Chapter 7 Exam 3 Flashcards

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1
Q

What are carbohydrates?

A

carbohydrates = aldehydes or ketones with at least two hydroxyl groups, or substances that yield such compounds on hydrolysis

many carbohydrates have the empirical formula (CH2O)n

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2
Q

What are the classes of carbohydrates?

A

monosaccharides = simple sugars, consist of a single polyhydroxy aldehyde or ketone unit
example: D-glucose

disaccharides = oligosaccharides with two monosaccharide units
example: sucrose (D-glucose and D-fructose)

oligosaccharides = short chains of monosaccharide units, or residues, joined by glycosidic bonds.

polysaccharides = sugar polymers with 10+ monosaccharide units
examples: cellulose (linear), glycogen (branched)

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3
Q

How does stereoisomerism work in monosaccharides?

A

backbones of monosaccharides:
-unbranched carbon chains with single bonds linking all carbon atoms
-one of the carbon atoms is double-bonded to an oxygen atom to form a carbonyl group
-other carbon atoms are bonded to a hydroxyl group

Stereoisomers arise because many of the carbon atoms to which the hydroxyl groups are attached are chiral centers

enzymes that act on sugars are stereospecific

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4
Q

What is a aldose?

A

aldose = carbonyl group is at an end of the carbon chain (in an aldehyde group)

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5
Q

What is a ketose?

A

ketose = carbonyl group is at any other position (in a ketone group)

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6
Q

What makes sugar sweet?

A

TAS1R2 and TAS1R3 encode sweet-taste receptors

binding of a compatible molecule generates a “sweet” electrical signal in the brain
requires a steric match

(The amino acids glycine, alanine, and serine are mildly sweet and harmless; nitrobenzene and ethylene glycol have a strong sweet taste but are toxic.
Stevioside, a sugar derivative isolated from the leaves of the stevia plant (Stevia rebaudiana Bertoni), is several hundred times sweeter than an equivalent amount of sucrose.
Small protein brazzein (54 amino acids), isolated from berries of the Oubli vine (Pentadiplandra brazzeana Baillon) in Gabon and Cameroon, is 17,000 times sweeter than sucrose on a molar basis. Presumably, the sweetness of the berries encourages their consumption by animals that then disperse the seeds so that new plants are established.)

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7
Q

What is the asymetric center of monosaccarides?

A

all monosaccharides (except dihydroxyacetone) contain 1+ chiral carbon atom
occur in optically active isomeric forms

enantiomers = two different optical isomers that are mirror images

in general, a molecule with n chiral centers can have 2n stereoisomers

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8
Q

What are fischer projections?

A

used to represent three-dimensional sugar structures on paper
bonds drawn horizontally indicate bonds that project out of the plane of the paper
bonds drawn vertically project behind the plane of the paper

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9
Q

Whats the difference between D-isomers and L-isomers?

A

reference carbon = chiral center most distant from the carbonyl carbon

two groups of stereoisomers:
-D isomers = configuration at reference carbon is the same as D-glyceraldehyde
on the right (dextro) in a projection formula
most hexoses of living organisms
-L isomers = configuration at reference carbon is the same as L-glyceraldehyde
on the left (levo) in a projection formula

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10
Q

How are carbons on sugar numbered?

A

carbons are numbered beginning at the end of the chain near the carbonyl group

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11
Q

What are epimers?

A

epimers = two sugars that differ only in the configuration around one carbon atom

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12
Q

How are monosaccharides have cyclic structure?

A

in aqueous solution, aldotetroses and all monosaccharides with 5+ backbone carbon atoms occur as cyclic structures
covalent bond between the carbonyl group and the oxygen of a hydroxyl group

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13
Q

What are hemiacetals or hemiketals?

A

hemiacetals or hemiketals = derivatives formed by a general reaction between alcohols and aldehydes or ketones
product of the first alcohol molecule addition
a five- or six-membered ring forms if the —OH and carbonyl groups are on the same molecule

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14
Q

What is an acetal or ketal?

A

acetal or ketal = product of the second alcohol molecule addition
forms a glycosidic bond

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15
Q

How are hemiacetals and hemiketals?

A
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16
Q

What are alpha and beta stereoisomeric configurations?

A

reaction with the first alcohol molecule creates an additional chiral center (the carbonyl carbon).
produces either of two stereoisomeric configurations: α and β

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17
Q

What are anomers?

A

anomers = isomeric forms of monosaccharides that differ only in their configuration about the hemiacetal or hemiketal carbon atom
anomeric carbon = the carbonyl carbon atom
reaction between the aldehyde group at C-1 and the hydroxyl group at C-5 forms a hemiacetal linkage
mutarotation = the interconversion of α and β anomers

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18
Q

What is pyranoses?

A

pyranoses = six-membered ring compounds
form when the aldehyde group at C-1 reacts with hydroxyl group at C-5

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19
Q

What are furanoses?

A

furanoses = five-membered ring compounds
form when the hydroxyl group at C-5 reacts with the keto group at C-2

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20
Q

What is a Haworth Perspective formula?

A

Haworth perspective formulas = more accurate representation of cyclic sugar structure than Fischer projections
six-membered ring is tilted to make its plane almost perpendicular to that of the paper
bonds closest to the reader are drawn thicker than those farther away

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21
Q

How do you convert D-hexose fischer to Haworth?

A

step 1: draw the six­-membered ring (five carbons, and one oxygen at the upper right)
step 2: number the carbons in a clockwise direction beginning with the anomeric carbon
step 3: place the hydroxyl groups
hydroxyl groups on the right in a Fischer projection are placed pointing down and those on the left are placed pointing up
step 4: place the terminal —CH2OH group
projects upward for the D enantiomer, downward for the L enantiomer
step 5: place the anomeric hydroxyl group
for a β structure, the hydroxyl group is placed on the same side of the ring as C-­6
for an α structure, it is placed on the opposite side

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22
Q

What should we know about chair conformations?

A

Conformational Formulas of Pyranoses
pyranose rings tend to assume either of two “chair” conformations
interconvertible without breaking covalent bonds
requires energy input

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23
Q

What are aldonic and Uronic acids?

A

aldonic acids = form following oxidation of the carbonyl carbon of aldoses, ex. Gluconic acid

uronic acids = form following oxidation at C-6, ex. Glucuronic acid

both form stable intramolecular esters called lactones

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24
Q

What is a phosphorylated derivative?

A

some sugar intermediates are phosphate esters
example: glucose 6-phosphate

stable at neutral pH and bear a negative charge

functions to trap sugar inside the cell because most cells do not have membrane transporters for phosphorylated sugars

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25
Q

What is a reducing sugar?

A

Sugars That are, or can Form, Aldehydes are Reducing Sugars
Reducing sugars = undergo a characteristic redox reaction where free aldehyde groups react with Cu2+ under alkaline condition
reduction of Cu2+ to Cu+ forms a brick-red precipitate: Benedict’s test
ketoses that can tautomerize to form aldehydes are also reducing sugars
Lactose, Maltose (Reducing Sugar)
Sucrose, Threhalose (Non-reducing sugar)

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26
Q

What are O-Glycosidic Bonds?

A

O-glycosidic bond = covalent linkage joining two monosaccharides
formed when a hydroxyl group of one sugar molecule reacts with the anomeric carbon of the other (acetal formation from hemiacetal)
readily hydrolyzed by acid but resist cleavage by base

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27
Q

What is the reducing end?

A

formation of a glycosidic bond renders a sugar nonreducing

reducing end = the end of a disaccharide or polysaccharide chain with a free anomeric carbon a

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28
Q

How does name reducing oligosaccharides work?

A

step 1: with the nonreducing end on the left, give the configuration (α or β) at the anomeric carbon joining the first unit to the second

step 2: name the nonreducing residue using “furano” or “pyrano”

step 3: indicate in parentheses the two carbon atoms joined by the glycosidic bond, with an arrow connecting the two numbers

step 4: name the second residue and repeat for additional residues

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29
Q

What are the three common disaccharides?

A

lactose is a reducing disaccharide

sucrose and trehalose are nonreducing sugars

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30
Q

What are some symbols and abbreviations for monosaccharides and derivatives?

A
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31
Q

What are homopolysaccharides?

A

homopolysaccharides = contain only a single monomeric sugar species
serve as storage forms and structural elements
Starch, Glycogen, Cellulose

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32
Q

What are heteropolysaccharides?

A

heteropolysaccharides = contain 2+ kinds of monomers
provide extracellular support
Glycosaminoglycans (Dermatan sulfate, Chondroitin sulfate)

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33
Q

Why do polysaccharides not have defined lengths of molecular weights?

A

this distinction between proteins and polysaccharides is a consequence of the mechanisms of assembly

there is no template for polysaccharide synthesis

the program for polysaccharide synthesis is intrinsic to the enzymes that catalyze the polymerization of monomer units

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34
Q

What is starch?

A

Starch (storage polysaccharides in plant cells) = contains two types of glucose polymer, amylose and amylopectin
amylose = long, unbranched chains of D-glucose residues connected by (α1→4) linkages
amylopectin = larger than amylose with (α1→4) linkages between glucose residues and highly branched (every 24 to 30 residues) due to (α1→6) linkages

35
Q

What is glycogen?

A

Glycogen (storage polysaccharides in animal cells) = polymer of (α1→4)-linked glucose subunits, with (α1→6)-linked branches
more extensively branched (every 8 to 12 residues)
more compact than starch

36
Q

What is the structure of starch and glycogen?

A
37
Q

How does glucose storage work?

A

Storage of Glucose as Polymers Avoids High Osmolarity
hepatocytes in the fed state store glycogen equivalent to a glucose concentration of 0.4 M

0.4 M glucose in the cytosol would elevate the osmolarity
the resulting osmotic entry of water might rupture the cell

38
Q

What is cellulose?

A

cellulose = tough, fibrous, water-insoluble substance
linear, unbranched homopolysaccharide, consisting of 10,000 to 15,000 D-glucose units
glucose residues have the β configuration
linked by (β1→4) glycosidic bonds
animals do not have the enzyme to hydrolyze (β1→4) glycosidic bonds

Some Homopolysaccharides Serve Structural Roles

39
Q

What is chitin?

A

chitin = linear homopolysaccharide composed of N-acetylglucosamine residues in (β1→4) linkage
acetylated amino group makes chitin more hydrophobic and water-resistant than cellulose

40
Q

What are steric factors and hydrogen bonds that influence homopolysaccharide folding?

A

three-dimensional structures stabilized by weak interactions within or between molecules
hydrogen bonding is especially important due to the high number of hydroxyl groups in polysaccharides

free rotation about both C—O bonds linking the residues is limited by steric hindrance by substituents

41
Q

Why do disaccharides have different energetic conformations?

A

bulkiness and electronic effects at the anomeric carbon place constraints on φ and ψ

42
Q

What the helical structure of starch and glycogen?

A

most stable three-dimensional structure for the (α1→4)-linked chains of starch and glycogen is tightly coiled helix
six residues/turn

43
Q

What is the structure of cellulose?

A

Linear Structure of Cellulose

most stable conformation is a straight, extended chain
each chair is turned 180° relative to its neighbors

44
Q

What is peptidoglycan?

A

peptidoglycan = rigid component of bacterial cell walls
heteropolymer of alternating (β1→4)-linked N-acetylglucosamine and N-acetylmuramic acid residues
cross-linked by short peptides

45
Q

What is the extracellular matrix (ECM)?

A

Glycosaminoglycans are Heteropolysaccharides of the Extracellular Matrix

extracellular matrix (ECM) = gel-like material in the extracellular space of tissues that holds cells together and provides a porous pathway for nutrient and O2 diffusion
composed of an interlocking meshwork of heteropolysaccharides (ground substance) and fibrous proteins
basement membrane (specialized ECM) also contains heteropolysaccharides

46
Q

What are glycosaminoglycans?

A

glycosaminoglycans = heteropolysaccharides in ECM
linear polymers composed of repeating disaccharide units
one monosaccharide is always either N-acetylglucosamine or N-acetylgalactosamine and the other is usually a uronic acid
unique to animals and bacteria
some contain esterified sulfate groups

47
Q

What are types of glycosaminoglycans?

A

hyaluronan (hyaluronic acid) = alternating residues of D-glucuronic acid and N-acetylglucosamine
chondroitin sulfate, dermatan sulfate, keratan sulfate, and heparan sulfate differ from hyaluronan in three respects:
generally much shorter polymers
covalently linked to specific proteins (proteoglycans)
one or both monomer units differ from hyaluronan
provide viscosity, adhesiveness, and tensile strength to the extracellular matrix

48
Q

What is heparan sulfate?

A

Heparan Sulfate: contains variable, nonrandom arrangements of sulfated and non-sulfated sugars
sulfated residues gives the molecule the ability to interact specifically with proteins

49
Q

What is heparin?

A

Heparin: highly sulfated, intracellular form of heparan sulfate produced primarily by mast cells
used as a therapeutic agent to inhibit coagulation of blood through its capacity to bind the protease inhibitor antithrombin

50
Q

What is glycoconjugate?

A

glycoconjugate = biologically active molecule consisting of an informational carbohydrate joined to a protein or lipid
Almost every eukaryotic cell, specific oligosaccharide chains attached to components of the plasma membrane form a carbohydrate layer (the glycocalyx),
several nanometers thick, that serves as an information-rich surface that the cell shows to its surroundings.

51
Q

What are proteoglycans?

A

proteoglycans = macromolecules of the cell surface or ECM consisting of 1+ sulfated glycosaminoglycan chain(s) joined covalently to a membrane protein or secreted protein
major component of all extracellular matrices
Glycosaminoglycan + protein

proteoglycan unit = “core protein” with covalently attached glycosaminoglycan(s)
tetrasaccharide linker connects to glycosaminoglycan to a Ser residue of the protein

52
Q

What are glycoproteins?

A

glycoproteins = have one or several oligosaccharides joined covalently to a protein
found on the outer face of the plasma membrane, in ECM, in blood, and in organelles (Golgi complexes, secretory granules, and lysosomes)
oligosaccharide portions are heterogenous and rich in information
Protein + Saccharide

53
Q

What are glycolipids?

A

glycolipids = plasma membrane components in which the hydrophilic head groups are oligosaccharides

54
Q

What are glycosphingolipids?

A

glycosphingolipids = class of glycolipids with specific backbone structure
neurons are rich in glycosphingolipids
play a role in signal transduction
Ceramide + Saccharide

55
Q

What are syndecans?

A

syndecans = single transmembrane domain and an extracellular domain bearing 3–5 chains of heparan sulfate and chondroitin sulfate

56
Q

What are glypicans?

A

glypicans = attached to the membrane by a GPI anchor (a glycosylated derivative of the membrane lipid phosphatidylinositol)

57
Q

Two Families of Membrane Heparan Sulfate Proteoglycans

A

NA= N-aceylated
Both syndecans and glypicans can be shed into the extracellular space. A protease in the ECM that cuts proteins close to the membrane surface releases syndecan ectodomains (domains outside the plasma membrane), and a phospholipase that breaks the connection to the GPI anchor releases glypicans. These mechanisms provide a way for a cell to change its surface features quickly.

58
Q

What are NS (N-sulfo) Domains?

A

NS domains are highly sulfated domains that alternate with domains having unmodified GlcNAc and GlcA residues (NA domain)

the same core protein can display different heparan sulfate structures when synthesized in different cell types

59
Q

What are the Four Types of Protein Interactions with NS Domains of Heparan Sulfate?

A
60
Q

How does Heparan Sulfate Enhancement of the Binding of Thrombin to Antithrombin?

A

antithrombin binds to and inhibits the protease thrombin only in the presence of heparan sulfate
the binding affinity of thrombin for antithrombin increases 2,000-fold, in the presence of Heparin/Heparan sulfate
both proteins are rich in Arg and Lys residues
interact electrostatically with the sulfates of the glycosaminoglycans

61
Q

What are Proteoglycan Aggregates?

A

proteoglycan aggregates = supramolecular assemblies of many core proteins all bound to a single molecule of hyaluronan

aggrecan interacts strongly with collagen in the ECM of cartilage

Hyaluronan (hyaluronic acid) is ahigh-molecular-mass polysaccharidefound in the extracellular matrix, especially of soft connective tissues. … Hyaluronan production increases in proliferating cells and the polymer may play a role in mitosis.

62
Q

What is fibronectin?

A

fibronectin = has separate domains to bind fibrin, heparan sulfate, and collagen
contain the conserved RGD sequence (Arg–Gly–Asp) to bind integrins

63
Q

What are integrins?

A

integrins = mediate signaling between cell interior and ECM molecules

Fibronectin and a number of other proteins in the extracellular matrix contain the conserved RGD sequence (Arg–Gly–Asp), through which they bind to a family of proteins called integrins.
Integrins mediate signaling between the cell interior and the network of molecules in the ECM.

64
Q

What is the Purpose of Interactions between Cells and the ECM?

A

interactions between cells and the ECM:
anchor cells to the ECM, providing the strength and elasticity of skin and joints
provide paths that direct the migration of cells in developing tissue
convey information in both directions across the plasma membrane

65
Q

What are the two types of glycoprotein attachments? (Glycoproteins Have Covalently Attached Oligosaccharides)

A

two types of attachments:
O-linked = a glycoside bond joins the anomeric carbon of a carbohydrate to the —OH of a Ser or Thr residue (or Tyr)
N-linked = an N-glycosyl bond joins the anomeric carbon of a sugar to the amide nitrogen of an Asn residue
About half of all proteins of mammals are glycosylated.

66
Q

What are examples of glycoproteins?

A

mucins = secreted or membrane glycoproteins
contain large numbers of O-linked oligosaccharide chains
present in most secretions
gives mucus its characteristic slipperiness

proteins of the blood
examples: immunoglobulins (antibodies), follicle-stimulating hormone, luteinizing hormone, and thyroid-stimulating hormone

milk proteins
example: major whey protein α-lactalbumin

67
Q

What is the Biological Advantages of Adding Oligosaccharides to Proteins?

A

covalently attached oligosaccharides:
influence the folding and stability of the proteins
provide critical information about the targeting of newly synthesized proteins
allow specific recognition by other proteins
(at least 40 different genetic disorders of glycosylation having been found in humans, all causing severely defective physical or mental development; some of these disorders are fatal.)

68
Q

What are gangliosides?

A

gangliosides = membrane lipids of eukaryotic cells in which the polar head group is a complex oligosaccharide containing a sialic acid and other monosaccharide residues

69
Q

What are lipopolysaccharides?

A

lipopolysaccharides = dominant surface feature of the outer membrane of gram-negative bacteria

70
Q

What are Glycomics?

A

glycomics = the systematic characterization of all carbohydrate components of a given cell or tissue, including those attached to proteins and to lipids.

Current methods of characterizing the entire carbohydrate complement of cells depend heavily on sophisticated application of nuclear magnetic resonance and mass spectrometry.

71
Q

What is glycobiology?

A

glycobiology = the study of the structure and function of glycoconjugates

the challenge is to understand how cells use specific oligosaccharides to encode information about:
intracellular targeting of proteins
cell-cell interactions
cell differentiation and tissue development
extracellular signals

72
Q

What should we know Oligosaccharide Structures are Information-Dense?

A

branched structures, not found in nucleic acids or proteins, are common in oligosaccharides

almost limitless variety of oligosaccharides due to differences in:
stereochemistry and position of glycosidic bonds
type and orientation of substituent groups
the number and type of branches

73
Q

What are lectins?

A

lectins = bind carbohydrates with high specificity and with moderate to high affinity

functions:
cell-cell recognition
signaling
adhesion
intracellular targeting of newly synthesized proteins

Lectins Are Proteins That Read the Sugar Code and Mediate Many Biological Processes

74
Q

What are selectins?

A

selectins = family of plasma membrane lectins that mediate cell-cell recognition and adhesion in a wide range of cellular processes
move immune cells through the capillary wall
mediate inflammatory responses in rheumatoid arthritis, asthma, psoriasis, multiple sclerosis
mediate the rejection of transplanted organs
thus there is great interest in developing drugs that inhibit selectin-mediated cell adhesion.

75
Q

What is the Role of Lectin-Ligand Interactions in Leukocyte Movement?

A

Two other selectins participate in this “lymphocyte homing”: E-selectin on the endothelial cell and l-selectin on the leukocyte bind their cognate oligosaccharides on the leukocyte and endothelial cell, respectively.

76
Q

What is the binding site for Neuraminidase?

A

The lectin of the influenza virus, known as the HA (hemagglutinin) protein, is essential for viral entry and infection. After the virus has entered a host cell and has been replicated, the newly synthesized viral particles bud out of the cell, wrapped in a portion of its plasma membrane. A viral sialidase (neuraminidase) trims the terminal sialic acid residue from the host cell’s oligosaccharides, releasing the viral particles from their interaction with the cell and preventing their aggregation with one another. Another round of infection can now begin. The antiviral drugs oseltamivir (Tamiflu) and zanamivir (Relenza) are used clinically in the treatment of influenza. These drugs are sugar analogs; they inhibit the viral sialidase by competing with the host cell’s oligosaccharides for binding (Fig. 7-30). This prevents the release of viruses from the infected cell by sialidase, and also causes viral particles to aggregate, both of which block another cycle of infection.

77
Q

Lectin-Carbohydrate Interactions are Highly Specific and Often Multivalent

A

subtle molecular complementarity allows interaction only with the lectin’s correct carbohydrate binding partners

78
Q

What is Lectin Multivalency?

A

lectin multivalency = single lectin molecule has multiple carbohydrate binding domains (CBDs)
increases effective affinity

The affinity between an oligosaccharide and an individual carbohydrate binding domain (CBD) of a lectin is sometimes modest (micromolar to millimolar values), but the effective affinity is often greatly increased by lectin multivalency, in which a single lectin molecule has multiple CBDs. In a cluster of oligosaccharides — as is commonly found on a membrane surface, for example — each oligosaccharide can engage one of the lectin’s CBDs, strengthening the interaction. When cells express multiple lectin receptors, the avidity of the interaction can be very high, enabling highly cooperative events such as cell attachment and rolling

79
Q

How do Interactions of Sugar Residues Due to the Hydrophobic Effect?

A

many sugars have a more polar side and a less polar side
the more polar side hydrogen-bonds with the lectin,
while the less polar side undergoes interactions with nonpolar amino acid residues through the hydrophobic effect.
The sum of all these interactions produces high-affinity binding and high specificity of lectins for their carbohydrate ligands.
(Sugar units such as galactose have a more polar side (the top of the chair as shown here, with the ring oxygen and several hydroxyls), available to hydrogen-bond with the lectin, and a less polar side that can interact with nonpolar side chains in the protein, such as the indole ring of Trp residues, through the hydrophobic effect)

80
Q

Biological Interactions Mediated by the Sugar Code

A

Role of oligosaccharides in recognition events at the cell surface and in the endomembrane system

81
Q

What are some Methods of Carbohydrate Analysis?

A
82
Q

How do you Determining Oligosaccharide and Polysaccharide Structures?

A

more complex than protein and nucleic acid analysis

can employ a variety of methods to determine sequence, configuration at anomeric and other carbons, and positions of glycosidic bonds:
traditional chemical and enzymatic approaches
mass spectrometry
high-resolution NMR spectroscopy

83
Q

What is Solid-Phase Synthetic Methods?

A

carbohydrate chemists can synthesize short segments of almost any glycosaminoglycan

solid-phase oligosaccharide synthesis:
based on the same principles as peptide synthesis
yields defined oligosaccharides
useful in exploring lectin-oligosaccharide interactions