Clinical bacteriology Flashcards

1
Q

Gram positives

A

Can make exotoxins
Cocci
- Catalase pos (clusters) –> staph
- Catalase neg (chains) –> strep

Rods (bacilli)

  • Clostridium
  • Corynebacterium
  • Listeria
  • Bacillus
  • Mycobacterium

Branching enzymes

  • Anaerobe - not acid fast = actinomyces
  • Aerobe - acid fast = nocardia
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2
Q

Catalase positive cocci

A

Clusters, staphylococcus; coagulase pos or neg

  • Coagulase pos = S. aureus
  • Coagulase neg = S. epidermidis, S. saprophyticus

“NO StRESs
- Novobiocin - Saphrophyticus Resistant; Epidermidis Sensitive

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3
Q

Catalase negative cocci

A

Chains, steptococcus –> get a, B, gamma hemolytic bacteria

“OVRPS” (overpass) <– B-hemolytic
- Bacitracin - group B strep Resistant; group A sensitive

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4
Q

a-hemolytic bacteria

A

Partial hemolysis; form green ring around colonies on blood agar

  • Viridans - no capsule, catalase neg, optochin resistant, not lysed by bile
  • S. pneumoniae - has capsule, catalase neg, optochin sensitive

“OVRPS”

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5
Q

B-hemolytic bacteria

A

Complete hemolysis; clear ring around colonies on blood agar

  • S. aureus - catalase and coagulase +
  • Group A strep (strep pyogenes) - catalase neg, bacitracin sensitive
  • Group B strep (strep agalactiae) - catalase neg, bacitracin resistant

“B-BRAS”

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6
Q

Staph aureus

A

Gram positive, clusters (catalase +)
- Protein A virulence factor - binds Fc of IgG –> inhibit complement activation/phagocytosis

Skin infections, toxin-mediated disease, MRSA

Toxin mediated:

  • S. aureus food poisoning = ingestion of preformed enterotoxin (heat-stable), short incub (2-6hr)
  • TSST - binds MHCII/T-cell receptor, get polyclonal T-cell activation –> fever, rash, vom, shock, death
  • SSSS (scalded skin syndr) - makes exfoliative exotonin (+Niklosky sign)

Coagulase + = bad bc makes fibrinogen –> fibrin, coats bacteria and protects from phagocytosis

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7
Q

Staph epidermidis

A

Biofilms –> infects prosthetic devices/catheters
- Catalase negative, novobiocin sensitive

“NO StRES”

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8
Q

Staph saphrophyticus

A

2ns most common uncomplicated UTI in women (#1 = E. coli)
- Catalase negative, novobiocin resistant

“NO StRES”

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9
Q

Streptococcus pneumoniae

A

S. pneumoniae, lancet-shaped gram +s
- a-hemolytic, encapsulated, IgA protease, optochin sensitive

  • Causes MOPS = meningitis, otitis media, pneumonia, sinusitis
  • Pneumococcus - rusty colored sputum, sepsis in sickle cell anemia/spenectomy
  • If remove capsule, no virulence)

“MOPS are MostOPtochin Sensitive”

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10
Q

Viridans group strep

A

*Make dextrans from sucrose - help adhere to surfances (tooth caries, heart valves)

S. mutans (carries), S. sanguinis (endocarditis at damaged valves)
- a-hemolytic (partial), no capsule, optochin resistant

  • S. sanguinis makes dextrans (bind fibrin-plt aggregates on damaged valves)
  • Why we give abx before dental procedures in pts w/ heart valves
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11
Q

Strep pyogenes

A

Group A strep, B-hemolytic (catalase neg)

  • Pyogenic - pharyngitis, cellulitis, impetigo
  • Toxigenic - scarlet fever, TS-like syndrome, nec fasciitis
  • Immunologic - rheumatic fever (Jones criteria), acute glomerulonephritis

Pharyngitis can cause rheumatic “phever” and glomerulonephritis
- Impetigo - more before glomerulonephritis than pharyngitis

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12
Q

Strep agalactiae

A

Group B strep, colonizes vagina, B-hemolytic (catalase neg)

  • Pneumonia, meningitis, sepsis in Babies
  • Makes CAMP which incr hemolysis from s. aureus (Hippurate test +)
  • Screen pregnant women at 35-37 wks, if positive tx intrapartum w/ penicillin

“Group B for Babies!”

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13
Q

JONES criteria

A

Rheumatic fever (from s. pyogenes):

  • Joints - polyarthrtis
  • <3 - carditis
  • Nodules - subcutaneous
  • Erythema marginatum
  • Sydenham chorea
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14
Q

Scarlet fever

A

From S. pyogenes:

  • Scarlet rash (sandpaper texture)
  • Strawberry tongue
  • Circumoral pallor
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15
Q

Enterococci

A

Group D strep (E. faecalis), no hemolysis

  • Grows in bile/acidic env (nl in GI/GU)
  • VRE = vanc resistant enterococci –> cause nosocomial infection
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16
Q

Strep bovis

A

Group D strep, colonizes gut
- Bacteremia + acute endocarditis in colon cancer pts

“Bovis in Blood = Cancer in the Colon”

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17
Q

Rods

A

Bacilli

  • Clostridium
  • Corynebacterium
  • Listeria
  • Bacillus
  • Mycobacterium
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18
Q

Corynebacterium diptheriae

A

Causes diptheria - via endotoxin (from B-prophage)

  • Endotoxic inhibits protein synthesis (inhibit ADP-ribosylation of EF2)
  • Sx: pseudomembranes (gray-white membrane), lymphadenopathy, myocarditis, neuro toxicity (toxin penetrates blood:brain)
  • Dx - gram + with metachromatic (blue/red) granules + Elek test for toxin
  • Prevention - toxoid vaccine

“ABCDEFG” - ADP ribosylation, B-prophage, Corynebacterium, Diptheriae, EF2, Granules

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19
Q

Bacterial spores

A

Some bacteria make spores when nutrients limited

  • Spores = heat/chemical resistant
  • Must autoclave to kill spores (121C for 15min)*
  • Dipicolinic acid = core, no metab activity

Causing spores:

  • Soil - bacillus anthracis, Clostridium perfringens, C. tetani
  • Other: B. cereus, C. botulinum, Coxiella burnetii
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20
Q

Clostridia types

A

Gram positive, spore-forming, obligate anaerobic bacilli

  • C. tetani
  • C. botulinum
  • C. perfringens
  • C. difficile
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21
Q

C. tetani

A

Exotoxin = tetaniospasmin

  • Protease - cleaves release proteins for NTs
  • Blocks glycine/GABA release (inhib NTs) from Renshaw cells in spinal cord
  • Spastic paralysis, trismus (lockjaw), risus sardonicus (grin)
  • Vaccine = inactivated tetanus toxin
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22
Q

C. botulinum

A

Exotoxin = botulinum toxin –> preformed, heat-labile

  • Protease - cleaves release proteins for NTs
  • Inhibits ACh release at NMJ
  • Adults - eat preformed toxin (canned food, good anaerobic env)
  • Babies - eat spores in honey = floppy baby syndrome
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23
Q

C. perfringens

A

Toxin = a-toxin (lecithinase = phospholipase)

  • Causes myonecrosis (gas gangrene) and hemolysis
  • Myonecrosis from plt aggregation, adherance molecules, vasoocclusion + necrosis
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24
Q

C. difficile

A

Toxin A = enterotoxin, binds brush border of gut
Toxin B = cytotoxin - pseudomembranous colitis, diarrhea
- Secondary to abx use (amp/clinda)
- Dx - toxins in stool
- Tx = metranidazole or oral vanc

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25
Anthrax
Bacillus anthracis - spore-forming rod, makes anthrax toxin - Only bacteria w/ polypeptide capsule (D-glutamate) Cutaneous anthrax - boil lesions, painless + become necrotis [rarely progresses] Pulmonary anthrax - Inhalation of spores, flu-like --> fever --> pulm hemorrhage --> mediastinitis --> shock *Woolsorter's disease - inhaled from contaminated wool
26
Bacillus cereus
Food poisoning, spores survive cooked rice - Emetic type: * Cereulide = preformed toxin, get w/ rice or pasta, n/v in 1-5 hrs - Diarrheal type: * Watery, non-bloody diarrhea + GI pain, 8-18hr *Reheated rice syndrome*
27
Listeria monocytogenesis
Facilitative INTRACELLULAR microbe - Rocket-tails (actin polym) allow them to move in cytoplasm to cell membrane (avoid Ab); tumbling motility * *Make LPS (only gram + to do this!) * *Narrow B-hemolytic, replicate at refrig temp (refrig food) - Ingesting unpasteurized dairy/deli meat, transplacental or vaginal at birth - Baby: amnionitis, septicemia, spont abortion, granulomatosis, meningitis - Immunocompromised - meningitis - Healthy - mild GI disease Tx - GI = self-limited - Ampicillin - empiric meningitis tx (babies, immunocompromised, elderly)
28
Branching filaments
Both gram positive - Actinomyces - not acid fast, in normal oral flora, get oral/facial abscesses with draining yellow "sulfur granules" * A. israelii = actinomyces, yellow sand in israel - Nocardia - acid fast, in soil, get pulm infections in immunocompromised * Tx = sulfonamides
29
Mycobacteria
All are acid-fast organisms - Mycobacterium TB = TB - M. kansasii - pulm, TB-like sx (water contaminant of municipal H2O system, not nature) - M. avium-intracellulare (disseminated non-TB in AIDS) --> ppx = azithromycin
30
TB
Primary - Ghon focus (mid lung) - Heal by fibrosis - immunity/hypersensitivity --> tuberculin + - Progressive lung disease (in HIV, malnutrition) = rare - Severe bacteremia = miliary TB = death - Preallergic lymphatic/hematogenous dissemination --> dormant tubercle bacilli in organs --> reactivation later Secondary TB - reinfected, fibrous caseating granulomas (upper lobes) - See w/ reactivation of TB of lunds - Extrapulm TB - CNS (tuberculoma or meningitis), vertebral body (Pott)
31
PPD reading
- PPD pos if current infection, past exposure or BCG vaccine - PPD neg if no infection, anergic (steroid, malnutrition, immunocompromised), or sarcoid - TH1-cell mediated delayed hypersensitivity response * IFN-gamma release assay has fewer false + (esp BCG vaccine)
32
TB vs. sarcoidosis
``` TB = caseating granulomas Sarcoidosis = non-caseating granulomas ```
33
Leprosy
Hansen disease; from mycobacterium leprae - Acid-fast bacillus - Likes cool temperatures, infects skin/superficial nerves ("glove + stocking" sensation loss) * Can't grow in vitro - Reservoir = US armadillos Lepromatous form - diffusely on skin, leonine facies (lion-like), communicable - Low cell-mediated immunity (humoral TH2 response) * Tx = dapsone, rifampin, clofazimine 2-5 yrs Tuberculoid form - hairless plaques - High cell-mediated immunity (largely TH1 response) * Tx = dapsone + rifampin x6mo
34
Gram negative bacteria
- Diplococci - Coccoid rods - Rods - lactose fermenter vs. lactose non-fermenter - Oxidase +, comma shaped
35
Penicillin and gram negatives
Gram negatives resistant to penicillin G/vanc! - May be susceptible to derivatives (ampicillin, amoxicillin) * Outer membrane layer inhibits entry of penicillin and vancomycin
36
Diplococci
Gram negative bacteria: - Neisseria meningitidis - Neisseria gonorrhoeae * Both make IgA protease
37
Neisseria gonorrhoeae
Diplococci, gram negative bacteria, STD - No polysaccharide capsule - No maltose fermentation (ferment glucose) - No vaccine bc rapid pilus proteins - Sx: gonorrhea, septic arthritis, neonatal conjunctiv, PID/Fitz-Hugh-Curtis syndrome - Tx = ceftriaxone (+ azithro/doxy for chlamydia co-infection) *Opaque exudate, intracellular organisms (in neutrophils)*
38
Neisseria meningitidis
Diplococcia, gram negative bacteria - Polysaccharide capsule - Maltose and glucose fermentation - Vaccine (except type B) - Have in respiratory/oral secretions --> pili adhere to oral mucosa - Sx: meningococcemia (purpuric lesions, shock, death), meningitis, Waterhouse-fridrichsen syndrome (adrenal destroyed) - Tx: ceftriaxone or penicillin G
39
"Coccoid" rods
Gram negative bacteria - H. influenzae - Pasteurella - Brucella - Bordetella pertussis
40
Haemophilus influenza
Gram negative coccoid rod, aerosol transmission - H. influenza B (type B) = CAPSULE, most invasive - Makes IgA protease - Cx on chocolate agar w/ factors V and X for growth * Can grow with E. coli - provides factor V - Sx: haEMOPhilus - epiglottitis (cherry red), meningitis, otitis media, pneumonia - Tx mucosal - amoxicillin, clavulanate - Tx meningitis - ceftriaxone; rifampin ppx for contacts
41
H. influenza B vaccine
Type B capsular polysaccharide conjugated to protein | - Give age 2-18 mos
42
Rods
Lactose fermenter vs. nonfermenters Lactose fermenters: - Fast fermenters: Klebsiella, E. coli, Enterobacter - Slow fermenters: Citrobacter, Serratia * Grows on "macConKEE'S agar" Lactose non-fermenters - Oxidase + = pseudomonas - Oxidase neg = shigella, salmonella, yersinia, proteus
43
E. coli
``` Gram negative, lactose fast-fermenter Virulence factors: - Fimbriae - cystitis/pyelonephritis - K capsule - pneumonia, neonatal meningitis - LPS endotoxin - septic shock ``` EIEC - Invasive; dysentery ETEC - Traveler's diarrhea (watery) EPEC - Pediatric diarrhea EHEC - Hemolytic-uremic syndrome
44
EIEC
Microbe invades intestinal mucosa --> necrosis and inflammation - Presents similarly to shigella
45
ETEC
Heat-labile (HL) and heat-stable (HS) enterotoxins - No inflammation/invasion --> TOXIN mediated *Travel's diarrhea from enteroToxins
46
EPEC
No toxin made - bacteria adheres to apical surface, flattens villi, prevents absorption in intestine *Diarrhea usually Pediatric
47
EHEC
Dysentery --> toxin alone causes necrosis/inflam O157:H7 most common - Shiga-like toxin, inactivate 60S subunit of ribosome, causes Hemolytic-uremic syndrome (anemia, thrombocytopenia, acute renal failure) *aka STEC (shiga toxin-producing E. coli) - Microthromi form on epithelium damaged by toxin --> mechanical hemolysis (schistocytes), decr renal blood flow **Microthrombi also consume plts = thrombocytopenia (thrombi + thrombocytopenia) *Doesn't ferment sorbitol or make glucuronidase (all other E. coli do)
48
Klebsiella
Gram negative, lactose fast-fermenter - Normal intestinal flora --> lobar-pneumonia in alcoholics/DM when aspirated - "Red currant jelly" sputum (=intusussception of mouth!) - Nosocomial UTIs too 4A's: aspiration pneumonia, abscess in lung/liver, Alcoholics, diAbetics
49
Shigella
Gram negative, lactose non-fermenter, oxidase neg - No flagella, cell-to-cell transmission (no hematogenous) * Humans/primates = only animal reservoir - Shiga toxin inactivates 60S - invades intestinal mucosa (binds mucosal M cells) --> PMN response; often causes bloody diarrhea - Doesn't make hydrogen sulfide - Abx - shorten fecal excretion of organism
50
Salmonella
Gram negative, lactose non-fermenter, oxidase neg - Flagella ("salmon swim"), can disseminate hematogenously * Animal reservoirs - Invades intestinal mucosa --> monocytic response; can cause bloody diarrhea - Makes hydrogen sulfide - Abx - prolong fecal excretion of organism
51
Salmonella typhi
Typhoid fever, only in humans - Rose spots on abd, fever, HA, diarrhea - Can stay in gallbladder = carrier state
52
Yersinia enterocolitica
Gram negative, lactose non-fermenter, oxidase neg - From pet feces (puppies), contaminated milk or pork - Sx - mesenteric adenitis, mimic Crohn's/appendicitis
53
Pseudomonas aeruginosa
Aerobic gram negative, lactose non-fermenter, oxidase positive - Makes pyocyanin --> blue-green pigment on cx, smells like grapes - Comes from contaminated water - Makes endotoxin (fever, shock) and endotoxin A (inactivates EF-2) - Sx: wound/burns + *PSEUDOmonas = pneumonia (CF, biofilm), sepsis, external otitis, UTI, Drug use, Diabetic Osteomyelitis, hot-tub folliculitis (papulopustular rash) - Tx: amingoglycoside + extended-spectrum penicillin Ecthyma gangrenosum - necrotic cutaneous lesion, immunocompromised pts, from pseudomonas * Aeruginosa = Aerobic; water connection w/ blue-green pigment * contaminated water, burn victims, CF (chronic pneumo)
54
Oxidase +, comma shaped gram neg
- Campylobacter jejuni - grow at 42C - Vibrio cholerae - grow in alkaline environment - Heliobacter pylori - produce urease
55
Campylobacter jejuni
Gram negative bacteria, comma/S shaped, oxidase +, grows at 42C (campylobacter by hot camp fire) - Fecal-oral (meats/unpasteurized milk, puppies) * 500 org for innoculation - Sx: blood diarrhea (esp in kids) * *Common cause of Guillain-Barre syndrome + reactive arthritis
56
Vibrio cholerae
Gram negative bacteria, comma/S shaped, oxidase +, grows in alkaline media - Enterotoxin permanently activates Gs --> cAMP - Profuse rice-water diarrhea via enterotoxin - Endemic to dx countries; need prompt ORS
57
Heliobacter pylori
Gram negative bacteria, curve shaped, oxidase, catalase +; produces urease - Risks: gastritis, PUD (esp duodenal), lymphoma, adenocarcinoma, SMOKING - Creates alkaline environment - Tx = triple therapy (PPI, clarithromycin, amox/metronidazole) *Dx - urea breath test (urea producing) or fecal antigen test
58
Legionella pneumophilia
Gram negative rod, need silver stain - Grow on charcoal yeast w/ iron/cysteine - Aerosol transmission from water source (A/C, hot tub) --> NO PERSON-TO-PERSON - Tx: macrolide (eryth/clarith/azithro) or quinolone Legionnaire's disease = severe pneumonia, fever, GI/CNS sxs **Think Legionella when pneumonia and GI!!!** "Legionnaire - silver helmet, sitting w/ charcoal and iron dagger
59
Spirochetes
Spiral-shaped bacteria with axial filaments BLT - Borrelia (Big) <-- dark field microscopy
60
Borrelia
Spirochete; Lyme disease = borrelia burgdorferi - Transmitted by tick Ixodes; reservoir = mice Disease progr: 1) Early = flu-like, erythema chromicum migrans (Bull's eye/target) 2) AV block, Bell's palsy 3) Chronic asym jt arthritis, encephalopathy - Tx: doxycycline or ceftriaxone (penicillin-type) *FAKE = facial n palsy, arthritis, kardiac block, erythema migrans*
61
Leptospira interrogans
Spirochete, found in water contaminated w/ animal urine - Sx - flu-like, jaundice, photophobia conjunctival suffusion (red, no exudate) - See in surfers in the tropics (Hawaii) Weil disease - iscterohemorrhagic leptospirosis = severe form w/ jaundice + azotemia (liver/kidney disfxn)
62
Treponema pallidum
Spirochete, causes syphilis - Primary - painless chancre - Secondary - disseminated, rash on palms/soles - Tertiary - gummas, neurosphyilis (tabes dorsalis), Argyll robertson pupil - Congenital *VDRL/RPR = non-specific; FTA-ABS confirm
63
Primary syphillis
Localized - painless chancre | - Use dark-field microscopy to see treponema from chancre
64
Secondary syphillis
Disseminated - constitutional sx, maculopapular rash on hands/soles, condylomata lata - Confirm with dark-field microsc - Eventually get latent syphillis (w/o sxs)
65
Tertiary syphillus
Gummas (chronic granulomas), aortitis (vasa vasorum destruction, weakened aorta w/ AA-not dissection), neurosyphilis (tabes dorsalis), argyll robertson pupil - Sx - broad-based ataxia, +Romberg, charcot join, stroke w/o HTN - Dx - spinal fluid w/ VDRL/RPR (neurosyph)
66
Congenital syphilis
Saber shins, saddle nose, CN VIII deafness, Hutchinson teeth, mulberry molars - Tx mom early (transmission after T1)
67
Argyll Robertson pupil
Constricts with accomodation, but does not react to lifht - Tertiary syphilis "Prostitute pupil" - accomodates but doesn't react
68
VDRL False positives
Nonspecific, react with beef cardiolipin | - VDRL - viruses (mono, hepatitis), drugs, rheumatic fever, lupus/leprosy
69
Jarisch-Herxheimer rxn
Flu-like syndrome after start abx bc of killed bacteria releasing pyrogens
70
Gardnerella vaginalis
Pleomorphic gram-variable rod - vaginosis - Gray vaginal discharge, fishy smell - Associated with sexual activity (not STD) - Overgrowth of certain anaerobic bacteria in vagina * Microscopy - clue (vagina epithelial) cells covered in bacteria - Tx: metronidazole or clinda "I have no CLUE why I smell FISH in the VAGINA GARDEN!"
71
Rickettsial disease and vector-borne illness
Tx for all = DOXY! Rash common: "Rickettsi on wRists, Typhus on Trunk" - Rocky Mountain spotty fever - Typhus Rash rare: - Ehrlichiosis - Anaplasmosis - Q fever
72
Rocky mountain spotted fever
Rickettsia rickettsii --> tick vector - South atlantic (NC) - Obligate intracellular organisms - need CoA/NAD+ (can't make ATP) Sx triad: HA, fever, rash - Rash starts on wrists/ankles --> spreads to trunk, palms, soles * Coxsackievirus A (hand/foot/mouth), RMSF, 2 syphillis --> all rashes w/ palms+soles
73
Typhus
Endemic (fleas) --> R. typhi Epidemic (human body louse) - R prowazekii - Rash starts centrally, moves out; spares palms/soles
74
Ehrlichiosis
Ehrlichia --> tick vector | - Monocyte w/ morulae (berry-like inclusion) in cytoplasm
75
Anaplasmosis
Anasplasma --> tick vector | - Granulocyte with morulae in cytoplasm
76
Q fever
Coxiella burnetii - no arthropod vector - Tick feces/cattle placenta release spores, inhale as aerosols - Sx = pneumonia Q fever = Queer bc no arthropod vector, no rash --> survives outside endospore - Related to rickettsia genus (not part)
77
Chlamydiae
Obligate intracellular (cloak = chlamys) organisms - Elementary body - infectious, enters via endocytosis --> becomes reticulate body - Reticulate body - replicates in cell via fusion --> reorganize into elementary body * Cycle - Dx - cytoplasmic inclusions on Giemsa/fluorescent ab-stained smear - Tx - azithromycin or doxy
78
Types of chlamydia
- C. trachomatis - C. pneumoniae + C. psittaci - atypical pneumonia (aerosol = atypical transmission) * Psittaci = avian reservoir
79
Chlamydia trachomatis
- Sx - reactive arthritis (Reiter syndr), follicular conjunctivis, nongonococcal urethritis, PID Type A,B,C - Africa, blindness, chronic infection Types D-K - urethritis/PID, ectopic pregn, neonatal pneumonia (staccato cough), conjunctivitis * D-K = everything else Type L1,L2,L3 - lymphogranuloma verenum = small, painless ulcers on genitals --> swollen painful inguinal LNs that ulcerates (buboes)
80
Myoplasma pneumoniae
No cell wall (sterols for stability), not seen on gram stain Atypical "walking" pneumonia, pts <30yo - Insidious onset, HA, nonprod cough, patchy/diffuse interstitial infiltrates - XR looks worse than pt - Cold agglutinins (IgM) - can agglutinate or lyse RBCs * Often in military recruits/prisons* Tx - macrolide, doxy, fluoroquinolone. Penicillin doesnt work bc no cell wall!