Chapter 5 (Macromolecules) Flashcards
Are macromolecules the same as cells?
No, macromolecules are in cells
What do organic compounds consist of?
H hydrogen covalently bounded to C carbon atoms
What do organic compounds form?
Linear and ring-shaped backbones
What are the other common elements in organic compounds?
CHNOPSN - nitrogenO - oxygenP - phosphorusS - sulfur
What are O, N, P, S linked to?
Carbon backbone of cellular organic compounds
What is CO2 considered as?
inorganic (not an organic carbon compound)
What dofunctional groups attached to the carbon backbone pass on?
Diverse properties to organic compounds that are the characteristics of life
What can only living cells assemble?
Large organic compounds called macromolecules and polymers
What are polymers?
large molecules made of monomers
List the 4 carbon compound groups (contain carbon as fundamental element):
4 macromolecules1. Complex carbohydrates2. Lipids3. Proteins4. Nucleic acids
What is metabolism?
Chemical reactions that occur in the cell
Describe metabolism
Transformation of substances into energy or materials
What are the 2 types of metabolism?
AnabolismCatabolism
What is anabolism?
A synthesis (building) rxn
Describe the process of anabolism
Linkage of monomers to form polymers by dehydration synthesis, and water is produced/released
Which process is this? [Image]
Anabolism
True or False: Anabolism requires input of energy
True, because building requires energy
True or False: Catabolism requires input of energy
False, because breaking “releases energy”
What is catabolism?
breakdown rxn
Describe catabolism:
Macromolecules are broken down/digested to their respective monomers by hydrolysis, water is used as a reactant/added
What are organic compounds?
Compounds that contain carbon and are found in living organisms.
Which process of metabolism is this? [Image]
Catabolism
Give me an example of catabolic rxn
Digestion - hydrolysis of food and hydrolysis of macromolecules by lysosome in white blood cells
Does cellular respiration involve hydrolysis reactions?
No, it is an overall catabolic process but doesn’t involve hydrolysis
Flow chart of the hydrolysis of macromolecules in diet
[Image]
What is the most abundant macromolecule?
Carbohbydrates
What is the general composition of carbohydrates?
CHO (N in chitin)
What are thetypes of carbohydrates? (3)
- monosaccharides (sugars)- disaccharides- polyssaccharides
What is the composition of monosaccharides (sugars)?
(CH2O)n- n for number of carbon (C)
What are the monomers of carbohydrates?
monosaccharides
Give me examples of monosaccharides (4)
- glucose- fructose- glucosamine- galactose
How many carbons does glucose have?
6
What is the linear and ringform of glucose?
[Image] [Image]
Are disaccharides considered polymer?
NO
What are disaccharides made of?
2 sugars (monosaccharides)
Function of disaccharides
Store energy
Examples of disaccharides: (3)
- maltose (beer)- sucrose (table sugar)- lactose (milk)
Synthesis of maltose
bonding of two glucose - carbon 1 and carbon 4 links [Image]
Synthesis of sucrose
Glucose + fructose (fructose 5 sidedring) [Image]
Which type of carbohydrate is considered the only true polymer?
Complex carbohydrates or polysaccharides
How are polysaccharides made?
dehydration synthesis of multiple monomers
What are the functions of polysaccharides? (2)
- storage of energy- structural role in the cell
What type of glucose is used for energy and chemical storage?
alpha-glucose
What are the polysaccharides used for energy storage? (2)
- glycogen (animals, stored in liver cells)- starch (plants, stores in chloroplasts)
What type of glucose is used for structural support?
beta-glucose
What polysaccharides provides structural support in plant cell walls?
Cellulose
What structural carbohydrate is found in the cell walls of fungi?
Chitin (CHON)
What is chitin?
chain of glucosamine
What is the main monomer of polysaccharides?
Glucose
What is the structure of alpha-glucose?
H on top in the first carbon [Image]
What is the structure of beta-glucose?
H on the bottom of the first carbon [Image]
What type of glucose are starch and glycogen (storage) made of? What is the structure of starch?
- alpha-glucose- OH on the aligned on the bottom [Image]
What type of glucose are cellulose made of? What is the structure of cellulose?
- beta-glucose- alternating OH positions [Image]
Which group of macromolecule isn’t a true polymer? Why?
Lipids, but due to their size they are considered macromolecules. They don’t have a single repeating monomer, that have more than one type of subunit!
What is the characteristic of lipids?
Heterogeneous, hydrophobic (water fearing, insoluble in water)
What is the general composition of lipids?
CHO (N and P in phospholipids)
What are the two main functions of lipids?
- Energy storage2. Structural
What is the main lipid used for energy storage?
Triacylglycerides (triglycerides) ➡️ fat made of 3 fatty acids and one glycerol
What are the two types of energy-storing lipids, and where are they found?
• Fats – Found in animals, used for insulation and protection.• Oils – Found in plants.
What type of lipid is the main structural component of cell membranes?
Phospholipds
What is a characteristic of phospholipids?
They are amphipatic
Why are phospholipids amphipatic?
They have two parts:• Hydrophilic (water-loving) heads• Hydrophobic (water-fearing) tails
Which type of lipid consists of four fused carbon rings?
Steroid
What are the types of steroid lipids? (2)
- cholesterol- steroid hormones
What is the function of cholesterol in the body? (3)
• Structural component of cell membranes• Precursor for steroid hormones (base for forming)• Component of bile salts (aiding in fat digestion) [Image]
What is the function of steroid hormones?
Regulate metabolism and reproduction, etc
What lipid-based molecules act as cofactors required for absorbing light?
Retinal and carotenoids
What does this represent? [Image]
Fat molecule (triglyceride) by dehydration synthesis that combines 1 glycerol and 3 fatty acids w/ Easter linkages (covalent bond that forms between a hydroxyl (-OH) group and a carboxyl (-COOH) group)
Identifysaturated and unsaturated fat: [Image]
Left: saturatedRight: unsaturated
What is the main structural difference between saturated and unsaturated fatty acids?
• Saturated: No C=C (double) bonds.• Unsaturated: 1 or more C=C (double) bonds.
What is the shape of saturated vs. unsaturated fatty acids?
• Saturated: Linear.• Unsaturated: Bent/Kinked due to double bonds.
How do saturated and unsaturated fatty acids behave at room temperature?
• Saturated: Solid at room temperature.• Unsaturated: Liquid at room temperature.
What are the typical sources of saturated vs. unsaturated fatty acids?
• Saturated: animal fats & butter (mostly).• Unsaturated: vegetable oils.
Whatare the main components of phospholipids?
- Hydrophilic head (contains phosphate group).2. Hydrophobic tails (fatty acid chains).3. Glycerol backbone(Holds everything tgt)
Where are phospholipids found in?
cell membrane in all cells
What structure do phospholipids form in cell membrane?
Bilayer - 2 rows parallel to each other with hydrophilic head facing water and hydrophobic tail meeting inside
Is there water inside the cell membrane?
No, the hydrophobic tails creates a barrier between the inside and outside of the cell
What is a micelle?
circular structure made of phospholipids hydrophilic head outward and hydrophobic tails inward
What is the difference between the cell membrane and the cell wall?
• Cell membrane: all cells (phospholipid bilayer)•Cell wall: in plants & fungi (structural support)
Is cholesterol considered a hormone?
No, its an exception from all steroids
What are the most diverse macromolecules (w/ diverse functions)?
Proteins - polypeptides
Composition of proteins
CHNOS (only ones with sulfur!)
Monomers of proteins - polypeptides
20 different amino acids (aa)
What does each aa have?
A side chain that gives it unique properties and affects the protein’s function [Image]
Synonym of side chains
R group
What are the bonds between aa called?
peptide bond
What are peptide bonds?
N-C bond (protein)
Carboxyl and amino group components
Carboxyl: COOHAmino: NH2Picture of amino acid [Image]
What is infinite?
number of different proteins
What does the number of proteins depend on? (3)
N: number of aaC: composition of aaS: sequence of aa
SPF?
different sequence ➡️ different proteins ➡️ different functions
How is the shape of a protein obtained?
folding of aa sequence into secondary, tertiary and quaternary structures
Which structure of aa sequence is this? [Image]
Primary structure
What’s the orientation of proteins?
N ➡️ C
Which aa sequencestructure is this? [Image]
Secondary
Which structure of aa sequence is this? [Image]
Tertiary - some proteins may contain only alpha helices, only beta sheets, or a mix of both.
Which structure of aa sequence does this represent? [Image]
Quaternary - 2 or more polypeptides (proteins)
Are the 4 structures a cycle?
NO! Each level builds on the previous one but does not loop back.• Primary → Secondary → Tertiary → Quaternary (if applicable).• Once a protein reaches its functional form, it usually stays that way unless it is denatured (unfolded due to heat, pH, or chemicals).
At which structure is the protein considered functional?
At the tertiary (if single polypeptide, e.g. myoglobin) or quaternary (multiple polypeptides, e.g. hemoglobin)- at these structure the protein is finished in 3D form!
Primary structure: (2)
- aa sequence form N (amino) to C (Carboxyl) terminus- peptide bonds
Secondary structures: (2)
- alpha-helices and beta-strands- held tgt by H-bonds between CO (Carboxyl) and NH (amino) of backbone [Image]
Tertiary structure: (2)
- 3D shape- held by interactions between R groups of aa (including S-S bonds)
What are SS bonds? Which structures?
- Strong Shape bonds- tertiary and quaternary structure
Do hydrogen bonds form between alpha helices and beta sheets?
No! H-bonds form within alpha helices and between beta strands, not between the two structures.
Quaternary structure: (2)
- complex of 2 or + polypeptides- also held by interactions between R groups of aa
List the 8 functions of protein:
ESSTHRCDE: EnzymesS: StructuralS: StorageT: TransportH: HormonesR: ReceptorsC: Contractile and motileD: Defensive
What do functions of proteins depend on?
on the shape and shape➡️ aa sequence
What do names of enzymes end with?
ase
What do enzymes do?
Increases the rate of rxn
Give me example of enzymes (2)
- cellulase (break down the cellulose molecule) in green- lipase (break down fat in your diet) in rainbow [Image] [Image]
What do enzymes with structural function do?
strengthen and support tissues and cells
Give me examples of structural proteins (2)
- collagen (building of joint cartilage)- keratin (helps form hair, nails and your skin’s outer layer) [Image] [Image]
What do storage enzyme do?
nourish embryo [Image]
Give me an example of storage protein:
ovalbumin (protein of egg white - liquid)
What do transport enzymes do? (2)
- transport gases and minerals in blood- transport across membranes of cells
Give me the name of the proteinthat transports gases and minerals in blood
hemoglobin (red blood cells) [Image]
Give me the names of the membrane associated proteinsthat transport molecules across cell membranes (3)
- Pumps- Channels- Transporters
What do hormonal enzymes do?
maintain homeostasis
Name a hormonal enzymes:
insulin
What do receptor enzymes do?
Sense and transduce (to pass a message inside the cell) environmental signals
Name a receptor enzymes:
SynapseTrick! Sense ➡️ synapse
What do contractile and motile enzymes do?
muscle contraction and cell movement
name contractile and motile enzymes (2):
Actin and myosin(TRICK: Action and movement)
What do defensive enzymes do?
fight diseases and foreign molecules
Give me example of defensive enzymes:
Antibodies - immunoglobulins (immuno ➡️ Immune system)
Which macromolecule contains information?
Nucleic acids
Composition of nucleic acids:
CHNOPS
What are the monomers of nucleic acids?
nucleotides
What are the bond between nucleotides called?
phosphodiester
What are the two forms of nucleic acids?
- DNA- RNA
DNA = ?
deoxyribonucleic acids
What are DNA made of?
4 different deoxyribonulceotides ➡️ Monomer of DNA
Function of DNA?
Storage of genetic information
RNA = ?
ribonucleic acids
What are RNA made of?
4 different ribonucleotides ➡️ Monomer of RNA
What is the function of RNA?
protein synthesis (making, creating proteins)
Give me an example of a nucleotide that has a central role in metabolism as energy carriers
ATP ➡️ adenosine triphosphate
Difference in overall structure of DNA and RNA:
DNA: ds (double stranded) ➡️ Double helix, antiparallel, complementaryRNA: SS (single stranded) [Image]
Difference in monomers DNA and RNA:
DNA: deoxyribonucleotidesRNA: ribonucleotides
Difference of pentose sugar DNA and RNA:
DNA: deoxyribose (OH and H)RNA: ribose (x2 OH) [Image]
Difference of the base between DNA and RNA:
DNA: GATCRNA: GAUC
Difference in functions for DNA and RNA:
DNA: store genetic informationRNA: genetic info for making proteins in cytoplasm
Where are DNA and RNA found in the cell?
✔ DNA: Nucleus✔ RNA: Cytoplasm
What is chromatin?
✔ DNA packaged with proteins✔ Forms chromosomes [Image] [Image]
Name the base for DNA ➡️ GATC
G ➡️ GuanineA ➡️ AdenineT ➡️ ThymineC ➡️ Cytosine
Name the bases for RNA ➡️ GAUC
SAME AS DNA instead U replaces TU ➡️ Uracil
What is the direction of a DNA strand?
5’ → 3’
What do we find on carbon 5’ and 3’?
- Phosphate on 5’ carbon- Sugar + OHon 3’ carbon
What is the bas pair rule for DNA?
A - TC - G
Why arethe two strands of DNA considered antiparallel?
becaus their orientation is opposite5’ ➡️ 3’3’ ➡️ 5’
What are double helix?
form of DNA [Image]
How many combinations of aa are possible in a polypeptide (protein)?
20^nn = # of aa in protein
What does this represent? [Image]
ATP
What are the three components of ATP
- adenine- ribose- 3 phosphates [Image]
What is the role of ATP?
energy currency of cell ➡️ It gives cells the power to do work
What is the hierarchy of DNA/RNA structure?
- Polynucleotide/Nucleic Acid ➡️ long chain of nucleotides linked tgt2. Nucleotides ➡️ Pentose sugar + Nitrogeneous bases + Phosphate group3. Nitrogenous bases and sugars ➡️ GATC/GAUC and Deoxyribose/Ribose [Image] [Image] [Image]
What are the three components of nucleotides?
- phosphate group- nitrogenousbase- sugar [Image]
What is the name of this reaction? [Image]
Hydrolysis of ATP
Explain the hydrolysis of ATP: (3)
- ATP + water ➡️ ADP +P (inorganic phosphate) + release of Gibbs free energy- It’s inorganic because its not attached to a carbon-based molecule- ADP ➡️ because there’s not 3 phosphate but only two attached to the ribose and adenine ➡️ diphosphate
What is ATP hydrolysis associated with?
release of Gibbs free energy
What types of cellular work does ATP power, require energy? (3)
- Chemical work → Powers anabolic reactions (building molecules)2. Mechanical work → cellular mvt, muscle contraction3. Transport → molecules across CM
Describe ATP cylce
1️⃣ ATP is broken down through hydrolysis with water → Releases energy for the cell (for 3 types of cellular work)2️⃣ ADP & Pi are recycled → Energy from food recharges ATP.3️⃣ The cycle repeats so the cell always has energy [Image]
Name for releasing and input of Gibbs free energy
Exergonic ➡️ release G energyEndergonic ➡️ input of G energy
What is the backbone of proteins?
[Image]
What are pyrimidines?
single rings
Name the 3 pyrimidines
CUT
What are purines?
double ring
Name the 2 purines
AG
To which category of macromolecules do these belong and are they monomer polymers or others? [Image]
✅Carbohydrate➡️ lactose is a disaccharide SO NOT A POLYMER➡️ only polysaccharides are true polymers (starch, glycogen, cellulose, chitin)✅ others
To which categories of macromolecules do these belong and is it a monomer polymer or others? [Image]
✅ protein (polypeptide)💡Hint: peptide bond, R group of aa (side chains) and OH bonds between carboxyl and amino ends in secondary structure✅ polymer (repeating amino acids)
To which category of macromolecules do this belong and is it a polymer monomer or others? [Image]
✅ nucleic acid✅ in the picture, these are the monomers of nucleic acids
To which category of macromolecules does this belong and is it a polymer monomer or others? [Image]
✅ lipid💡hint there Is a carbon double bond in the middle, which means that it’s a unsaturated fatty acid✅ Others, because lipids are not true polymers they are not made of the same repeating monomer