Chapter 20 (Pentose Phosphate Pathway) Flashcards
Pentose Phosphate pathway + ATP
Pentose Phophate pathway does not produce ATP
Parts of PPP
1 – Oxidative pathway (Generates NADPH)
2 – Non-Oxidative pathway (Interconversion of sugars)
Where is the Rate Limiting Step in PPP
In the oxidative Pathway
Where is NADPH produces in PPP
NADPH is produced in the Oxidative Reaction
PPP + other Pathways
PPP –> Glycolysis –> TCA –> ETC
Rate Limiting Enzyme in PPP
Glucophopsphate Dehydrogenase
**In the oxidative step
**Serves as control site for oxidative branch of pathway
***Most important regulatory factor = NADP+
Where does PPP occur
Occurs in the cytoplasm– both phases occur in the cytoplasm
Cofactor for Translocase
Vitamin B1
***Vitimin B1 definciey = have an inssue in the non-oxidative path
- Deficeinc ey in B1 –> Leads to problems in RBCs –> Causes Anemia + Hemolatic disease of newborn
Anemia
Have sickle cell (moon shaped cells) rather than circular cells = lose RBCs
Erythose-4-Phosphate
Erthrose site = electrolyte
Fate of GAP in PPP
GAP can go to Glycolysis
***If PFK 1 doesn’t work then PPP can join glycolysis to help make PPP (because it can make GAP and bypass PFK1)
Key product of PPP
NADPH
NADPH
The source of biosynthetic reducing power
What does PPP produce (general)
NADPH + 5 carbon sugars
Purpose of the first phase of PPP
The first phase of the PPP is the oxidative generation of NADPH
- Purpose is to generate NADPH
***First phase (Oxidative phase) makes NADPH
PPP Equation (NET)
Glu-6_P + 2NADP+ + H2O –> Ribulose-5-P + 2NADPH + 2H+ + CO2
Purpose of the second phase of PPP
Non-oxidative interconversion of a variety of Phsphorylated 3,4,5,6, and 7 carbon sugars
- Second phase makes carbon backbone molecules
- Excess 5 Carbon sugars can be converted into the intermediates of the glycolytic pathway
Example – 2nd phase can make GAP (3 Carbons)
Pathways that require NADPH
Overall = Synthesis + Detoxification
Synthesis:
1. Fatty Acid Biosynthesis
2. Cholesterol Biosynthesis
3. Neurotransmitter biosynthesis
4. Nucleotide biosynthesis
5. RBCs
Detoxification:
1. Reduction of Oxidized Glutathione
2. Cytochrome P450 monooxygenases
***NADPH = used in Reductive biosynthesis + protection against oxidative stress
Two forms Glutathione
- Oxidized
- Reduced
Pentose Phosphate Pathway
Glu-6-P –> Ribulose-5-P
- Ribulose5-P –> Xylulose-5-P or Ribose-5-P
***SLIDE 5
NADPH PRODUCTION
2 molecules of NADPH are generated in the conversion of Glucose-6-Phosphate –> Ribulose-5-P
What intiates the Oxidative phase
Glucose-6-P dehydrogenase
***Glucose-6-P dehydrogenase initiates the oxidative phase of the PPP
- INTIATED – by the conversion of Glucose-6-P –> Phosphoglucono lactone
Rate limiting step in PPP
Glucose-6-P –> 6-Phosphoglucono lactone
Glucose-6-P –> Phosphoglucono lactone
1st step of PPP (1st step of oxidattive poahe)
- Initiates PPP
- Rate Limiting step
- Irreversible
- In the process NADP+ is reduced to NADPH
***Enzyme = Glucose-6-P dehydrogenase
Production of NADPH (depth)
- First made in conversion of Glu-6-P to 6PGL
- Second is made in conversion of 6-PGL –> Ribulose-5-P + CO2
***Both made in oxidative phase
Reversibility of Oxidative Phase
All irreversible – all enzymes involoved are irreversible
Oxidative Phase of PPP (depth)
Photosynthetic organisms + NADPH
Photosynthetic organisms use light to generate NADPH
NADPH in all organisms
There is a path present in all organisms to generate NADPH –> helps cells meet NADPH needs in non-photosynthetic organisms + in non-photosynthetic tissues in plant
Use of PPP
PPP = crucial source of NADPH
How much NADPH is produced
2 molecules of NADPH –> done in conversion of Glu-6-P –> Ribulose-5-P
Oxidative Pahe depth
- Start with dehydrogenation of Glu-6-P at C1
- Catylyzed by Glu-6-P dehydrogenase
Glu-6-P –> 6-PGL
- Catylyzed by Glu-6-P dehydrogenase
- 6-PGL is hydrolyzed
- Catylyzed by Lactonase
6-PGL –> 6-Phospho-gluconate
- Catylyzed by Lactonase
- Oxidative decarboxylation of 6-phosphogluconate
- Produces Ribulose-5-P + NADPH
6-Phosphogluconate –> Ribulose-5-P
6-Phosphoglucono Lactone
Intramolecular ester between C1 crabanyl and C5 OH group
6-Phosphogluconate
6 Carbon sugar acid
Link between PPP and Glycolysis
PPP and Glycolysis are linked by Transketolase and Transaldolase
Potential Fates of Ribulose-5-P
- Ribose-5-P
- Xyulose-5-P
Ribulose-5-P –> Ribose-5-P
Ribulose-5-P can be isomerized to Ribose-5-P
***Catylyzed by Phosphopentose isomerase
Where can Ribose-5-P be used
Ribose-5-P and dertaibes of it = used in RNA + DNA + ATP + NADH + FADH2 + CoA
- Ribose-5-P = precurssor for many biomolecules
Making Ribose-5-P vs. NADPH
Ribose-5-P = precurssory for many biomolecules BUT many cells need NADPH for reductive biosyntehsis more than they need Robose-5-P to be encorporated into nucleotides
Example – Adipose Tissue + Liver + Mammary glands = need NADPH for Fatty Acid Synthesis – in this case Ribose-5-P is converted to GAP –> Fru-6P by transketolase and Transaldose
Net result of Transketolase and Transaldolase
Formation of 2 Hexroses + 1 Triose from 3 pentose
3 C5 –> 2 C6 + C3
Overall Reactions in Non-Oxidative Phase
C5 + C5 –> C3 + C7 (Transketolase)
C3 + C7 –> C6 + C4 (Transaldolase)
C4 + C5 –> C6 + C3 (Transketolase)
NET: 3 C5 –> 2 C6 + C3
***ALL REVERSIBLE REACTIONS
Reactions in Non-Oxidative Phase
- Formation of GAP and Sedoheptulose from 2 pentoses
- GAP and sedpheptulose = reaction to from Fru-6-P and Erthrose-4-P
- Ribulose-5-P is converted into Xylulose (epimer of Ribulose)
- Caytylyzed by Phosphopentose epimerase - Tranketolase catylyzes synthesis of Fru-6-P and GAP from Erthrose-4-P and Xylulose-5-P
SUM of Reactions: 2Xylulose-5-P + Ribose-5-P –> 2Fru-6-P + GAP
Formation of GAP and Sedoheptulose
Formed from Xyulose-5-P + Ribose-5-P
Xylose-5-P + Ribose-5-P –> GAP + Sedohetulose-7-P
Overall: 2 five carbon sugares –> converted to a three and sevent carbon sugar
***Catalyzed by Transketolase
THEN – GAP and sedpheptulose = reaction to from Fru-6-P and Erthrose-4-P
Formation of GAP and Sedoheptulose (depth)
Xylulose-5-P = acts as donor of 2 Carbon unit
Substrates for Transketolase
Ketose substartes –
For Formation of GAP and Sedoheptiulose requires – ONLY in OH at C3 with configuration of Xylulose NOT the configuration of Ribulose
Xylulose-5-P
Epimer of Ribulose-5-P
***Substrate for transketolate –> transketolase requires that it is in the confisguation of Xyulose-5-P (C3 OH is in the Xyulose confirmation NOT the Ribulose confirmation)
Ribulose-5-P –> Xylulose-5-P
Flips configuration of OH at C3 –> needed for transketolase to function
***Catylyzed by Phsphopentose epimerase
- Occurs in Calvin Cycle
All enzymes in non-oxidative phase
Are reversible
Fate of GAP and Sedoheptulose-7-P
They react to form Fru-6-P and Erthrose-4-P
***Catylyzed by Transaldolase
- Occurs in calcin Cycle
Transaldolase
C3 + C7 –> C6 + C4
GAP + Sedohetulose-7-P –> Fructose-6-P + Erthrose-4-P
Where is Erythrose-4-P
In RBCs
Transketolase
C4 + C5 –> C6 + C3
Erthose-4-P + Xylulose-5-P –> Fru-6-P + GAP
Fate of Erthose-4-P + Xylulose-5-P
Forms Fru-6-P + GAP
***Caylyzed by Transketolase
Three enzymes in Non-oxidative
- Epimerase
- Transketolase
- Transaldolase
NET non-oxidative pathway
2Xylulose-5-P + Ribose-5-P –> 2Fru-6-P + GAP
***Shows the conversion of 3 C5 into the components of glycolitic and gluconogenic pathways
END NET – NET (of non-oxidative): 3Ribose-5-P –> 2 Fru-6-P + GAP
- net is due to conversion of Robose-5-P –> Xyluose-5-P
Ribose-5P –> Xylulose-5-P
Ribose-5P –> Xylulose-5-P – catylzed by sequuentia actions of:
1. Phosphopentose Isomerase
2. Phsphopentose Epimerase
Makes NET (of non-oxidative): 3Ribose-5-P –> 2 Fru-6-P + GAP