptoms onset. This varies according to strains.
S & S of covid 19
Fever or chills
Shortness of breath or difficulty breathing (more common in severe disease)
Fatigue & body aches
Headache
New loss of taste or smell
GI symptoms e.g. Nausea or vomiting, Diarrhea
Congestion or runny nose
Sore throat
COVID-19 Testing Methods
- Antigen Testing
- RT-PCR (Gold standard)
- Serologic (Antibody) testing
- Antigen Testing
Antigen tests are **immunoassays **designed to detect specific viral antigens, such as COVID-19 proteins. These tests are typically performed using nasopharyngeal or nasal swab specimens, which are placed directly into the assay’s extraction buffer or reagent. Key characteristics of antigen testing include:
* given result in 15 mins
* inexpensive
* less sensitive
RT-PCR
Specimen Collection: Nasopharyngeal swabs are preferred. Proper swab insertion is critical to avoid false negative results.
Transport and Storage: Swabs should be transported to the lab in universal transport media or saline and stored at 2–8°C. They should not be sent via pneumatic tubes.
Sensitivity: RT-PCR is highly sensitive and can detect the virus even in asymptomatic patients.
Viral Load: Viral loads are higher in severe disease compared to mild cases. Most patients with mild disease test negative by 10 days post-symptom onset, while those with severe disease may test positive for up to 20 days. The virus may be detectable until death in some non-survivors.
Serologic (Antibody) testing
Serologic tests detect antibodies (IgG and/or IgM) that form in response to SARS-CoV-2 infection. Techniques used include ELISA and chemiluminescent
Antibodies may take up to 14 days to form, making these tests unsuitable for early diagnosis.
While not ideal for diagnosing active infections, antibody tests are useful for detecting past infection and assessing potential immunity.
Treatments for COVID-19
- Antimalarials
- Antiviral Therapy
- Dexamethasone
- Biologics
- Convalescent Plasma
- Antimalarials
Hydroxychloroquine: Initially showed promise as it interfered with SARS-CoV entry into cells (2002 study).
Early reports from China and France suggested that patients with severe symptoms of COVID-19 improved more quickly when given antimalarials.
The antimalarials appear to work through 2 mechanisms:
* they inhibit fusion of the virus to the cell
* if the virus enters the cell, the drugs kills it before it can replicate.
Azithromycin: An antibiotic with anti-inflammatory properties.
However, with Covid-19, human studies suggest no benefit and possibly a higher risk of death due to fatal cardiac arrhythmias caused by D/D interaction.