Chemistry Flashcards
Major analytical methods used in the clinical chemistry laboratory include:
Major analytical methods used in the clinical chemistry laboratory include:
- spectrophotometry
- chemical sensors
- gas chromatography with various detectors
- gas chromatography combined with mass spectrometry
- high-performance liquid chromatography
- liquid chromatography combined with mass spectrometry or tandem mass spectrometry
Detection Method - Various Assays/Analytical Instrument
- Spectrophotometric detection
- Chemical sensors
- Flame ionization detection
- Mass spectrometric detection
Detection Method - Various Assays/Analytical Instrument
- Spectrophotometric detection
- Colorimetric assays
- Atomic absorption
- Enzymatic assays
- Various immunoassays
- High-performance liquid chromatography with ultraviolet (HPLC-UV) or fluorescence detection
- Chemical sensors
- Various ion-selective electrodes and oxygen sensors
- Flame ionization detection
- Gas chromatography
- Mass spectrometric detection
- Gas chromatography/mass spectrometry (GC/MS)
- High-performance liquid chromatography (HPLC)/mass spectrometry (LC/MS)
- Handem mass spectrometry (LC/MS/MS)
- Inductively coupled plasma mass spectrometry (ICP-MS)
Spectrophotometric measurements
- based on __ Law
- __ measured as __ because there is a linear relationship between __ and concentration of the analyte in the solution
- scale of absorbance __ to __, __ = “no absorbance”
- __of light depends on the concentration of the analyte in the solvent and __
Spectrophotometric measurements
- based on Beer’s Law (BeerLambert Law)
- transmittance measured as absorption (“A”) because there is a linear relationship between absorbance and concentration of the analyte in the solution
- scale of absorbance 0 to 2, 0 = “no absorbance”
- Absorption of light depends on the concentration of the analyte in the solvent and length of the cell path
Atomic absorption spectrophotometry
- used for analysis of __
- components of gaseous samples are converted into __ by __ using a graphite chamber that can be heated after application of the sample
- hollow cathode lamp containing __ at a very __ pressure is used as a light source
- __ cathode contains the analyte of interest
- Atoms in the ground state then __ part of the light emitted by the __ to boost them into __
- part of the light beam is __ –> net __ in the intensity of the beam that arrives at the detector
- __ Law to measure concentration of the analyte of interest
- __ correction in flameless to correct for background noise
- __is vaporized at room temperature –> “cold vapor atomic absorption” can be used only for analysis of __
Atomic absorption spectrophotometry
- used for analysis of various elements, including heavy metals
- components of gaseous samples are converted into free atoms by flame or flameless manner using a graphite chamber that can be heated after application of the sample
- hollow cathode lamp containing an inert gas like argon or neon at a very low pressure is used as a light source
- metal cathode contains the analyte of interest
- Atoms in the ground state then absorb a part of the light emitted by the hollow cathode lamp to boost them into the excited state
- part of the light beam is absorbed –> net decrease in the intensity of the beam that arrives at the detector
- Beer’s Law to measure concentration of the analyte of interest
- Zimmerman’s correction in flameless to correct for background noise
- Mercury is vaporized at room temperature –> “cold vapor atomic absorption” can be used only for analysis of mercury
Inductively coupled plasma mass spectrometry (ICP-MS)
- Is it a spectrophotometric method?
- Used for analysis of __, especially __ found in small quantities in __ specimens
Inductively coupled plasma mass spectrometry (ICP-MS)
- not a spectrophotometric method, but is a mass spectrometric method
- used for analysis of elements, especially trace elements found in small quantities in biological specimens
Chemical sensors
- capable of detecting __ present in __ matrix
- those capable of detecting __ are classified under three broad categories:
Chemical sensors
- capable of detecting various chemical species present in biological matrix
- those capable of detecting selective ions are classified under three broad categories:
- ion-selective electrodes
- redox electrodes
- carbon dioxide-sensing electrodes
Gas chromatography
- Used for separation of __
- Compounds identified by __
- __ depends on the flow rate of __ through the column, nature of the column, and __ of analytes
- After separation by GC, compounds can be detected by:
- __, __, __
- __ is the most specific detector for GC
- Drawback:
- only for analysis of __
Gas chromatography
- used for separation of relatively volatile small molecules
- compounds with higher vapor pressures (low boiling points) will elute faster than compounds with lower vapor pressures (high boiling points)
- Compounds identified by the retention time (RT)
- travel time needed to pass through the GC column
- RT depends on the flow rate of gas (helium or an inert gas) through the column, nature of the column, and boiling points of analytes
- After separation by GC, compounds can be detected by:
- flame-ionization detector (FID)
- electron-capture detector (ECD)
- nitrogen-phosphorus detector (NPD)
- Mass spectrometer is the most specific detector for GC
- Drawback:
- only for analysis of relatively volatile compounds or compounds that can be converted into volatile compounds using chemical modification of the structure (derivatization)
High-performance liquid chromatography (HPLC)
- Capable of analyzing __
- Common detectors include: __
- HPLC + __ is a superior technique
- __ ionization is commonly used in liquid chromatography + __ or __
High-performance liquid chromatography (HPLC)
- Capable of analyzing polar and non-polar compounds
- Common detectors include: ultraviolet (UV) detectors, fluorescence detectors, or electrochemical detectors
- HPLC + mass spectrometry is a superior technique
- Electrospray ionization is commonly used in liquid chromatography + mass spectrometry or tandem mass spec (MS/MS)
Immunoassays
- __
- only one antibody is used
- for assays of __ such as __
- __
- two antibodies are used
- for assays of __
Immunoassays
- Competitive immunoassays
- only one antibody is used
- for assays of small molecules such as a therapeutic drugs or drugs of abuse
- Immunometric (non-competitive, aka sandwich)
- two antibodies are used
- for assays of relative large molecules
- Homogenous immunoassay format:
- Heterogenous immunoassay format:
- Homogenous immunoassay format:
- After incubation, no separation between bound and free label is necessary.
- Heterogenous immunoassay format:
- The bound label must be separated from the free label before measuring the signal.
EMIT (enzyme multiplied immunoassay technique)
- __, __ immunoassay, __ molecules (__ Daltons)
- antigen is labeled with __
- enzyme that reduces __ to __
- __ = no signal at __ nm
- __ = absorbs at __ nm
- absorbance is monitored at __ nm
- labeled antigen binds with the antibody molecule –> enzyme label becomes __ and __ signal is generated
- signal intensity is proportional to analyte __
EMIT (enzyme multiplied immunoassay technique)
- homogenous competitive immunoassay, small molecules (<1000 Daltons)
- antigen is labeled with glucose 6-phosphate dehydrogenase
- enzyme that reduces NAD to NADH
- NAD = no signal at 340 nm
- NADH = absorbs at 340 nm
- absorbance is monitored at 340 nm
- labeled antigen binds with the antibody molecule –> enzyme label becomes inactive and no signal is generated
- signal intensity is proportional to analyte concentration
The Cloned Enzyme Donor Immunoassay (CEDIA)
- method is based on __ technology
- bacterial enzyme __ is genetically engineered into two inactive fragments
- when both fragments __, a signal is produced that is proportional to __
The Cloned Enzyme Donor Immunoassay (CEDIA)
- method is based on recombinant DNA technology
- bacterial enzyme beta-galactosidase is genetically engineered into two inactive fragments
- when both fragments combine, a signal is produced that is proportional to the analyte concentration
Kinetic interaction of microparticle in solution (KIMS)
- In the absence of __ molecules free antibodies bind to __ to form particle aggregates
- results in __ in absorption that is __ measured at various visible wavelengths (_-_ nm)
Kinetic interaction of microparticle in solution (KIMS)
- In the absence of antigen molecules free antibodies bind to drug microparticle conjugates to form particle aggregates
- results in an increase in absorption that is optically measured at various visible wavelengths (500-650 nm)
Luminescent oxygen channeling immunoassays (LOCI)
- immunoassay reaction is __with light to generate __ molecules in microbeads (“Sensibead”) coupled to the __
- when bound to the respective antibody molecule, also coupled to another type of bead, it reacts with __
- __ signals are generated, proportional to the concentration of __
Luminescent oxygen channeling immunoassays (LOCI)
- immunoassay reaction is irradiated with light to generate singlet oxygen molecules in microbeads (“Sensibead”) coupled to the analyte
- when bound to the respective antibody molecule, also coupled to another type of bead, it reacts with singlet oxygen
- chemiluminescence signals are generated, proportional to the concentration of the analyte-antibody complex
Bilirubin interference
- total bilirubin concentration > __ mg/dL may cause problems
- interference of bilirubin is mainly caused by its absorbance at __or __ nm
Bilirubin interference
- total bilirubin concentration < 20 mg/dL does not cause interferences
- concentrations > 20 mg/dL may cause problems
- interference of bilirubin is mainly caused by its absorbance at 454 or 461 nm
Heterophilic antibodies
- May arise in a patient with:
- __, __, __
- Interference
- most commonly with __ used for measuring __
- rarely with __ assays
- causing mostly false __results
Heterophilic antibodies
- May arise in a patient with:
- exposure to certain animals or animal products
- infection by bacterial or viral agents
- use of murine monoclonal antibody products in therapy or imaging
- Interference
- most commonly with sandwich assays used for measuring large molecules
- rarely with competitive assays
- causing mostly false positive results
Heterophilic antibodies
- __in urine
- If a __ specimen is positive for an analyte, but it cannot be detected in the __ specimen, it indicates interference from a heterophilic antibody in the __
- Another way to investigate heterophilic antibody interference is __ dilution of a specimen
- if serial dilution produces a __ result, it indicates interference in the assay
- Interference can also be blocked by adding __
Heterophilic antibodies
- Absent in urine
- If a serum specimen is positive for an analyte (e.g. hCG), but beta-hCG cannot be detected in the urine specimen, it indicates interference from a heterophilic antibody in the serum
- Another way to investigate heterophilic antibody interference is serial dilution of a specimen
- if serial dilution produces a non-linear result, it indicates interference in the assay
- Interference can also be blocked by adding commercially available heterophilic antibody blocking agents to the specimen prior to analysis.
Autoantibodies
- interfere with an immunoassay to produce false __results
- __ will conjugate with immunoglobin or other antibodies to generate __, which can falsely __ a result
- example: __ and __ can produce falsely __ results in amylase and prolactin assays
- interference can be removed by __
Autoantibodies
- interfere with an immunoassay to produce false positive results (rarely false negative)
- endogenous analyte of interest will conjugate with immunoglobin or other antibodies to generate macro-analytes, which can falsely elevate a result
- Example: macro-amylasemia and macro-prolactinemia can produce falsely elevated results in amylase and prolactin assays
- interference can be removed by polyethylene glycol precipitation
Prozone (“hook”) effect
- __ levels of antigen can __ the concentrations of “sandwich” (Ab1:antigen:Ab2) complexes responsible for generating the signal by forming mostly __ complexes
- mostly causes __ interference (falsely __ results)
- best way to eliminate the hook effect is __
Prozone (“hook”) effect
- Very high levels of antigen can reduce the concentrations of “sandwich” (Ab1:antigen:Ab2) complexes responsible for generating the signal by forming mostly single Ab:antigen complexes
- negative interference (falsely lower results)
- best way to eliminate the hook effect is serial dilution
Hemoglobin
- 6 Globin Chains?
- Embryonic
- Gower-1 Two __, two __
- Gower-2 Two __, two __
- Portland-1 Two __, two __
- Portland-2 Two __, two __
- Fetal
- Hemoglobin F Two __, two __
- Adult
- Hemoglobin A Two __, two __ (__%)
- Hemoglobin A2 Two __, two __ (
- Hemoglobin F Two __, two __ (
Hemoglobin
- Globin Chains
- alpha chain (α-chain)
- beta chain (β-chain)
- gamma chain (γ-chain)
- delta chain (δ-chain)
- epsilon chain (ε-chain)
- zeta chain (ζ-chain).
- Embryonic
- Gower-1 Two zeta, two epsilon
- Gower-2 Two alpha, two epsilon
- Portland-1 Two zeta, two gamma
- Portland-2 Two zeta, two beta
- Fetal
- Hemoglobin F Two alpha, two gamma
- Adult
- Hemoglobin A Two alpha, two beta (92-95%)
- Hemoglobin A2 Two alpha, two delta (
- Hemoglobin F Two alpha, two gamma (
Newborn babies and infants up to __ old do not depend on HbA synthesis
- switch from Hb F (2__, 2__) to Hb A (2__, 2__) occurs around __
- disorders due to __chain defects manifest clinically after 6 mo
- diseases due to __chain defects are manifested in utero or following birth
Newborn babies and infants up to 6 months old do not depend on HbA synthesis
- switch from Hb F (2alpha, 2gamma) to Hb A (2alpha, 2beta) occurs around 3 mo
- disorders due to beta chain defects (SS) manifest clinically after 6 mo
- diseases due to alpha chain defects are manifested in utero or following birth
Location of Globin Genes
Location of Globin Genes
- Chromosome 16
- alpha chain
- Chromosome 11
- beta chain
- gamma chain
- delta chain
Heme synthesis
- Involves enzymes in both the mitochondrion and cytosol
- In mitochondria __+ __ –> delta-aminolevulinic acid –> cytoplasm –> __ –> coproporphyrinogen III –> mitochondria –> __–> protoporphyrin IX –> heme –> cytosol –> heme combines with __ –> hemoglobin molecule
Heme synthesis
- In mitochondria glycine + succinyl-CoA –> delta-aminolevulinic acid –> cytoplasm –> porphobilinogen –> coproporphyrinogen III –> mitochondria –> protoporphyrinogen III –> protoporphyrin IX –> heme –> cytosol –> heme combines with globulin –> hemoglobin molecule
Heme synthesis
-
mitochondria
- glycine + succinyl-CoA
- delta-aminolevulinic acid
-
cytoplasm
- porphobilinogen
- coproporphyrinogen III
-
mitochondria
- protoporphyrinogen III
- protoporphyrin IX
- heme
-
cytosol
- heme + globulin
- hemoglobin molecule
With enzymes
- In mitochondria glycine + succinyl-CoA –> delta-aminolevulinic acid –> cytoplasm –> converted into porphobilinogen (enzyme: aminolevulinic acid dehydrogenase) –> coproporphyrinogen III (multiple steps & enzymes) –> mitochondria –> protoporphyrinogen III (enzyme: coproporphyrinogen III oxidase) –> protoporphyrin IX (enzyme: protoporphyrinogen III oxidase) –> heme (enzyme: ferrochelatase) –> cytosol –> heme combines with globulin –> hemoglobin molecule
Hemoglobinopathies can be divided into 3 major categories:
Hemoglobinopathies can be divided into 3 major categories:
- Quantitative disorders of hemoglobin synthesis:
- Production of structurally normal globin chains, but in decreased amounts
- thalassemia syndrome
- Qualitative disorders of hemoglobin structure:
- Production of structurally abnormal globulin chains
- hemoglobin S (most common), C, O, or E
- Failure to switch globin chain synthesis after birth:
- Hereditary persistence of fetal hemoglobin (HbF)
- relatively benign condition
- can co-exist with thalassemia or sickle cell disease, result in decreased severity (protective effect)
- Hereditary persistence of fetal hemoglobin (HbF)


























