Clinical bacteriology Flashcards
Gram positives
Can make exotoxins
Cocci
- Catalase pos (clusters) –> staph
- Catalase neg (chains) –> strep
Rods (bacilli)
- Clostridium
- Corynebacterium
- Listeria
- Bacillus
- Mycobacterium
Branching enzymes
- Anaerobe - not acid fast = actinomyces
- Aerobe - acid fast = nocardia
Catalase positive cocci
Clusters, staphylococcus; coagulase pos or neg
- Coagulase pos = S. aureus
- Coagulase neg = S. epidermidis, S. saprophyticus
“NO StRESs
- Novobiocin - Saphrophyticus Resistant; Epidermidis Sensitive
Catalase negative cocci
Chains, steptococcus –> get a, B, gamma hemolytic bacteria
“OVRPS” (overpass) <– B-hemolytic
- Bacitracin - group B strep Resistant; group A sensitive
a-hemolytic bacteria
Partial hemolysis; form green ring around colonies on blood agar
- Viridans - no capsule, catalase neg, optochin resistant, not lysed by bile
- S. pneumoniae - has capsule, catalase neg, optochin sensitive
“OVRPS”
B-hemolytic bacteria
Complete hemolysis; clear ring around colonies on blood agar
- S. aureus - catalase and coagulase +
- Group A strep (strep pyogenes) - catalase neg, bacitracin sensitive
- Group B strep (strep agalactiae) - catalase neg, bacitracin resistant
“B-BRAS”
Staph aureus
Gram positive, clusters (catalase +)
- Protein A virulence factor - binds Fc of IgG –> inhibit complement activation/phagocytosis
Skin infections, toxin-mediated disease, MRSA
Toxin mediated:
- S. aureus food poisoning = ingestion of preformed enterotoxin (heat-stable), short incub (2-6hr)
- TSST - binds MHCII/T-cell receptor, get polyclonal T-cell activation –> fever, rash, vom, shock, death
- SSSS (scalded skin syndr) - makes exfoliative exotonin (+Niklosky sign)
Coagulase + = bad bc makes fibrinogen –> fibrin, coats bacteria and protects from phagocytosis
Staph epidermidis
Biofilms –> infects prosthetic devices/catheters
- Catalase negative, novobiocin sensitive
“NO StRES”
Staph saphrophyticus
2ns most common uncomplicated UTI in women (#1 = E. coli)
- Catalase negative, novobiocin resistant
“NO StRES”
Streptococcus pneumoniae
S. pneumoniae, lancet-shaped gram +s
- a-hemolytic, encapsulated, IgA protease, optochin sensitive
- Causes MOPS = meningitis, otitis media, pneumonia, sinusitis
- Pneumococcus - rusty colored sputum, sepsis in sickle cell anemia/spenectomy
- If remove capsule, no virulence)
“MOPS are MostOPtochin Sensitive”
Viridans group strep
*Make dextrans from sucrose - help adhere to surfances (tooth caries, heart valves)
S. mutans (carries), S. sanguinis (endocarditis at damaged valves)
- a-hemolytic (partial), no capsule, optochin resistant
- S. sanguinis makes dextrans (bind fibrin-plt aggregates on damaged valves)
- Why we give abx before dental procedures in pts w/ heart valves
Strep pyogenes
Group A strep, B-hemolytic (catalase neg)
- Pyogenic - pharyngitis, cellulitis, impetigo
- Toxigenic - scarlet fever, TS-like syndrome, nec fasciitis
- Immunologic - rheumatic fever (Jones criteria), acute glomerulonephritis
Pharyngitis can cause rheumatic “phever” and glomerulonephritis
- Impetigo - more before glomerulonephritis than pharyngitis
Strep agalactiae
Group B strep, colonizes vagina, B-hemolytic (catalase neg)
- Pneumonia, meningitis, sepsis in Babies
- Makes CAMP which incr hemolysis from s. aureus (Hippurate test +)
- Screen pregnant women at 35-37 wks, if positive tx intrapartum w/ penicillin
“Group B for Babies!”
JONES criteria
Rheumatic fever (from s. pyogenes):
- Joints - polyarthrtis
- <3 - carditis
- Nodules - subcutaneous
- Erythema marginatum
- Sydenham chorea
Scarlet fever
From S. pyogenes:
- Scarlet rash (sandpaper texture)
- Strawberry tongue
- Circumoral pallor
Enterococci
Group D strep (E. faecalis), no hemolysis
- Grows in bile/acidic env (nl in GI/GU)
- VRE = vanc resistant enterococci –> cause nosocomial infection
Strep bovis
Group D strep, colonizes gut
- Bacteremia + acute endocarditis in colon cancer pts
“Bovis in Blood = Cancer in the Colon”
Rods
Bacilli
- Clostridium
- Corynebacterium
- Listeria
- Bacillus
- Mycobacterium
Corynebacterium diptheriae
Causes diptheria - via endotoxin (from B-prophage)
- Endotoxic inhibits protein synthesis (inhibit ADP-ribosylation of EF2)
- Sx: pseudomembranes (gray-white membrane), lymphadenopathy, myocarditis, neuro toxicity (toxin penetrates blood:brain)
- Dx - gram + with metachromatic (blue/red) granules + Elek test for toxin
- Prevention - toxoid vaccine
“ABCDEFG” - ADP ribosylation, B-prophage, Corynebacterium, Diptheriae, EF2, Granules
Bacterial spores
Some bacteria make spores when nutrients limited
- Spores = heat/chemical resistant
- Must autoclave to kill spores (121C for 15min)*
- Dipicolinic acid = core, no metab activity
Causing spores:
- Soil - bacillus anthracis, Clostridium perfringens, C. tetani
- Other: B. cereus, C. botulinum, Coxiella burnetii
Clostridia types
Gram positive, spore-forming, obligate anaerobic bacilli
- C. tetani
- C. botulinum
- C. perfringens
- C. difficile
C. tetani
Exotoxin = tetaniospasmin
- Protease - cleaves release proteins for NTs
- Blocks glycine/GABA release (inhib NTs) from Renshaw cells in spinal cord
- Spastic paralysis, trismus (lockjaw), risus sardonicus (grin)
- Vaccine = inactivated tetanus toxin
C. botulinum
Exotoxin = botulinum toxin –> preformed, heat-labile
- Protease - cleaves release proteins for NTs
- Inhibits ACh release at NMJ
- Adults - eat preformed toxin (canned food, good anaerobic env)
- Babies - eat spores in honey = floppy baby syndrome
C. perfringens
Toxin = a-toxin (lecithinase = phospholipase)
- Causes myonecrosis (gas gangrene) and hemolysis
- Myonecrosis from plt aggregation, adherance molecules, vasoocclusion + necrosis
C. difficile
Toxin A = enterotoxin, binds brush border of gut
Toxin B = cytotoxin - pseudomembranous colitis, diarrhea
- Secondary to abx use (amp/clinda)
- Dx - toxins in stool
- Tx = metranidazole or oral vanc
Anthrax
Bacillus anthracis - spore-forming rod, makes anthrax toxin
- Only bacteria w/ polypeptide capsule (D-glutamate)
Cutaneous anthrax - boil lesions, painless + become necrotis [rarely progresses]
Pulmonary anthrax - Inhalation of spores, flu-like –> fever –> pulm hemorrhage –> mediastinitis –> shock
*Woolsorter’s disease - inhaled from contaminated wool
Bacillus cereus
Food poisoning, spores survive cooked rice
- Emetic type:
- Cereulide = preformed toxin, get w/ rice or pasta, n/v in 1-5 hrs
- Diarrheal type:
- Watery, non-bloody diarrhea + GI pain, 8-18hr
Reheated rice syndrome
Listeria monocytogenesis
Facilitative INTRACELLULAR microbe
- Rocket-tails (actin polym) allow them to move in cytoplasm to cell membrane (avoid Ab); tumbling motility
- *Make LPS (only gram + to do this!)
- *Narrow B-hemolytic, replicate at refrig temp (refrig food)
- Ingesting unpasteurized dairy/deli meat, transplacental or vaginal at birth
- Baby: amnionitis, septicemia, spont abortion, granulomatosis, meningitis
- Immunocompromised - meningitis
- Healthy - mild GI disease
Tx - GI = self-limited
- Ampicillin - empiric meningitis tx (babies, immunocompromised, elderly)
Branching filaments
Both gram positive
- Actinomyces - not acid fast, in normal oral flora, get oral/facial abscesses with draining yellow “sulfur granules”
- A. israelii = actinomyces, yellow sand in israel
- Nocardia - acid fast, in soil, get pulm infections in immunocompromised
- Tx = sulfonamides
Mycobacteria
All are acid-fast organisms
- Mycobacterium TB = TB
- M. kansasii - pulm, TB-like sx (water contaminant of municipal H2O system, not nature)
- M. avium-intracellulare (disseminated non-TB in AIDS) –> ppx = azithromycin
TB
Primary - Ghon focus (mid lung)
- Heal by fibrosis - immunity/hypersensitivity –> tuberculin +
- Progressive lung disease (in HIV, malnutrition) = rare
- Severe bacteremia = miliary TB = death
- Preallergic lymphatic/hematogenous dissemination –> dormant tubercle bacilli in organs –> reactivation later
Secondary TB - reinfected, fibrous caseating granulomas (upper lobes)
- See w/ reactivation of TB of lunds
- Extrapulm TB - CNS (tuberculoma or meningitis), vertebral body (Pott)
PPD reading
- PPD pos if current infection, past exposure or BCG vaccine
- PPD neg if no infection, anergic (steroid, malnutrition, immunocompromised), or sarcoid
- TH1-cell mediated delayed hypersensitivity response
- IFN-gamma release assay has fewer false + (esp BCG vaccine)
TB vs. sarcoidosis
TB = caseating granulomas Sarcoidosis = non-caseating granulomas