Chapter 2-3-4: Prokaryotic Cell Structure & Function Flashcards
Microscope
set of 2 or more lenses
Parts Necessary to Have Functional Microscope
- light source
- objective lenses
- coarse & fine adjustment knobs
- ocular lenses
- diaphragm
Microscopy Concepts
- Magnification
- Resolution
- Illumination
- Magnification (Job of the Lenses)
increase in the apparent size of the specimen
- increases size of image (not object)
calculated by multiplying magnification factor of lenses
= objective x ocular
- Resolution
the minimum distance that two objects can be separated from one another, and still be recognized as distinct objects rather than 1 larger “fuzzy” object
- minimum distance between 2 objects where they still are seen as 2 different objects
- Resolution (Increasing Resolution)
- oil: higher refractive index than air (allows light to stay and be collected into objective lens)
- decreasing illumination wavelength (smaller the wavelength, better the detail ex. slide 10)
- focusing illumination light (condenser) helps focus light
Resolution VS Magnification
Magnification: refers to the enlargement of the image
Resolution: refers to the ability to distinguish two objects located very close as being separated entities
(higher #= better the resolution)
- Illumination: Brightfield
method of lighting the specimen from opposite the objective
- specimen appears dark against a light background
- common method of lighting
- specimen interferes with light coming through
- Illumination: Darkfield
- illumination of the specimen without projecting light directly into the objective
- used to examine specimens which cannot be distinguished from the background
- unstained; living
- accomplished by specialized microscopic lighting techniques
Preparation & Staining of Specimens (Purpose & Process)
Purpose:
- increased visibility
- accentuates specific morphological features (enhancing)
- preserves specimens
Process:
- fixation
- staining
- visualization
Fixation
preservation of internal & external structures
- organism is killed and firmly attached to microscope slide
Methods: Heat & Chemical Fixing
Heat Fixing:
- good for maintaining external structures
- preserves overall morphology (not internal structures)
Chemical Fixing:
- protects fine cellular substructure and morphology of larger, more delicate organisms
- well preserved internal structures
Staining: 1. Dyes & Simple Staining- Dyes
Dyes: makes structures more visible & increase contrast
- cell structures more visible
- increasing contrast
- common features
- chromophore groups (color)
- ability to bind cells
- types
- basic + charged (bind to - charged cells ex DNA)
- acidic - charged
Staining: 1. Dyes & Simple Staining- Simple Staining
- single agent
- frequent used basic dyes
- e.g crystal violet; methylene blue
Staining: 2 Differential Stains
divides microorganisms into groups based on their staining properties
Examples
- gram stain (most widely used- allows differentiation between gram + & gram - bacteria)
- acid-fast stain
- staining of specific structures
Gram Staining
- Christian Gram (1884)
- most widely used
- two groups
- Gm+, Gm-
- differences in cell wall structure
Mordant
compounds that like to stick
Example of Getting Info From Name: Staphylococcus
staphylo- grape (bacteria sticks together)
coccus- sphere (sphere shaped)
Acid-Fast Staining
- stains bacteria that is hard to stain
- stains Mycobacterium- cannot be stained by Gram staining (cell wall made of thick lipids)
- e.g. M. tuberculosis; M. leprae
- staining characteristics: high lipid content in cell walls
Negative Staining
- visualize capsules
- colorless against a stained background
- capsules are sensitive (do not use heat fixation) instead air-fix specimen
- structure you’re trying to visualize stays colorless
Spore Staining
- double staining technique
- bacterial endospore (resistant) vs. vegetative cell (cell growing actively)
Flagellar Staining
mordant to increase thickness of flagella
Phase-Contrast Light Microscopy
- living cells (not fixed)
- no stain
- light reflects from specimen
Electron Microscopy
- transmission (cut specimen in very thin slices) see details IN specimen
- scanning (use electrons to scan surface of the specimen) see details ON specimen
Overview of Prokaryotic Cell Structure
- a wide variety of sizes, shapes, and cellular aggregation patterns
- simpler than eukaryotic cell structure
- unique structures not observed in eukaryotes
Cocci (s., coccus)- spheres
- diplococci (s., diplococcus)- pairs
- streptococci- chains
- staphylococci- grape-like clusters
- tetrads- 4 cocci in a square
- sarcinae- cubic configuration of 8 cocci
Bacilli (s.,bacillus)- rods
- coccobacilli- very short rods
Overview of Prokaryotic Cell Structure: Vibrio
“comma” shaped
Overview of Prokaryotic Cell Structure: Spirilla
s.,spirillum- rigid helices
Overview of Prokaryotic Cell Structure: Spirochetes
flexible helices
Can you differentiate between spirilla and spirochetes?
No, you can’t differentiate them unless they’re moving
Overview of Prokaryotic Cell Structure: Filamentous
form hyphae
Overview of Prokaryotic Cell Structure: Mycelium
branched hyphae
Overview of Prokaryotic Cell Structure: Pleomorphic
bacteria without a single characteristic shape (form)
Plasma Membrane
selectively permeable barrier, mechanical boundary of cell, nutrient and waste transport, location of many metabolic processes (respiration, photosynthesis), detection of environmental cues for chemotaxis
Gas Vacuole
an inclusion that provides buoyancy for floating in aquatic environments
Ribosomes
protein synthesis
Inclusions
storage of carbon, phosphate, and other substances; site of chemical reactions (microcompartments); movement
Nucleoid
localization of genetic material (DNA)
Periplasmic Space
in typical Gram-negative bacteria, contains hydrolytic enzymes and binding proteins for nutrient processing and uptake; in typical Gram-positive bacteria, may be smaller or absent
Cell Wall
protection from osmotic stress, helps maintain cell shape
Capsules and Slime Layers
resistance to phagocytosis, adherence to surfaces
Fimbriae and Pilli
attachment to surfaces, bacterial conjugation and transformation, twitching
Flagella
swimming and swarming motility
Endospore
survival under harsh environmental conditions
Bacterial Cell Envelope
contains plasma membrane and surrounding layers
Bacterial Plasma Membrane
(one of the major places to “dock” things)
- separation of cell interior from environment
- selectively permeable
- transport systems (food in, waste out)
- crucial metabolic processes
- respiration, lipid synthesis, etc.
- photosynthesis
- membrane receptors
- TM proteins
- detection of/response to chemicals
Bacterial Plasma Membrane cont.
- highly organized, asymmetric, flexible, & dynamic
asymmetric (what is facing outside is not always same as facing inside)
dynamic (have the ability to change, gives ability to perform differently)
Bacterial Plasma Membrane Contents
- phospholipids
- proteins (2 main components)
- peripheral membrane proteins- loosely associated with cell membrane
- integral membrane proteins- in cell membrane
- “fluid mosaic model”
Phospholipids are Ampipathic
both a hydrophobic and hydrophilic end
Phosphatidylethanolamine
main phospholipid in bacterial cells
Uptake of Common Required Nutrients: Macroelements
macronutrients (most cell dry weight)
- C,O,H,N,S,P
- K+, Ca2+, Mg2+, & Fe2+/3+
- required in relatively large amounts
Uptake of Common Required Nutrients: Micronutrients
trace elements
- Mn, Zn, Co, Mo, Ni & Cu (small amounts)
- required in trace amounts
- enzyme cofactors
- often supplied in water or in media components
Growth Factors
essential cell components (or precursors); cell can’t synthesize
- organic compounds
Classes of Essential Cell Components
- amino acids
- purines & pyrimidines
- vitamins
- function as enzyme cofactors
*cells cannot synthesize & required for enzyme activity
Mechanisms for Uptake of Nutrients
- passive diffusion (some)
- facilitated diffusion
- active transport
- iron uptake
Passive Diffusion
- higher concentration to lower concentration
e.g. H2O, O2 and CO2
Facilitated Diffusion
similar to passive diffusion
- not E dependent
- high concentration -> low concentration
- size of gradients impacts uptake rate
Facilitated Diffusion Differs from Passive Diffusion
- carrier molecules (permeases)
- smaller concentration gradient required
- transport of glycerol, sugars & amino acids
- more prominent in eukaryotic cells than in prokaryotic cells
- doesn’t happen very often in prokaryotic cells
Facilitated Diffusion
- rate increases more rapidly and at a lower concentration
- rate reaches plateau
- carrier saturation effect
- (permeases) if there are 5 molecules inside cell, you cannot take anything more than 5 in until ones inside are fully saturated
- high concentration gradient, high rate of transport
- more outside, faster the process
Active Transport
- against concentration gradient
- energy-dependent process
- energy comes from ATP or proton motive force
- concentrates molecules inside cell
- accumulates molecules in case of “starvation”
- requires carrier proteins (permeases)
- carrier saturation effect
- example:
- ABC transporters
- secondary active transport
- group translocation