Chapter 2: Biological Molecules Flashcards
How do saturated and unsaturated lipids vary in structure
Sat have C-C only single bonds
Unsat have double bonds
What are 3 types of unsaturated lipids in terms of no. of double bonds
Mono unsat
Di unsat
Poly unsat
Which states are sat and Unsat lipids at room temp, and what are their originsm
Sat - solid, animals
Unsat - liquid, plants
Why are unsat lipids liquid at room temp
Double bonds make them melt more easily because the double bond causes gaps in the tail
What is the formula for formation of an Ester?
(carboxylic) acid+ alcohol —> ester + water
Recall structural formulae equation
How is a triglyceride molecule formed (process and raw materials)
Glycerol+ 3 Fatty acids with hydrocarbon tails
—> By-product water and Triglyceride molecule
—> = Condensation
Recall structural formulae equation
How is a phospholipid formed
When one of the 3 fatty acids in triglyceride is replaced by a phosphate group
What is a dipole
Unequal distribution of charge
Where do dipoles essential occur
Molecules containing -OH, -CO & -NH groups
What is a hydrogen bond (eg in water)
In water negatively charged oxygen of one molecule is attracted to positively charged hydrogen of ANOTHER molecule, the attraction between the 2 is the H bond
Note: the attraction between 2 atoms WITHIN the SAME molecule is the covalent bond
What are polar molecules
Having dipoles
HYDROPHILIC
Why are non polar molecules insoluble
They not have dipoles (uncharged) to attract dipoles of water molecules
HYDROPHOBIC
What is the specialty of H bonds?
Individually weak, but collectively very strong
Which lipids are sol and which are insol
And why
Sol-phospholipid(hydrophilic) : charged phosphate attracts partially +ve hydrogen
Insol-triglyceride(hydrophobic) : no charged groups
Tests (2) for lipids:
- 1cm3 unknown + 1cm3 of alcohol/organic solvent (ethene) —> sample dissolved if lipid is present
- 1cm3 of unknown + 1cm3 of water —> sample will not dissolve if lipid is present(emulsion)
Confirmatory test for lipids:
1cm3 unknown + 1cm3 organic solvent —> lipid will dissolve
Transfer to testtube with water. Milky white ppt formed, lipid is confirmed
Why are lipids significant energy reserves
They are richer in carbon-hydrogen bonds than carbs, which when broken supply hydrogen yo make nadh and fadh2.
A given mass of lipids yields more energy on oxidation than same mass of carb (high caloric value)
How are lipids insulators
Below the dermis of skin, and around the kidneys it prevents heat loss
Lipids can be blubber. What is this
In sea mammals, insulated and provides buoyancy (float)
How are lipids metabolic sources of water
When oxidised in respiration they are converted to CO2 and H2O. It is important for survival in dry habitats
General formula of carbohydrates :
Cx (H2O) y
Carbohydrates aka
Hydrates of carbon
Elements in carbs:
C
H
O
What 3 types of carbs
Monosaccharides (1 sugar unit)
Disaccharides
Polysaccharides
Examples of
Monosaccharides
Disaccharides
Polysaccharides
Mono - glucose, fructose, galactose
Di- maltose, sucrose, lactose
Poly- starch, glycogen, cellulose
General properties of monosaccharides :
- 1 sugar unit
- sweet in taste
- easily soluble in water
- general formula : (CH2O) n
Types of monosaccharides based on n (name, n, formula, eg)
Trioses n=3 C3H603 glyceraldehyde 3 phosphate
Tetroses n=4 C4H8O4 trythulose
Pentoses n=5 C5H10O5 ribose and deoxyribose
Hexoses n=6 C6H12O6 glucose, galactose, fructose
Linear structure of glucose
Recall structure (aldehyde/ketone and carbonyl groups, 6 carbons)
How is ring structure of glucose formed from linear
Long chain of carbon atoms is enough to close up on itself to form stable ring
Recall the ring structure of glucose
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Structural difference between α and β glucose?
α- anomeric carbon (C1) has H bonds at top and OH at bottom
β- C1 has H bonds at bottom, and OH at top
Recall exact structures of α & β glucose
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Where is anomeric carbon derived from
Carbon of ketone/aldehyde functional group of the open chain form of carbohydrate
What is anomerization
Process of interconversion of one anomer to another
3 roles of monosaccharides
2f acts as building block (glucose: starch glycogen, cellulose)
Nucleic acid (RNA & DNA, each have basic functional unit ie nucleotide, which is made of PO3-, nitrogenous base- A, G, T, C, U, pentosugar)
Many C-H bonds broken to release energy which is transferred to help make ATP
What are sucrose, lactose, maltose made of?
Sucrose= glucose + fructose ( transport form in plants, sold sugar) Lactose= glucose + galactose (milk sugar) Maltose= glucose + glucose (malt sugar)
Difference between reducing and non reducing sugars?
Red- free anomeric carbon (c1)
Non red- free anomeric (c1) carbon absent
Examples of red and non red sugars
Red- maltose, lactose
Nonred- sucrose
Bonds involved in monosaccharides and in disaccharide maltose and process. Also recall structural formulation of maltose
α glucose + α glucose —> α1,4 glycosidic bond (C-O-C) by condensation
Bonds involved in monosaccharides and in disaccharide sucrose and process. Also recall structural formulation
α glucose + β fructose —> β1,2 glycosidic linkage by condensation
State the test for reducing sugars and the mechanism
1cm3 of sugar+ 1cm3 of benedicts (CuSO4) reagent (excess to react all sugar) —> brick red ppt (confirms)
Reducing sugar+ Cu(II) blue —> brick red ppt(Cu+) + oxidised sugar
Cu2+ reduced to Cu+ by reducing sugar
Steps for testing for a non reducing sugar:
1) Convert it to reducing sugars
2cm3 of non red sugar + 1cm3 HCl —mix and heat 2min, break glycosidic bond—> α glucose + β fructose
2) Neutralise HCl
Add 1ml of NAOH OR NAHCO3 until fizzing stops (benedicts works best under alkaline condition)
3) Perform benedicts.
To above + 2ml benedicts –heat–cool–> brick red ppt (confirms presence of non red sugar). If no color change still no sugar
Why use excess benedicts ?
Ensure all reducing sugar has reacted
This helps in calculating exact concentration of sugar in solution using a colorometer
How does color of ppt change for benedicts with concentration of sugar
Intensity
Blue, green, yellow orange red, brick red
Outline how benedicts test can be used to estimate concentration of a reducing sugar
Add benedicts. Heat in water bath. Will turn gradually from green, yellow, orange, red as insol Cu(i) oxide forms a ppt.
Use color standards made by comparing color against colors obtained with reducing sugar tests of known concentrations.
Or use colorimeter to measure more precisely (graph of conc plotted against colorimeter reading)
Why are they called reducing sugars?
Can carry out reduction, by themselves getting oxidised in the process. (lose electrons, to make other reactant ion less positively charged)
How can a benedicts test tell you if both reducing and non reducing sugars are present
Ppt obtained in non reducing test will be heavier than benedicts normal test
What are Polysaccharides
Made up of more than 2 sugar units
What is starch
A Polysaccharide, storage form in glucose in plants, in chloroplasts.
What is starch made up of
Amylose and amylopectin
Structure of Amylose
Polymer of α glucose
α 1,4 glycosidic bond
Structure of amylopectin
Polymer of α glucose
α 1,4 and α 1,6 glycosidic bonds
Branched
Structure of glycogen :
Polymer of α glucose
α 1,4 and α 1,6 glycosidic bond
More branching than in amylopectin
Function of glycogen
Storage form of glucose in animals. Stored in muscle and liver cells
Why can glucose not be stored as such in cells
It is very reactive and will affect cell chemistry badly.
It will dissolve the cytoplasm and make it too concentrated that will further sensitively affect osmotic properties of the cell
Why is glucose stored as glycogen
It is inert (unreactive)
Needs less space
Insoluble doesn’t affect osmotic properties of cell
Most abundant organic molecule in plant ?
Cellulose
Structure of cellulose:
Polymer of β glucose with β 1,4 glycosidic bond
In the β isomer the -OH group on C1 is above ring. In order to form a glycosidic bond with C4 where -OH group is below ring, one glucose must be upside down (180°) relative to the successive one
How do cellulose fibres provide strength to cell wall
- Adjacent cellulose molecules are held by hydrogen bonds between +H and -O
- Individual H bonds are weak, collectively strong
- Many cellulose form microfibrils, many of these form fibres
- Cell wall has several fibres running in different directions to provide strength
How do cellulose molecules form fibres?
60-70 molecules are tightly cross linked to form bundles called microfibrils. These are held together in bundles called fibres by hydrogen bonding
Why are cellulose fibres so strong
Arrangement of β glucose molecules in such a way that hydrogen bonds existing between the large no. of -OH groups collectively provide huge strength
Enzymes are which organic molecule
Proteins