classification of pathogenic bacteria Flashcards

1
Q

describe the classification of gram-positive bacteria:

A

Aerobic & Anaerobic
Morphology:
Cocci (round) → Chains & Clusters

&

Bacilli (rods) → Small & Large

Chains → Streptococci → Haemolysis classification

Haemolysis: appearance on blood agar

  • alpha - partial lysis
  • beta - complete lysis
  • non - no haemolysis

Clusters → Staphylococci → Coagulase ( + / - ) classification

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2
Q

deescribe staph.aureus:

A

coagulase-positive staphylococci i.e. produces the enzyme coagulase.

commensal organism - nose, axilla, perineum.

MRSA → methicilin-resistant Staph. aureus

MSSA → methicilin sensitive Staph. aureus

PRSA → penicillin-resistant Staph. aureus
(production of penicillinase

Wide range of diseases from boils/abscesses and soft tissue infections to septicaemia and osteomyelitis.

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3
Q

what are the major genus of aerobic gram-positive cocci?

A

Staphylococci (clusters) and Streptococci & Enterococci (chains)

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4
Q

One of the common characteristics of coagulase-negative staphylococci is the formation of biofilms…

A

i.e. when they adhere to a surface and form a community of bacteria, which is very difficult to treat.

Many different species e.g. S. epidermidis, S. haemolyticus, S. saprophyticus, S. lugdunensis.

There may be significant pathogens in the presence of foreign bodies/prostheses or immunocompromised individuals.

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5
Q

describe what s.lugdunensis and s.epidermidis is:

A

S. lugdunensis - a sneaky coagulase-negative staphylococci that behaves like S. aureus in regards to pathogenesis.

S. epidermidis - a coagulase-negative staphylococci that are mainly skin commensals which can be pathogenic in the presence of foreign bodies/prostheses or immunocompromised individuals

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6
Q

what are the haemolytic classifications of streptococci?

A

a-haemolytic (partial haemolysis)
→ turn blood agar green

b-haemolytic (complete haemolysis)
→ turn blood agar clear

Non-haemolytic
→ no difference to blood agar

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7
Q

what are the two important species of a-haemolytic streptococci?

A

1- Streptococcus pneumoniae (pneumococcus)

→ pneumonia, meningitis, septicaemia

2- Viridans Streptococci

→ Many different species

→ Normal oral flora

→ Cause of infective endocarditis (infection of heart valves)

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8
Q

b-haemolytic are further idenitifed by carbohydrate surface antigens, lancefield group A-G, describe groups a,b and d:

A

[1] Group A streptococci
* Streptococcus pyogenes

  • Major pathogen
  • Pharyngitis, cellulitis, necrotising fasciitis (“flesh eating bug”)

[2] Group B streptococci
* Streptococcus agalactiae

  • Neonatal sepsis
  • vertical transmission: mother to child during pregnancy

– Meningitis
– Bacteraemia

  • Genital tract carriage common as a commensal (around 25% women).
  • Also responsible for invasive infections in adults
    (often older and underlying factors e.g. diabetes, liver disease / alcohol abuse, CVD, malignancy).

[3] Group D streptococci
* Now re-classified as Enterococcus spp.
E.g. Enterococcus faecalis, Enterococcus faecium

  • Often non-haemolytic.
  • Found in the gut as a normal commensal.
  • Cause of urinary tract infection (UTI) and infective endocarditis.
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9
Q

what are the 3 gram positive bacilli (Aerobic & Anaerboic)?

A

[1] Clostridiodes/Clostridium difficile

  • “Difficult” to culture.
  • Asymptomatic gut carriage –up to 16% of adults and 66% of babies.
  • Increased risk with antibiotic use → disrupts the normal gut flora.
  • causes diarrhoea, associated with toxin production and potentially fatal.
  • Pseudomembranous colitis.
  • Spread / transmitted via spores.
    (bacteria hibernation - alcohol doesn’t kill it)
  • Detect antigen & toxin in stool sample by ELISA.

[2] Clostridium perfringens

  • Found in soil and normal commensal in human and animal gut/faeces.
  • Can contaminate food and cause gastroenteritis (enterotoxin-producing strains).
  • Infects wounds may cause “gas gangrene”.

[3] Clostridium tetani - less important/common (preventable by vaccine)

  • Toxin product ion by C. tetanicause tetanus.
  • Uncontrolled muscle spasm due to loss of inhibition at neuromuscular junction.
  • Antigenically modified toxin (toxoid) used for immunisation.
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10
Q

what are the terms infection and colonisation?

A

Infection - germs in or on the body and make you sick

Colonization - germs are on the body but do not make you sick

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11
Q

75% of the worst bacteria as prioritized by WHO are Gram negative bacteria

A
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12
Q

describe (Neisseria spp) & (Moraxella spp):

A

[1] e.g. Neisseria meningitidis (meningococcus)

  • Meningitis – inflammation of the meninges and septicaemia (blood poisoning).
  • Diagnosed by taking blood cultures or CSF.
  • Often life threatening (some vaccines are made for some strains)

[2] e.g. Neisseria gonorrhoeae (less relevant)

  • Causes urethritis in men and pelvic inflammatory disease in women.
  • Spread by sexual contact.

[3] Moraxella catarrhalis (less relevant)

  • Causative agent of respiratory tract infections.
  • Especially in those with underlying lung pathology.
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13
Q

what is septicaemia and sepsis?

A

Septicaemia - when bacteria enter the bloodstream, and cause blood poisoning which triggers sepsis.

Sepsis - an overwhelming and life-threatening response to infection that can lead to tissue damage, organ failure and death.

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14
Q

what are coliform?

A

gram negative bacilli organisms

Enterobacteriaceae family

mainly commensals of the human large intestine.

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15
Q

what test is useful in the preliminary test in classifying gram negative bacilli?

A

Lactose fermentation

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16
Q

what is e.coli?

A

gram negative bacilli

colonises humans and animals

can ferment lactose.

Virulence mechanisms (cause disease in a host) → pili, capsule, endotoxin and exotoxins.

160+ serotypes based on O antigen (LPS) on the cell wall

urinary tract infections (UTIs)

17
Q

what is enterotoxogenic and enterohaemorrhagic e.coli?

A

E.coli responsible for the most common cause of traveller’s diarrhoea

→ gets in gut through ingestion of contaminated water with faecal matter

Enterohaemorrhagic E.coli are E.coli responsible for bloody diarrhoea

→ haemolytic uraemic syndrome (HUS) associated with E.coli O157

18
Q

give 2 examples of curved gram negative bacilli?

A

Campylobacter spp.

  • Microaerophilic – likes low O2
  • Source is domestic animals and chickens & Spread via faecal-oral route.
  • Foul smelling → bloody diarrhoea (incubation period 2-5 days).
  • Number 1 cause of bacterial diarrhoea in UK.

Helicobacter pylori

  • Curved rods.
  • Natural habitat is human stomach.
  • Damages mucosa and causes ulcers.
  • Strong risk factor for gastric adenocarcinoma.
19
Q

what are the 2 salmonella spp?

A

Does not ferment lactose.

[1] Salmonella enterica >1500 serotypes.

  • Whole genome sequencing now performed in reference lab.
  • Self-limiting enterocolitis with or without bloody diarrhoea (incubation period 12-48 hrs).
  • Second commonest cause of bacterial diarrhoea in UK.
  • Can be invasive i.e. enters bloodsteam.

[2] Salmonella typhi

  • Cause of typhoid fever.
  • Fever, constipation early stages.
  • Organism can be isolated from blood cultures as well as faeces.
  • Risk during foreign travel but vaccine available.
20
Q

what is haemophilus influenzae?

A

gram negative cocci-bacilli (mixed)

causes respiratory tract infection.

Capsulate form ‘type bl vaccine → no longer major cause of meningitis in children

21
Q

what is pseudomonas spp?

A

gram negative bacilli

  • Water and soil coloniser – drains, sinks, mops & may contaminate medical equipment.
  • Hospital acquired cause of sepsis: e.g. UTI, bacteraemia, pneumonia (rare).
  • Feared respiratory pathogen in cystic fibrosis.
  • Multi-drug resistance mechanisms → limited treatment options.
22
Q

give two examples of anaerobes:

A

polymicrobial infection

[1] Prevotella & Porphyromonas → Oral cavity

periodontal disease

polymicrobial dental abscesses.
- Porphyromonas e.g. P. gingivalis

aspiration pneumonia.

  • Human & animal bite infections.
  • Pasteurella spp & Capnocytophyga spp

[2] Bacteriodes spp. → Gut (most common anaerobes)
e.g. Bacteroides fragilis

normal colonic flora.

causes intra-abdominal abscess.

might spread to other sites via bloodstream.

22
Q

what are miscellaneous bacteria?

A

bacteria that cannot be stained with Gram’s method due to composition of the cell wall.

  • Not all bacteria can be cultured by standard methods.

1– Mycobacterium spp.

2– Spirochaetes.

3– Chlamydia / Chlamydophila.

23
Q

what are acid and alcohol fast bacilli? give an example

A

they’re resistant to decolourisation by acid or alcohol after staining with carbol fuchsin.

e.g. Mycobaterium species
→ stained with Ziehl-Neelsen (ZN) or Auramine

24
Q

What’s the problem with lab identification of Mycobacteria? i.e. using ZN or Auramine screening stain

A

1- Does not identifiy species, only genus

2- Long growth time (2-4 weeks)

Modern methods sped up growth using automated liquid culture

25
Q

what are spirochaetes? give examples:

A

ong, spiral-shaped miscellaneous bacteria.

[1] Treponema pallidum → Syphilis

[2] Borrelia burgdorferi → Lyme disease

It’s very difficult to culture & diagnosed by serology

Special stains;

  • Dark ground microscopy
  • immunofluorescence
25
Q

what is mycobacterium leprae?

A

a miscellaneous bacteria that causes Leprosy.

can’t be cultured

attacks peripheral nerves.

26
Q

what is chlamydia? give

A

opthalmic and genital tract infection

chlamydia trachomatis
- trachoma (tropical eye infection)
- genital and neonatal infection

diagnosis:
nucleid acid amplification test on first boid urine or vulval/ vaginal swabs

most common STI