Chapter 6 Flashcards

1
Q

bacteriophage

A
  • also called phage
  • virus the infect bacteria
  • bacteriophage lambda- dsDNA virus
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2
Q

virus

A
  • a noncellular particle that must infect a host cell to reproduce
  • It genetically subverts the cell’s machinery and directs it to produce viral particles
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3
Q

virion

A
  • virus particle
  • consists of nucleic acid (DNA or RNA) contained within a protective protein capsid
  • genomes are usually less than a dozen genes.
  • must coevolve with their hosts
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4
Q

host range

A
  • Different viruses infect every group of organisms
  • Each species of virus infects a particular group of host species
  • range is usually very narrow because its genome must be very compatible with the host cell
  • even specific for particular tissues or cell types
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5
Q

capsid

A
  • is composed of repeated protein subunits that self assemble
  • packages the viral genome, protects it, and delivers it into the host cell
  • Different viruses make different capsid forms
  • can be divided into symmetrical and asymmetrical types
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6
Q

Icosahedral viruses

A
  • Symmetrical Viruses
  • polyhedral with 20 identical triangular faces
  • Exhibits rotational symmetry
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7
Q

Filamentous viruses

A
  • Symmetrical Viruses
  • helical symmetry- capsid monomers self assemble into a helical tube around the genome
  • The capsid consists of a long tube of protein, with the genome coiled inside
  • Vary in length, depending on genome size
  • Include bacteriophages as well as animal and plant viruses
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8
Q

envelope

A
  • encloses the capsid in some viruses
  • contains glycoprotein spikes, which are encoded by the virus and allow it to recognize and infect host cells
  • Common for animal viruses, rare for bacteriophage
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9
Q

Asymmetrical Viruses

A
  • complex multipart structures
  • T4 bacteriophages
  • Have an icosahedral head, helical neck, and tail fibers
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10
Q

Viral genomes can be

A
  • DNA or RNA
  • Single- or double-stranded (ss or ds)
  • Linear or circular
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11
Q

Viral genes encoding viral proteins

A
  • Capsid proteins
  • Envelope proteins (if need be)
  • Required nucleic acid polymerase not found in host cell
  • Enzymes for cell lysis or virus release
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12
Q

Proteomic classification

A
  • compares protein amino acid sequences predicted from genome
  • Statistical analysis reveals common descent of viruses with shared infected hosts
  • Viruses do not have their own separate position on the tree of life
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13
Q

needs for host infection

A
  • Host recognition and attachment
  • Genome entry
  • Genome expression and replication
  • Assembly of virions
  • Exit and transmission
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14
Q

cell-surface receptors

A
  • how host recognition and attachment are mediated
  • Host proteins that are specific to the host species and which are recognized by and bind to a specific viral component.
  • Bacterial receptors are normally used for important functions for the host cell
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15
Q

Phage Reproduction within Host Cells

A
  • Most bacteriophages inject only their genome into a cell through the cell envelope.
  • The phage capsid remains outside, attached to the cell surface.
  • It is termed a “ghost.”
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16
Q

Lytic cycle

A
  • Bacteriophage quickly replicates, killing host cell

- events that threaten host cell survival trigger this cycle

17
Q

Lysogenic cycle

A
  • Bacteriophage infects but becomes quiescent.
  • Genome integrates into the cell’s chromosome, as a prophage
  • Can reactivate to become lytic
18
Q

lysogenic conversion

A
  • Prophage genes can be expressed and change host phenotype

- viral gene that encodes cholera toxin in Vibrio cholera give cholera phenotype

19
Q

Exit from cell- Lysis

A
  • Phage-encoded enzyme breaks down cell wall
  • must be made at the correct time after infection
  • Host cell bursts to release progeny phage
20
Q

Exit from cell- Slow release

A
  • Filamentous phages can extrude individual progeny through cell envelope
  • Host cells do not die but grow slowly because of the metabolic burden of making virus particles
21
Q

Bacterial Host Defenses- Genetic resistance

A

Altered receptor proteins

22
Q

Bacterial Host Defenses-Restriction endonucleases

A

Cleave viral DNA lacking protective methylation

23
Q

Bacterial Host Defenses- CRISPR-CAS

A
  • based on integration of short phage DNA sequences as a type of memory of previous (unsuccessful) attack
  • Clustered regularly interspaced short palindromic repeats
  • Cas protein complex degrades targeted viral DNA
  • A bacterial immune system of sorts
24
Q

Culturing Viruses

A
  • requires growth in host cells

- cultured either in batch culture (in liquid) or as isolated plaques on a bacterial lawn (on a plate)

25
Q

one-step growth curve and the three periods

A

-generated by batch culture of most bacterial viruses

  1. eclipse period- resembles lag phase
  2. rise period- resembles log phase
  3. cell lysis complete and cells burst open
26
Q

Burst size

A
  • the number of phages produced by a single infected cell