Chapter 11: Proteins: Amino Acids and Peptides Flashcards
Describe PKU.
Individuals with PKU must not consume phenylalanine (since it is not synthesized). Tyrosine is a byproduct of phenylalanine. When no Phe is available, additional Tyr must be consumed to meet the body’s needs (conditionally essential AA).
Which plant source is known for its high quality? How is it treated? Which amino acid is limiting?
- Soybeans
- Must be heat processed for several hours to destroy toxic compounds that prevent the complete digestion of proteins
- Low in methionine
Which amino acid is often limiting in cereal grain? Which others are limiting in plant-based products?
Cereal: Lysine
Others: Tryptophan, Threonine
Name some combinations that provide adequate amounts of AA.
- Whole-wheat bread + peanut butter
- Rice and red beans
- Refried beans and corn tortilla
- Hummus (chickpeas + sesame seeds)
Which amino acids are used in lipoprotein clusters?
AA with nonpolar side chains, positioned toward the outsides of the molecules, allowing them to attract cholesterol molecules
Which AA have a hydroxyl group?
Serine, threonine, tyrosine (causes a polar nature)
What are proteins composed of?
Carbon, Hydrogen, Oxygen, Nitrogen, usually Sulfur
What else can be contained in protein composition?
Iron, Copper, Phosphorus, Zinc
What is the basic subunit of proteins?
Amino acids
Name the 3 parts of the amino acid.
- Side chain of C and H
- Carboxyl group (COOH)
- Amine group (NH2)
Which part of the amino acid acts as the acid? As the base?
Acid: carboxyl group
Base: amine group
How do amino acids combine?
carbonyl carbon and amide nitrogen combine and form a peptide bond through condensation (released water)
Define polypeptide.
Chain of amino acids bound together by peptide bonds.
How many AA are in most proteins?
100 to 150 AA
How are AAs classified?
1) By their nutritional use
2) By the chemical nature of their side chain
Compare dispensable and indispensable AA.
Dispensable/nonessential: made by the body (11)
Indispensable/essential: not made by the body and must be supplied by the diet (9)
Name the 9 essential amino acids.
Histidine, Isoleucine, Leucine, Lysine, Valine, Methionine, Phenylalanine, Threonine, Tryptophan
What causes conditionally indispensable AA?
Certain conditions prevent the body from producing enough dispensable AA and they have to be obtained from the diet
(not in healthy individuals)
Compare complete and incomplete protein sources.
Complete: contain all the indispensable AA
Incomplete: grains and vegetables are short one or more of the essential AA
How do vegetarians get complete proteins?
Combining sources (ex: beans + rice)
Name the 4 types of amino acid side chains.
- Nonpolar
- Uncharged polar
- Positively charged
- Negatively charged
Which amino acid side chains are less soluble in water?
Nonpolar sidechains
Which amino acid side chains will form hydrogen bonds and are attracted to polar molecules?
AA with neutral sidechains
Which amino acid side chains can function as buffers?
Positively and negatively charged
Name 3 reasons why protein structure is complex.
1) Number of amino acids
2) Order in which they combine
3) Interaction of the sidechain
Define primary structure.
The order the amino acids occur in the sidechain; results from chain of peptide bonds.
Define secondary structure.
Refers to the shape of sections of the protein
Define tertiary structure.
Refers to the 3D structure of an entire AA chain
Name the 3 types of secondary structure
1) Helix: repeating coil
2) Random coil: tangled and twisted
3) Pleated sheet: like a paperfan
Differentiate the 2 types of tertiary structure.
1) Globular proteins do not form gel networks (do not hold water)
2) Fibrous proteins form gel networks, long elastic, usually made from helix-shaped strands
How do H-bonds form in proteins?
Form between the H-atom of one chain and the hydroxyl group of another
Name the 2 functions of H-bonds in proteins.
- Basic to the stability of 2nd and 3rd structures
- Make some proteins water soluble
Define disulfide cross-links
Covalent bonds between 2 protein molecules at side chains with sulfur
What is the function of disulfide cross-links?
The more stable disulfide bonds, the more stable the molecule