Chemical Pathology Flashcards
3 most important buffering systems in the body
Bicarbonate (ECF, glomerular filtrate) H + HCO3
Haemoglobin (red cells) H + Hb
Phosphate (renal tubular cells / intracellular) H + HPO4
How are bicarbonate ions regenerated?
Reaction of water and carbon dioxide produces carbonic acid which generates a bicarbonate ion. The bicarbonate ion can then be reabsorbed in the proximal tubule.
NB: The hydrogen ion produced is excreted through a hydrogen/sodium pump (exchanged with sodium).
How to calculate bicarbonate?
[H+] = (k x [CO2]) / [HCO3-]
NB: on a blood gas, bicarbonate is calculated not measured
Causes of metabolic acidosis
- Increased H+ production eg. DKA, lactic acidosis (decreased blood supply)
- Decreased H+ excretion eg. renal tubular acidosis
- Bicarbonate loss eg. intestinal fistula
Causes of respiratory acidosis
Decreased ventilation
Poor lung perfusion
Impaired gas exchange eg. PE, emphysema
(primary abnormality is increased CO2 which drives reaction to left, increasing hydrogen ion concentration)
Causes of metabolic alkalosis
Hydrogen ion loss eg. pyloris stenosis or vomiting
Hypokalaemia (Na/K/H+ pump)
Ingestion of bicarbonate
Causes of respiratory alkalosis
Due to hyperventilation which can be caused by:
Voluntary
Artificial ventilation
Stimulation of respiratory centre (rare drugs)
Compensation for chronic respiratory alkalosis
Kidney excretion of hydrogen ions decreases so hydrogen ion increases. On blood gas:
pH starts to normalise
CO2 and HCO3- remain low
What does deficient enzyme activity lead to?
Lack of end product
Build-up of precursors
Abnormal, often toxic metabolites (high concentrations of precursors causes activation of enzymes that may not usually be active for these substrates in their low concentrations)
IMD Screening Criteria
(Wilson & Junger 1968)
- Important health problem
- Accepted treatment
- Facilities for diagnosis and treatment
- Latent or early symptomatic stage
- Suitable test or examination
- Test should be acceptable to population
- Natural history understood
- Agreed policy on whom to treat as patients
- Economically balanced
- Continuing process
Classical Phenylketonuria (PKU)
Low IQ (<50)
Common 1:5000 to 1:50000
Over 400 gene mutations
Treatment only effective if started within first 6 weeks of life
Sensitivity & Specificity
Sensitivity = proportion of people with true presence of disease (out of everyone who has disease, how many tested positive?)
Specificity = proportion of people with true absence of disease
Positive & Negative predictive Value
PPV = out of everyone who tested positive, how many actually have disease?
NPV = out of everyone who tested negative, how many actually don’t have disease?
Depends on disease prevalence/incidence
UK Screening for IMD
Carried out in first 5-8 days of life
Heel-prick capillary from posterior medial third of foot, blood is spotted onto Guthrie card (thick filter paper)
Bloodspot card sent to specialist lab, bloodspots are punched out, blood sample eluted and phenylalanine measured.
PPV for classic PKU = 80%
UK screening for congenital hypothyroidism
incidence 1:4000
inherited only 15%
usually dysgenesis/agenesis of thyroid gland
not always detected clinically but may have puffy face, skin mottling, large tongue, umbilical hernia, hoarse cry
based on high TSH
PPV 60-70%
treatable with thyroxine
Why was CF added to UK screening programme?
Irrefutable evidence that early intervention improves outcome
Cystic Fibrosis pathology
6 classes of defect
failure of chloride ion movement from inside epithelial cell into lumen leading to increased absorption of sodium and water resulting in viscous secretions and doctule blockage
Manifestations of CF
Lungs: recurrent infection
Pancreas: malabsorption, steatorrhoea, diabetes
Liver: cirrhosis
Neonatal test for CF
high blood immune reactive trypsin (IRT)
if level is above 99.5th (70ng/mL) centile in 3 bloodspots, do DNA mutation detection (panel of 4)
2 mutations = diagnosis of CF
1 mutation -> expand panel to 28, and if another mutation is detected -> diagnosis of CF
0 mutations -> another IRT (>99.9th centile) -> 2nd IRT at 21-28 days
Current UK screening for IMDs
PKU from 1969
Congenital hypothyroidism 1970
Sickle cell disease 2006
CF 2007
Medium chain AcylCoA dehydrogenase deficiency (MCADD) 2009 (fatty acid oxidation disorder)
MCADD
cause of cot death;
in between feeding, baby cannot break down fats, dies of hypoglycaemia
MCADD screening
using acylcarnitine levels by tandem mass spec
incidence 1:10,000
treatable: make sure babies never become hypoglycaemic
Homocystinuria
failure of remethylation of homocysteine
causes: lens dislocation, mental retardation, thromboembolism from an early age
currently screened for in Wales and in trial in UK to decide if it should be added
amino acid disorder
Urea cycle defects
7 enzymes so 7 recorded defects
Also includes 3 conditions: Lysinuric protein intolerance, HHH, Citrullinaemia type II
all autosomal recessive except OTC (X-linked)
Urea cycle begins with ammonia and ends with urea so any defect will result in hyperammonaemia (ammonia is very toxic)
ammonia > 300 micromol/L results in hyperammonaemic coma (1 day in this condition results in very low IQ)
Incidence: 1:30,000