Chapter 5- Antigen Recognition by T cells Flashcards

1
Q

T lymphocytes (T cells)

A

Cells that recognize conserved epitopes (antigens) in the context of MHC molecules. They have different roles in adaptive immunity

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2
Q

T-cell receptor (TCR)

A

Highly variable receptor expressed by T lymphocytes. It is a membrane bound heterodimer that is not secreted, unlike antibodies. They have a similar structure to immunoglobulins, are produced by somatic recombination, and have highly diverse antigen specificities. Similar to B cells, a clone of T cells expresses just one form of antigen receptor, but each clone has a different specificity for antigen

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3
Q

Naive cell

A

A cell that is circulating in the body and has not seen antigen. Naive T cells have left the thymus for the circulation

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4
Q

Major histocompatibility complex (MHC) molecule

A

T cells recognize antigens as a composite structure on the human cell surface that consists of the pathogen-derived peptide antigen and a bound MHC molecule, which is a glycoprotein. The combination of the peptide and the MHC molecule acts as a ligand for the T cell receptor

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5
Q

Polymorphism

A

The existence of different variants of a gene or trait in a population. MHC genes have a high polymorphism. Differences between the MHC molecules of an organ donor and recipient are the main reason for organ rejection.

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6
Q

Antigenic drift

A

Antigens change over time. Influenza is one example- small mutations are introduced through the viral replication process and its “coat” is changed. These antigens are targeted by vaccines, which is why the vaccine must be changed each year to target the new antigens

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7
Q

Listeria monocytogenes

A

Pathogenic agent of listeriosis, a disease linked to deli meats and cheeses. There are 1,600 cases per year and 260 deaths. Impacts pregnant women, newborns, the elderly, &
immunocompromised individuals. L. monocytogenes gains access to cells and can escape the macrophages. Also uses actin to “shoot” itself from one cell to the next. Demonstrates what happens when microbes are “hidden” from antibodies when they live inside cells. Antibodies cannot penetrate the cells

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8
Q

Antigenic shift

A

When enough mutations occur in a virus to create an entirely new virus

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9
Q

Importance of T cells and antigen presentation

A

Genetic differences in organ transplants or skin grafts are identified as “non-self” antigens, which can lead to rejection.

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10
Q

T cell receptor (TCR) structure

A

Contains single alpha (α) and beta (β) chains. Has a variable (V) region and constant (C) region, and a short cytoplasmic tail that acts as a membrane-anchoring domain. The structure represents a membrane-bound Fab fragment. It has only one antigen binding site, located at the ends of the chains. Receptors are always membrane bound, not secreted like an antibody. Unlike in B cells, there is no process of somatic hypermutation after the T cell is stimulated with an antigen, and there is no isotype switching

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11
Q

T-cell receptor gene organization

A

The genes encoding α and β chains have a germline organization, like that of immunoglobulin genes. They are also composed of arrays of gene arrangements that need to be rearranged to form a functional gene- V, D, and J, as found in immunoglobulins

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12
Q

TCR-alpha gene locus

A

TCR-alpha gene locus is on chromosome 14: has V-alpha and J-alpha gene segments

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13
Q

TCR-beta gene locus

A

TCR-beta gene locus is on chromosome 7: V-beta, D-beta, and J-beta gene segments

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14
Q

T-cell receptor diversity

A

Generated by gene rearrangement. This gene organization and process is homologous to that of immunoglobulin gene segments. One C-alpha gene and two C-beta genes; not directly
related to effector function like with antibodies. TCR gene segments are flanked by 12-bp and 23-bp RSSs. The same enzymes are involved (RAG1/RAG2, DNA-PK,
Artemis, etc.). Va-Ja recombination for TCR-alpha DB-JB, VB to DJB recombination for TCRB

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15
Q

Where does TCR recombination occur?

A

In the thymus

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16
Q

TREC

A

DNA circles resulting
from rearrangement; marker
for T cells that have left the
thymus

17
Q

T cell antigen recognition site

A

Formed from the variable α and β domains and is the most variable part of the molecule, similar to immunoglobulins

18
Q

Severe combined immunodeficiency (SCID)

A

A rare genetic disease occurring in 1 in 100,000 births. These patients have a lack of functional T and B cells. This may be due to RAG1/RAG2 mutations (Omenn
syndrome), Artemis mutation, or others. This means that the process of V(D)J recombination for B cells and T cells does not occur. Treatment involves a bone marrow transplant, enzyme replacement, or gene therapy

19
Q

Structure of second type of T cell

A

More abundant in tissues, especially the gut. Activated in a MHC-independent manner

20
Q

Normal proportions of B and T cells in the blood

A

T cells: 60-80%
B cells: 15-25%

21
Q

Gamma:delta T cell functions

A
  1. Lysis of infected or stressed cells
  2. Cytokine and chemokine production
  3. B cells help and IgE production
  4. Priming of alpha-beta cells via antigen presentation
  5. Dendritic cell maturation
  6. Regulation of stromal cell function via growth factor production
  7. Lysis of infected and stressed cells
22
Q

T cell antigens

A

Proteins are taken up into a cell and broken down into small stretches of peptides

23
Q

Intracellular compartments (3)

A
  1. Cytosol
  2. Nucleus
  3. Vesicular system
24
Q

Cytosol and nucleus

A

Viruses and some bacteria can be found here. Peptides are transported to the ER for loading onto MHC class 1

25
Q

Vesicular system

A

Includes the ER, Golgi, endosomes, and lysosomes. Microbes internalized by phagocytosis, and
receptor-mediated endocytosis, or can be broken down by digestive enzymes. Peptides are presented via MHC class 2

26
Q

Professional antigen presenting cells (APCs) (3)

A
  1. Macrophages
  2. Dendritic cells
  3. B cells
27
Q

Cross-presentation

A

Some pathogens do not directly
infect phagocytes. Dendritic cells can capture exogeneous proteins. Ingested proteins are degraded and presented on MHC class 1

28
Q

Bare lymphocyte syndrome

A

These patients lack MHC class 1. Prone to viral infections and developing certain types of cancer

29
Q

Calnexin

A

Stabilizes MHC class I heavy
chain; releases once beta-2m binds

30
Q

Tapasin

A

Brings heterodimer into close
proximity to TAP

31
Q

Calreticulin

A

Chaperone protein that binds to
MHC class I heavy chain

32
Q

ERp57

A

Stabilizes peptide loading
complex and prevents heavy chain from being broken down

33
Q

Antigens recognized by B cells vs T cells

A

Immunoglobulins recognize epitopes on a wide range of intact macromolecules, like proteins, carbohydrates, and lipids, which are found on pathogen surfaces and protein toxins. T cells recognize short peptide antigens that are derived by degradation of a pathogen’s proteins

34
Q

B cell vs T cell effector functions

A

In contrast to B cells, T cells carry out their effector functions through antigen-specific interactions with other cells of the body.

35
Q

T cell constant regions

A

Important for binding to the cell- doesn’t determine isotype like immunoglobulins