Chapter 1 - The Chemical Basis of Life (1) Flashcards

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1
Q

Isotopes

A

atoms of an element with different mass, due to a differing number of neutrons
isotopes have the same chemical properties but slightly different physical properties

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2
Q

Radioisotopes

A

unstable isotopes that emit alpha, beta particles or gamma rays
each emission converts the unstable isotope into an atom of a different element
the resulting product will give off emissions until it is stable
these are often used to make DNA probes and tracers

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3
Q

Half-life

A

period of time required for half the radioisotopes to decay
every radioisotope has a unique half-life
ratio of isotopes in a sample can be used to date an object (radiometric dating)

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4
Q

Nuclear medicine

A

radioisotopes are used to diagnose or treat disease

these radioisotopes must have a very short half-life so that they aren’t radioactive for too long

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5
Q

PET scanning

A

positron emission tomography
positrons are antimatter electrons
when positrons and electrons come in contact, they produce a gamma ray
a patient will drink a solution of positron emitting glucose, which is then absorbed and carried by the blood to tissues
the PET scanner can then detect the position of gamma ray formation (active = coloured, dead = dark)

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6
Q

Hyperthyroidism therapy

A

a disease where the thyroid produces too much thyroxine, raising the metabolic rate
iodine-131 is absorbed by the thyroid gland, killing some of the tissue and reducing thyroxine production
very few side effects

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7
Q

Chemical bonding

A

electronegativity is the tendency of an element to attract valence electrons
EN increases across a row, as number of protons increases
EN increases up a column, as number of valence shells decreases
the difference in EN determines the type of bonding

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8
Q

Ionic bonding

A

non-metal atoms take valence electrons from metal atoms, forming ions
the ions are held together as crystals
they do not have a molecular formula, but a formula unit

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9
Q

Polar covalent bonding

A

atoms of different non-metals share pairs of valence electrons
the higher EN atoms unequally share electrons with lower EN atoms
the uneven distribution leads to polar molecules, unless there is 3D symmetry

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10
Q

Covalent bonding

A

when non-metal atoms have similar EN, they share pairs of valence electrons equally
this leads to non-polar molecules

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11
Q

London dispersion forces

A

spontaneous temporary induced dipoles
occurs when the electron cloud temporarily shifts to one side of a molecules
these attractions become more important for massive or longer molecules
as carbon chains increase, and the number of electrons increase, it is more likely to becomes liquid or solid

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12
Q

Dipole-dipole forces

A

weak attractions between permanent dipoles
polar molecules have uneven electron sharing and lack symmetry
neutral overall, but there is a slightly negative end, and a slightly positive end
these charged ends attract the oppositely charged ends of the surrounding molecules

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13
Q

Hydrogen bonding

A

strong examples of dipole-dipole forces that occur between HF, HO, or HN of an adjacent polar molecule
they are important since they give water many of its interesting properties and hold some proteins into their characteristic shape

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14
Q

pH scale

A

ranges from 0 - 14
7 is neutral
anything less than 7 is acidic, anything more is basic
it is a logarithmic scale, so each consecutive pH unit is a 10x increase or decrease in acidity

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15
Q

Acids

A

increase the hydrogen ion or hydronium ion concentration in water
strong acids
all molecules ionize in water
most common examples are HCl, HNO3, H2SO4
weak acids
few molecules ionize in water, and the reaction is reversible
common examples are H3PO4, CH3COOH

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16
Q

Concentrated vs. dilute

A

concentrated acids have more acid molecules relative to water molecules
dilute acids have fewer acid molecules relative to water molecules
strength is not the same as concentration

17
Q

Bases

A

bases increase the hydroxide ion concentration in water
inorganic bases
eg. NaOH
ionize, releasing hydroxides
organic bases
have an amino group with an unshared pair of electrons
they accept a proton from water, leaving hydroxide behind
reversible reactions

18
Q

Equilibria

A

the reactions of weak acids or organic bases with water are reversible and occur in both directions simultaneously
equilibrium is reached when the rates of the forward and reverse reaction are equal

19
Q

Conjugate acid-base pairs

A

the ionized form of a weak acid is a base

every acid-base equilibrium consists of two conjugate acid-base pairs

20
Q

Neutralization reactions

A

an acid and a base react forming a salt and water

21
Q

Buffers

A

solutions of weak acids and their conjugate bases
when protons are added or removed, the equilibrium shifts to offset the stress
buffers are extremely important in our bodies to maintain the pH of cytoplasm and extracellular fluid
changes in pH denature enzymes

22
Q

Carbon

A

carbon forms covalent bonds with up to 4 other atoms, so it can form long chains or rings with numerous sites for branching or functional groups
carbon skeletons vary in length
use prefixes meth, eth, prop, but, pent

23
Q

Isomers

A

structural isomers = variation in covalent arrangement
geometric isomers = variation in arrangement across a double bond
cis = boat, produced by plants and chemists
trans = opposites, produced by chemists
stereoisomers = molecules that are mirror images and cannot be superimposed

24
Q

Functional groups

A
hydroxyl
compound = alcohol
functional group = OH
carbonyl
compound = aldehydes or ketones
functional group = C double bonded to O
carboxyl
compound = carboxylic acids
functional group = C double bonded to O, and bonded to OH
amino
compound = amines
functional group = NH2
phosphate
compound = phosphates
functional group = forms five bonds, double bonded to an O
sulfhydryl
compound = sulphides
functional group = SH
25
Q

Ether linkage

A

alcohol plus an alcohol produce an ether and water
specific case = making a disaccharide
alpha glucose plus alpha glucose produces maltose and water
forward reaction = condensation
reverse reaction = hydrolysis
glycosidic bond = ether linkage between two glucose molecules

26
Q

Glucose

A

alpha glucose = down, down, up, down, starting at carbon 1
cyclohexane where one of the carbons is replaced with an oxygen
four hydroxyls and a methyl attached to a hydroxyl

27
Q

Amide linkage

A

amino plus an alcohol produce an amide and water

specific case = making dipeptides

28
Q

Ester linkage

A

carboxylic acid plus an alcohol produce an ester and water
specific case = making a triglyceride
glycerol plus three alcohols produces a triglyceride and three waters

29
Q

Phosphoester linkage

A

phosphate plus an alcohol produce a phosphoester and water
specific cases
phosphorylation of ADP to ATP in mitochondria or chloroplasts
synthesis of DNA or RNA from nucleotides