Control of Metabolism Flashcards
how is the atp pool buffered during intense exercise
by PCr
powering muscle contraction with glucose
- ATP from glycolysis
- intense exercise - PCr buffers ATP pool (though PCr is limited so must also mobilise glycogen
- anaerobic metabolism producing lactate - possible for short periods only
- prolonged exercise - aerobic metabolism of glucose, producing ATP more slowly, by OXPHOS
liver and blood glucose
- after a meal - insulin stimulates uptake of glucose, which is converted to glycogen, FAs, used as fuel
- after a fast - glucagon stimulates glycogenolysis, glucose release, mobilisation of FAs from adipose
3 key control points of glycolysis
hexokinase, PFK1, pyruvate kinase - irreversible steps with larger changes in gibbs free energy
what happens to lactate and alanine from anaerobic metabolism in muscle
released into blood and converted into glucose in the liver - glucose then released into blood and transported to muscle
= the cori cycle
6 ways to control enzyme activity
- substrate level control
- cooperativity
- allosteric regulation
- covalent modification
- substrate cycling
- control through changes in enzyme concentration
substrate level control
when most useful?
- enzyme has greatest sensitivity to changes in [S] when [S}
example of substrate level control
glucokinase - an isoform of hexokinase with a high Km for glucose
- B cell - glucokinase is glucose sensor, increase glycolytic flux and insulin release
- liver - glucose uptake
cooperativity definition
binding of first substrate affects binding of subsequent
increases sensitivity
concerted model of cooperativity
binding of first substrate shifts equilibrium in favour of relaxed form which has higher affinity for further substrate
sequential model of cooperativity
binding of first substrate causes conformational change from T to R (higher aff), this causes second subunit to change from T to R, facilitates binding of 2nd substrate
hill coefficient
protein p with n binding sites for ligand L
n=hill coefficient, a measure of cooperativity (< no binding sites)
(read eqn)
allosteric effectors
bind to a site on the enzyme other than the substrate binding site and regulate enzyme activity
eg activator could produce a conformational change to stabilise the R state
allosteric effectors in muscle glycolysis
- G6P allosterically inhibits muscle hexokinase
- PFK1 allosterically inhibited by ATP and activated by AMP
- PK allosterically activated by F16BP
sensitivity of … substrate level control, cooperativity, allostery
substrate level = linear response
others are more sensitive, sigmoidal rather than hyperbolic response curves
substrate cycling example
F6P, F16BP, via PFK1 and F16BPase
AMP allosterically activates PFK and inhibits F16BPase, allowing massive changes in flux with small changes in AMP levels/ the enzyme activities
- payed for by ATP, energy released as heat
types of covalent modification
phosphorylation
acetylation
shape of curve with cooperativity
sigmoidal
example of cooperativity in a monomeric enzyme
glucokinase = monomeric with 1 glucose binding site. has 2 slowly interconverting forms
- at low S, the low affinity E’ form dominates
- at high S, the high affinity E form dominates
this gives a sigmoidal saturation curve
AMP changes during exercise and allostery
- large increase in AMP during exercise as 2ADP==>ATP+AMP by adenylate kinase
- PFK1 activated by AMP, increases F16BP steady state
- increases allosteric act of PK
- decrease in steady state G6P, less inhibition of hexokinase
so a coordinated increase in activities of these enzymes
protein phosphorylation
- at OH groups of ser, thy, tyr
- introduces neg charge so can cause large conformational change
- by kinases, removed by phosphatases
these enzymes are promiscuous - have many targets. also many regulatory subunits
enzymes of glycogen metabolism
glycogen synthase converts UDPG to glycogen
phosphorylase converts glycogen to G1P, which is in equilibrium with G6P
how is gluconeogenesis like the reverse of glycolysis?
most of the reactions are at equilibrium so readily reversible for gluconeogenesis
- the HK, PFK1 and PK reactions are not (these ones use ATP) so different enzymes are required for the reversal:
F16BPase and pyruvate carboxylase+phosphoenolpyruvate carboxykinase
glycogen synthase and phosphorylase activities
don’t want simultaneous activity as will just turn over ATP
Phosphorylase
- AMP or phosphorylation converts to more active form (R form - allo, phosphorylase b->a - covalent)
- negative phosphate interacts with positive arginines, causing a large conformational change of a helices. exposes more + args of active site which are able to bind the negative phosphate of the substrate
lysine acetylation
almost every metabolic enzyme of the cell is acetylated - widespread importance in control
T,R, b,a forms of enzyme
T/R to do with allosteric regulation
a/b to do with activation by phosphorylation
adrenaline cascade and action on phosphorylase and glycogen synthase
- adrenaline activated adenylate cyclase
- cAMP
- cAMP activates PKA
- PKA activates phosphorylase kinase and inactivates glycogen synthase (-> b form)
- phosphorylase kinase phosphorylases and activates phosphorylase (-> a form)
phosphorylase kinase
- activated by phosphorylation by PKA
- activates phosphorylase and inactivates glycogen synthase by phosphorylation
protein phosphatase 1
reverses phosphorylation of phosphorylase, glycogen synthase, to decrease the rate of glycogen breakdown. GS and P are within the glycogen particle
- PP1 doesn’t have affinity for the glycogen particle until it associates with a G subunit
- PKA phosphorylates the G subunit, inactivating it (ensuring proteins remain phosphorylated, by turning off the dephosphorylation)
- phosphorylation of the inhibitor of PP1 activates the inhibitor, so inhibits the phosphatase
glycogen synthase and phosphorylase activation states
GS=active when dephosphorylated
phosphorylase is inactive when dephosphorylated
insulin and glycogen synthesis
- insulin activates insulin sensitive kinase and PP1
- dephosphorylate glycogen synthase - activating
- dephosphorylate phosphorylase kinase - inactivating
phosphorylate G subunit of PP1 at a different site, activating the phosphatase to enter glycogen particles
allosteric regulation of liver phosphorylase
how does it differ from regulation of muscle phosphorylase
- no large variation in AMP so AMP doesn’t activate the b form
- level of a form is regulated by glucose binding
- phosphorylase a is a glucose sensor in the liver, binding of glucose to phosphorylase converts it to an inactive T form, promotes dephosphorylation by PP1 (inhibit further production of glucose by liver glycogenolysis when BGC is high)
- also activate glycogen synthesis as phosphorylase a->b leads to PP1 release, which binds tightly to a form, PP1 can then activate glycogen synthase
((there is much more phosphorylase than PP1 so most phosphorylase has to be converted to the bform to release sufficient PP1 to increase glycogen synthase activity))
AMP dependent protein kinase
allosteric activation by AMP. phosphorylation of AMPK by and upstream kinase is needed for this.
AMPK limits further utilisation of ATP by inhibiting glycogen, FA and cholesterol synthesis.
advantages of protein phosphorylation for metabolic control
- signal ampl as enzymes have multiple targets
- coordination between regulatory networks
- increase sensitivity - small change in initial signal causes large change in end product (small change in relative kinase and phosphatase Vmaxes causes larger change in proportion of phosphorylated substrate with enzymes close to saturation (‘switch’ - more binary response) … is enzymes not near saturation, decrease in protein conc decreases kinase activity, slower change
- regulation of kinase and phosphatase in opposite directions gives greater sensitivity
purpose of PP1
removes all the phosphates involved in the regulation of glycogen metabolism, decreases rate of glycogen breakdown and accelerates glycogen synthesis
AMP
a sensitive indicator of cellular energy levels via the adenylate kinase equilibrium
what enhances adenylate cyclase activity in the liver
glucagon
B-adrenergic agonists
increases cAMP, activate PKA amd phosphorylate 6PF2K/F26BPase
what is 6PF2K/F26BPase?
a bifunctional enzyme found in the liver which is phosphorylated by PKA, this inhibits the kinase activity and stimulates the phosphatase activity so get more F6P and less F26BP
F26BP and liver glycolysis/ gluconeogenesis
allosteric activator of PFK1 and inhibitor of F16BPase
causes enhanced glycolysis and inhibition of gluconeogenesis
pyruvate kinase - allostery
covalent mod
inhibited by ATP and alanine, activiated by F16BP (feedforward)
inhibited by phosphorylation prior to saturation
Ca2+ linked hormones and gluconeogenesis
Ca2+-CaM dependent protein kinase phosphorylates pyruvate kinase, inhibiting it.
so promoting gluconeogenesis
why does elevated cAMP activate glycolysis in muscle but inhibit glycolysis in liver?
in the liver, 6PF2K/F26BPase and PK are phosphorylated and inhibited, whereas the musce isoforms lack a PKA phosphorylation site
PEPCK acetylation
enhanced by high glucose, decreased by high amino acid. promotes degradation of the protein
regulation of glucokinase by a regulatory protein
not inhibited by G6P but is inhibited by a regulatory protein. F6P binds the regulatory protein and reinforces the inhibition
the inhibition is antagonised by F1P - ensures liver takes up both glucose and fructose following a meal.(?)
glucose transport
GLUT1,3 = present in all cells, low Km GLUT2 = liver, pancreatic B cells, high Km so uptake dep on BGC GLUT4 = muscle, adipose, recruited to plasma membrane by insulin
control through changes in enzyme concentration
longer term, change gene expression