Classification Processes Flashcards

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1
Q

3.1.6 Recognise that biological classification can be hierarchical and based on different levels of similarity of physical features, methods of reproduction and molecular sequences.

Describe the classification system for:
a) similarity of physical features

Hence describe the Linean Classfication system.

A

The Linnaean system of classification consists of a hierarchy of groupings, called taxa(singular, taxon). Taxa range from the kingdom to the species (see Figure below). The kingdom is the largest and most inclusive grouping. It is based on similarities in obvious physical traits. Examples are the plant and animal kingdoms. The species is the smallest and most exclusive grouping. It consists of organisms that are similar enough to produce fertile offspring together. Closely related species are grouped together in a genus.

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2
Q

Describe the classification system for:
a) similarity of physical features

What are the eight levels of classification in the Linean Classification system?

A

Domain
Kingdom
Phylum
Class
Order
Family
Genus
Species

Dear King Philip Came Over For Good Soup

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3
Q

Describe the classification system for:
a) similarity of physical features

What are the rules for writing scientific names according to the method of binomial nomenclature?

A

This method, called binomial nomenclature, gives each species a unique, two-word Latin name consisting of the genus name and the species name. The rules for writing scientific names:
Capitilise the first letter of the genus name
Do not capitalise the species name
Both names must be underlined
Example: human = Homo sapiens

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4
Q

why is binomial nomenclature important for biological classification?

A

Binomial Nomenclature is important because it allows people from all over the world to communicate unambiguously about the various plant and animal species. Also, it makes sure that every scientific name is unique.

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5
Q

3.1.7 Describe the classfication system for:
b) methods of reproduction (asexual, sexual - K and r selection)

Describe asexual reproduction.

A

Asexual reproduction is a type of reproduction that does not involve the fusion of gametes or change in the number of chromosomes. The offspring that arise by asexual reproduction from either unicellular or multicellular organisms inherit the full set of genes of their single parent. Asexual reproduction is the primary form of reproduction for single-celled organisms such as archaea and bacteria. It involves mitosis and therefore only produces offsprings that are genetically identical to parents. An example of asexual reproduction is pathenogenesis which is a process of binary fission in amoeba and involves development of unfertilised egg into a new individual.

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6
Q

3.1.7 Describe the classfication system for:
b) methods of reproduction (asexual, sexual - K and r selection)

Describe sexual reproduction.

A

Sexual reproduction is a type of reproduction that involves meiosis, complex life cycle in which a gamete (such as a sperm or egg cell) with a single set of chromosomes (haploid) combines with another to produce a zygote that develops into an organism composed of cells with two sets of chromosomes (diploid). As a result the offsprings are genetically different to the parents and to each other.

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7
Q

3.1.7 Describe the classfication system for:
b) methods of reproduction (asexual, sexual - K and r selection)

What are the characteristics of K-selected species?

A

Low reproductive rate
Late reproductive age
Small number of offsprings
Requires high level of parental care
Late ages of maturity
Large body sizes
Longer life expectancies
Stable population sizes and density dependent (competition and predation)

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8
Q

3.1.7 Describe the classfication system for:
b) methods of reproduction (asexual, sexual - K and r selection)

What are the characteristics of r-selected species?

A

High reproductive rate
Early reproductive age
Large number of offsprings
Low parental care
Early ages of maturity
Small body sizes
Short life expectancies
Variable population size and Density-independent (fires, climactic events)

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9
Q

3.1.7 Describe the classification systems for

c) molecular sequences

Describe molecualr phylogeny or cladistics.

A

Cladistics is an approach to biological classification in which organisms are categorized in groups based on hypotheses of most recent common ancestry. The evidence for hypothesized relationships is typically shared derived characteristics that are not present in more distant groups and ancestors. The evidence is accumalated through DNA sequencing. DNA inherited is passed on from one generation to subsequent generations. DNA acquired mutations at a constant rate in some genes, meaning that a time frame can be used to determine evolutionary relatedness of different organisms. Sequencing a region of DNA can produce a “barcode” which can be compared to barcodes of other organisms. The more similar these barcodes, the more closely related the two organisms are.

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10
Q

Describe the classification system for:
a) similarity of physical features

What are some limitations of the Linean Classification system?

A

The major limitation of the Linnaean classification system is that it is based on physical traits. Physical traits may not necessarily be a sign of relatedness and indeed DNA evidence has forced scientists to reconsider many classifications based on the old system. Microscopic organisms like bacteria, fungus, protozoa, etc were not included either in plant kingdom or in animal kingdom.

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11
Q

3.1.7 Describe the classification systems for

c) molecular sequences

What are some assumptions for molecular phylogeny or cladistics?

A

There are three basic assumptions in cladistics: Any group of organisms are related by descent from a common ancestor. There is a bifurcating (divide into two branches or forks) pattern of cladogenesis. Change in characteristics occurs in lineages over time. Mutations occur at a constant rate over time.

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12
Q

3.1.12 Recognise the need for multiple definitions of a species.

Define species.

A

A group of living organisms consisting of similar individuals capable of exchanging genes or interbreeding. The species is the principal natural taxonomic unit, ranking below a genus and denoted by a Latin binomial.

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13
Q

3.1.12 Recognise the need for multiple definitions of a species.

Define biological species.

A

A group of organisms that can reproduce naturally and produce fertile offsprings.

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14
Q

3.1.12 Recognise the need for multiple definitions of a species.

Define morphological species.

A

A group of organisms with the same anatomical structures such as fossils that are clearly distinguished from other organisms.

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15
Q

3.1.12 Recognise the need for multiple definitions of a species.

Define phylogenetic species.

A

The concept of a species as an irreducible group whose members are descended from a common ancestor and who all possess a combination of certain defining, or derived, traits (determined by genetic analysis).

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16
Q

3.1.12 Recognise the need for multiple definitions of a species.

A

In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. Other ways of defining species include their karyotype, DNA sequence, morphology, behaviour or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined. The multiple definitions of species is needed to determine most likely when the species diverged and evolved compared to when the common ancestor was around.

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17
Q

3.1.13 Identify one example of an interspecific hybrid that does not produce a fertile offspring.

What are interspecific hybrids? Provide examples.

A

These result from interbreeding between members of different species. The offspring display traits and characteristics of both parents, but are often sterile, preventing gene flow between the species. Mules, hinnies, and other normally sterile interspecific hybrids cannot produce viable gametes, because differences in chromosome structure prevent appropriate pairing and segregation during meiosis, meiosis is disrupted, and viable sperm and eggs are not formed. Other examples include Liger (Lion and Tiger) and Zonkey (Zebra and Donkey).

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18
Q

3.1.8 Define the term clade.

A

A clade is a group of organisms that consists of a common ancestor and all its linear descendants.

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19
Q

3.1.9. Recall that common assumptions of cladistics include a common ancestry, bifurcation and physical change.

Recall the three basic assumptions of cladistics.

A

Relationships represented in diagrams are called cladograms are based on data from morphological characteristics and/or molecular sequences. They represent the evolutionary history of organisms in the same taxonomic group.

The three basic assumptions of cladistics are
1.) Groups of orgranisms are related by descent from a common ancestor
2.) The branching pattern is dichotomous (each branch is called bifurcation)
3.) Physical characteristics of lineages changes over time

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20
Q

3.1.10 Interpret cladograms to infer the evolutionary relatedness between groups of organisms.

Describe cladograms.

A

Cladograms are a type of phylogenetic tree that represents the evolutionary relationship between organisms. They are constructed by grouping organisms that share derived traits (traits that are different from the group’s ancestor).

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21
Q

3.1.10 Interpret cladograms to infer the evolutionary relatedness between groups of organisms.

Explain phylogenetic trees.

A

Also represent evolutionary relationships among organisms. Reflect how species and other groups evolved from a series of common ancestors but use similarities in DNA or protien sequence as evidence instead of just physical characteristics. Cladograms show the sequence of divergence whilst phylogenetic trees show the evolutionary history of an organism and the timeline of evolution.

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22
Q

3.1.14 Explain the classification of organisms according to the following interactions: predation, competition, symbiosis and disease.

Explain predation.

A

Predation is the ecological process by which energy is transferred from living animal to living animal based on the behavior of a predator that captures and kills a prey before eating it. Any interaction between two organisms in which one (predator) consumes all or part of another organism (prey). Species A (+) Species B (-)

23
Q

3.1.14 Explain the classification of organisms according to the following interactions: predation, competition, symbiosis and disease.

Explain competition.

A

Any interaction where individuals are competing for space, resources, mates etc.
Interspecific competition: between members of different species
Intraspecific competition: between members of the same species
Species A (-) Species B (-)

24
Q

3.1.14 Explain the classification of organisms according to the following interactions: predation, competition, symbiosis and disease.

Explain disease.

A

Organisms classified based on role in either causing or being affected by disease.
Parasite: organism that live on or in another organism, causing harm
Pathogen: biological agents that causes disease
Host: organisms that is infected by pathogen
Vector: organism that transports pathogen between hosts, without being affected itself

25
Q

3.1.14 Explain the classification of organisms according to the following interactions: predation, competition, symbiosis and disease.

Explain symbiosis.

A

A close, long term interaction between two or more species. It can be obligate (needed for survival) or facultative (advantageous without being necessary).

26
Q

3.1.14 Explain the classification of organisms according to the following interactions: predation, competition, symbiosis and disease.

Differentiate between mutualism, commensalism, and amensalism.

A

Mutualism is a type of symbiotic relationship where all species involved benefit from their interactions. Commensalism a relation between two kinds of organisms in which one obtains food or other benefits from the other without damaging or benefiting it. Amensalism, association between organisms of two different species in which one is inhibited or destroyed and the other is unaffected.

27
Q

3.1.15. Understand that ecosystems are composed of varied habitats (microhabitats to ecoregions).

Define microhabitat.

A

A small area which differs somehow from the surrounding habitat. Its unique conditions may be home to unique species that may not be found in the larger region.

28
Q

3.1.15. Understand that ecosystems are composed of varied habitats (microhabitats to ecoregions).

Define habitat.

A

In ecology, the term habitat summarises the array of resources, physical and biotic factors that are present in an area, such as to support the survival and reproduction of a particular species.

29
Q

3.1.15. Understand that ecosystems are composed of varied habitats (microhabitats to ecoregions).

Define ecosystem.

A

A geographic area where plants, animals and other organisms sucessfully interact together and with the abiotic factors of the environment.

30
Q

3.1.15. Understand that ecosystems are composed of varied habitats (microhabitats to ecoregions).

Define ecoregion.

A

An ecoregion (ecological region) or ecozone (ecological zone) is an ecologically and geographically defined area that is smaller than a bioregion, which in turn is smaller than a biogeographic realm. Ecoregions cover relatively large areas of land or water, and contain characteristic, geographically distinct assemblages of natural communities, environmental conditions and species.

31
Q

3.1.15. Understand that ecosystems are composed of varied habitats (microhabitats to ecoregions).

Define biome.

A

A large community of organisms adapted to a specific climate. The five major biomes are aquatic, grassland, forest, desert, and tundra.

32
Q

3.1.17 Explain how the process of classifying ecosystems is an important step towards effective ecosystem management (consider old growth forests, productive soils and coral reefs).

Explain the process of ecosystem management.

A

Once a system is classifed, ecologists can compare number, type, and distribution of species, and observe changes over time. Ecologists can decide whether to introduce management strategies to conserve the compoistion, structure, function, and services of ecosystem.

33
Q

3.1.17 Explain how the process of classifying ecosystems is an important step towards effective ecosystem management (consider old growth forests, productive soils and coral reefs).

Define functions and services.

A

Functions include primary production, decomposition, and nutrient cycling.
Services include source of food, water, oxygen and climate regulation.

34
Q

3.1.17 Explain how the process of classifying ecosystems is an important step towards effective ecosystem management (consider old growth forests, productive soils and coral reefs).

Old growth forests

A

A stable, free from disturbances but diversely structured forest with mature canoy and multiple vegetation laters, as well as hollows, large logs and gaps in canopies due to fallen trees. They are important because they:
-help maintain functions and services, and biodiversity
-used for foraging, basking, nesting
-good for carbon storage
-have deep litter layer for decomposition (nutrient cyling)
-high aesthetic, cultural, and nature conservation values
-hydrological regimes
They are effectively managed by:
-precribed burning (to prevent bushfires)
-control and removal of weed species
-controlled/selective logging
-conservation and recreational use policies

35
Q

3.1.17 Explain how the process of classifying ecosystems is an important step towards effective ecosystem management (consider old growth forests, productive soils and coral reefs).

Productive soils

A

The greatest soil biodiversity is found in natural ecosystems. High nutrient levels with minerals and decayed organic matter support healthy plant growth. They are important because:
- they contribute to farm productivity and profitability
- promotes health of plants, animals, and humans
- can adjust to and recover from environmental and climate stress
-support plant growth, decomposition and nutrient cycling
- resist erosion
They are effectively managed by:
-reducing overgrazing and minimising erosion
-selecting suitable production crops for soil type and climate
-rotation land use plans to imporve or maintain soil productivity
-select appropriate land preparation methods

36
Q

3.1.17 Explain how the process of classifying ecosystems is an important step towards effective ecosystem management (consider old growth forests, productive soils and coral reefs).

Coral reefs

A

Large underwater structure with very high biodiversity that provides 25% of all known marine species with food, shelter and breeding sites. They are important because they:
-protect coastlines from damaging wave action/storms
-sources of essential nutrients for marine food chains
-supports fishing industries because it acts as nursery for juvenile fish
They are effectively managed by:
-zoning plants to limit human activities
- control and removal of invasive species
- conservation and recreational use policies

37
Q

3.1.17 Explain how the process of classifying ecosystems is an important step towards effective ecosystem management (consider old growth forests, productive soils and coral reefs).

A

The process of classifying an old growth forsest (based on its dominant tree species and specific old-growth characteristics) enbales managers/decision makers to make decisions about its management. Agreement about the classification allows stakeholders to make decisions to serve a wide range of value. Classification of ecosystems helps to support effective management of activities such as prescribed burning. Classification of ecosystems helps to support understanding of their unqiue interactions and therefore the effect of specific human impacts. This can lead to long term resilience.

38
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

Explain ecosystem stratification.

A

Stratification in the field of ecology refers to the vertical layering of a habitat; the arrangement of vegetation in layers. It classifies the layers of vegetaion largely according to the different heights to which their plants grow. E.g. in the forest ecosystem, trees are present at the top level followed by shrubs in the second layer and then grasses at the bottom.

39
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

Explain ecosystem zonation.

A

Zonation is the division of an ecosystem into distinct zones/bands/regions in horizontal layering due to an environment gradient (based on abiotic conditions). For example, the ecological zonation of most coral reefs depends on physical factors, including depth, exposure to waves and currents, and oxygen limitation.

40
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is stratified sampling and when should you use it?

A

Stratified sampling uses different layers within a habitat to analyse patterns in ecosystems. The number of samples in each strata is proportionate to the relative size of each strata. You should use stratified sampling when your sample can be divided into mutually exclusive and exhaustive subgroups that you believe will take on different mean values for the variable that you’re studying

41
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is random sampling and when should you use it?

A

Random sampling is where each member of the population is equally likely to be included. Random sampling is used to select a sample that is unbiased. Within each area, every part of the area must have an equal chance of being chosen. Random sampling with quadrats is used to examine differences between contrasting habitats within an habitat. It is used when the population size is small or the size of the individual samples and their number are relatively small and the area under study is fairly uniform/very large.

42
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is systematic sampling and when should you use it?

A

Systematic sampling incolves being taken at regular intervals across an area. Systematic sampling is used where the study area includes an environmental gradient. A transect is used to sample systematically along the environmental gradient. For example, every 10 meters along a line running from seashore inland across a sand dune system.

43
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is the purpose of sampling a population?

A

Population sampling involves identifying individual numbers in small areas and then extrapolating to estimate population totals. Sampled areas must be chosen randomly to avoid selection bias causing a misrepresentation of the population size. Community ecologists and scientists in general take replicated samples to represent the overall community. For example, If an area contains 40% eucalypt and 60% acacia trees, samples taken to measure lichen population should be taken in each vegetaion type in the same proportion.

44
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is the purpose of sampling distribution and density?

A

The number of individuals living within that specific location determines the population density, or the number of individuals divided by the size of the area. For example, sampling frog habitats in concentruc circles around a pond where frog lays eggs will give data on population size of frogs, density and distribution as distance fron the pond increases.

45
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is the purpose of studying environmental gradients and profiles?

A

An environmental gradient, or climate gradient, is a change in abiotic (non-living) factors through space (or time). Environmental gradients can be related to factors such as altitude, depth, temperature, soil humidity and precipitation. Often times, a multitude of biotic (living) factors are closely related to these gradients; as a result of a change in an environmental gradient, factors such as species abundance, population density may be impacted. For example, as altitude increases up a mountain, oxygen availiability decreases. Stratified sampling will give data on species oxygen tolerances and distribution boundaries.

46
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is the purpose ecological zonation?

A

Zonation identifies areas important for retaining habitat quality and connectivity for multiple species, indirectly aiming at species’ long-term persistence. For example, intertidal zones that fluctuate in water and salinity levels develop distinct zones where microhabitats exist. These zones can be measured and monitored for changes as indicator of change to abiotic factors.

47
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What is the purpose ecological stratification?

A

Vertical stratification is a widespread phenomenon in plant and animal communities in forests and a key factor for structuring their species richness and biodiversity, particularly in tropical forests. As rainforests are divided into vertical starta they can be surveyed for variety of organisms with specific adaptations to unique conditions, from floor to canopy.

48
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

How should sites be selected for sampling?

A

Ecological sampling must take effort to avoid bias and obtain the most accurate representation of the sample area. Therefore sites shoud be selected to obtain accurate data by considering:
-safety
-minimal disturbances to communiy
-sampling target species only
-geographical size of area of interest
-time and resources available

49
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

Describe point survey technique.

A

Individual points chosen (using grid or randomly). Organisms at each point are recorded.
Point surveys provide data on species distribution only.
Advantages include:
Efficient method if time is limited
Good for determining species abundance and community composition
Disadvantages
May miss organisms in low abundance

50
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

Describe quadrat sampling.

A

A frame is used to determine a sample area for vegetation or relatively stationary animals. Can vary in size but commonly 1m x 1m. Can be positioned randomly or at regular intervals along a transect. They are useful if area being sampled is consistent.
Need to consider:
- size of quadrat
- number of samples needed
- where/how they will be placed

Provides data on:
- species abundance only
- % cover
- % frequency
- density (number of individuals sampled)
- SDI, eveness and richness

Advantages include:
- very simple eqipment (easy to use)
- cost effective
- suitable for plants and slow moving organisms

Disadvantages:
- can be physically demanding to count all organisms
- time consuming
- quadrats that are too large, too small or spaced inappropriately often result in errors.
- randomly spaced quadrats that are too small might miss too many individuals, resulting in under-representative estimates of population size

51
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

Describe line transects.

A

Provides a sample area along a straight line marked with paint or string. Commonly 50-100m. Count and record all the species that touch the line. Usually follows an environmental gradient. Useful to investigate chang over a distance. Need to consider:
- length of transect
- number of transects
- where/how they will be placed

Provides data on:
- species distribution only
- species richness only

Advantages:
- low environmental impact
- good for assessing presence/absence of plant species

Disadvantages:
-rare species may be missed
-not useful for highly mobile species
- a line transect tells you what is there, but gives limited information on how much of it is present.

52
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

Describe belt transects.

A

Uses two lines parallel to each other and identifying, counting and recording all species in between two lines. Can place a quadrat at regular intervals to observe changes across the area. Usually follows an environmental gradient. It is used to investigate change over distance.
Need to consider:
-length of transect
- number of transects needed
- where/how they will be placed

Provides data on:
-species distribution
- species abundance
- SDI, eveness, richness

Advantages:
- a belt transect will supply more data than a line transect. It will give data on the abundance of individual species at different points along the line, as well as on their range.

Disadvantages:
- takes a long time to carry out properly
- not useful for highly motile species

53
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation

What are some strategies to minimise bias?

A

Increase sample size: as numbe of sample increases, data becomes more representative of the community
Equipment selection and caliberation: using appropriately sensitive and preice instruments improves accuracy and collection
Random selection tools: random number generators and blind selection removes possibility of unconscious human bias
Counting criteria: having firm and consistent rules for counting organisms in a quadrat

54
Q

3.1.18 Describe the process of straified sampling in terms of
a). purpose
b). site selection
c). choice of ecological surveying techniques
d). minimising bias
e). methods of presentation and analysis

Analysing and presenting data

A

Methods of data presentation depends on purpose
- Tables
- Graphs
- Kite diagrams
- Transect profile diagrams

Methods of data analysis
- SD
- SE
- p-values from t-tests