Chapter 10 - Eukaryotic chromosome Abnormalities and organization Flashcards

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1
Q

Process for creating a chromosome spread?

A

1 - sample white blood cels, treat with a solution to cause dividing

2 - use colchicine to disassemble microtubules,

3 - add to chambered slide in a hypotonic solution to cause swelling

4 - centrifuge cells, cells explode

5 - arrange chromo spread

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2
Q

What is the FISH test?

A

Flourescent In-Situ hybridization
maps genetic material in human cells

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3
Q

What is g-banding

A
  • displays condensation levels of Euchromatin and heterochromatin in order to determine a deletion/duplication in genes
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4
Q

What is euchromatin ?

A

transcriptionally active chromatin

displays a light stain on g-band test

decondenses in interphase

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5
Q

what is heterochromatin?

A

transcriptionally inactive chromatin
darker band
stays condensed

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6
Q

What are the types of heterochromatin?

A

Constitutive - areas of the chromosome that are always condensed
———-centromere: contins structural DNA, no genes, remains condensed
———–Telomere - remain condensed

Facultative - sometimes…
———-tissue specific and or developmental stage specific

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7
Q

What is euploid?

A

Euploid is having an equal number of copies of each gene on all chromosomes, even if this is not the wild type number

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8
Q

what is aneuploid, and what effect does it have on the gene dosage?

A

Unequal number of copies of each gene on all chromosomes

gene dosage is off… causes many problems

ex: trisome 13

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9
Q

What causes aneuploidy?

A

Non disjunction

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10
Q

Result of nondisjunction in meisos I?

A

all aneuploid ( trisomic, monosomic)

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11
Q

result of nondisjunction in Meiosis II?

A

50% aneuploid (25% trisomy, 25% mono)
50% euploid

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12
Q

Three examples of autosomal aneuploidy

A

trisomy 13 - patau syndrome
trisomy 18 - edward syndrome
trisomy 21 - down syndrome

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13
Q

four examples of sex-chromosome aneuploidies

A

47, XXY - klinefelter, M
47 XYY - jacob syndrome, M
47 XXX - triple X, F
45 XO - turner , F

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14
Q

Describe mosaicism

A

Mosaicism is when 46, XX (wild type) experience non disjunction in meiosis, yielding 46 XX (wild type) and 45 XO/ 47 XXX, which are all included int he karyotype

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15
Q

Describe uniparental disomy

A

Uniparental disomy is when both homologs are passed from one parent

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16
Q

how does a uniparental disomy occur

A

nondisjunction of the same chromosome in both sperm and egg

nondisjunction in one parent –> aneuploid gamete
———trisomy rescue

17
Q

what is a trisomy rescue?

A
  • one chromosome randomly gets kicked off
18
Q

What are the type of polypoidy?

A

autopolypoloidy - chromosomes from the same species (plants, sometimes we do on purpose (genetic modified food)

allopolyploidy - chromosomes from different species

19
Q

What determines if a species is fertile?

A

Even number of gametes = fertile
odd number = not fertile
ex: horse (64) x donkey (62) = mule (63)

20
Q

Describe a terminal deletion

A
  • partial deletion of a chromosome, lost in cell division
  • length missing depends on if organism is viable or not
21
Q

describe interstitial deletion

A
  • many small deletions within p or q arms
    -tests can be done to detect these deletions if symptoms arise
22
Q

Describe a duplication

A

extra genetic material

unpaired loops caused by chromosomes trying to line up and pushing duplicated portion out

23
Q

What does detection of a deletion/duplication look like in a FISH test?

A

Wild type - FISH probes A…(centro)…BC

Deletion - A…(centro)……C

duplication - A….(centromere)…BBC

24
Q

describe unequal crossing over?

A

1 - PMSa and PMSb misalign, a copy of PMS on each chromo loops out, unequal crossing occurs…

2 - recombinations:
deletion missing the 17 genes between PMS duplicates
duplication with PMS a and b, hybrid gene and duplication of the 17 genes

25
Q

Describe the two types of inversions?

A

a segment of chromosome is broken and rotates
Paracentric inversion - doesnt involve centromere

Pericentric inversion - does involve centromere

26
Q

How do inversions occur

A

1 - inversion loop occurs when chromosomes are trying to line up in meiosis

2 - there is a crossover between homologs, resulting in two viable gametes and two nonviable gametes (50% reduction in fertility)

27
Q

what are the three types of translocations?

A

unbalanced translocation

reciprocal balanced translocation

robertsonian translocation

28
Q

Describe unbalanced translocation

A

chromosome breakage occurs, translocated to a difference chromo… unbalanced sizes of chromosomes…

29
Q

describe reciprocal balanced translocation

A

there is an exchange in chromosome pieces, resulting in balances sizes of chromo

30
Q

describe robertsonian translocation

A

chromosome broken at centromere, p arm is lost and q arm is added to a normal chromosome.

31
Q

What is chromatin?

A

linear in shape, consists of DNA + Protein

DNA (coding/noncoding)
Protein(histone and nonhistone)

32
Q

What are the orders of packing

A

1 - 2 nm duplex (nucleosome, linker dna)
2 - 10 nm beads on a string (histone H1)
3 - 30 nm fiber, solenoid
4 - 300 nm chromatid…. looped chromatid, scaffold proteins
5 - 700 nm chromatid….. coiled chromo arm
6 - 1400 nm mitotic chromosome…. sister chromatids

33
Q

What is a histone protein?

A

consists of two tetramers… H2B, H2A, H3, H4

34
Q

How many base pairs of dna coil around a histone

A

146 bp

35
Q

What kind of replication is histone replication?

A

Semi conservative (partially old histones with newly synthesized histones)

36
Q

What is the position effect?

A

expression of a gene is influenced by where it is in the chromosome

37
Q

Describe the eye color phenomenon of the fly

A

1 - wild type: red eye color, W+ gene is expressed outside of the centromere, in a less compacted region
2 - variegated eye color: inversion moves W+ gene near the centromere, the gene is silenced when moved into heterochromatin which is more compacted, but expressed when outside the heterochromatin