Chacron lectures 1-5 Flashcards
what brain areas are for motivation?
amygdala and hypothalamus
what is the basal ganglia involved in?
motor action
what brain area is for 3D coordination?
posterior parietal cortex
what is rostral vs caudal
rostral is towards the nose, caudal is towards the back of the brain
what is the brainstem made of?
midbrain, pons, medulla
name the major division of the central nervous system from dorsal to ventral
cerebral cortex
diencephalon
brainstem (midbrain, pons, medulla)
cerebellum (caudal to brainstem)
spinal cord
name the primary brain vesicles from most rostral to caudal.
prosencephalon (forebrain), mesencephalon (midbrain), rhombencephalon (hindbrain)
name the secondary brain vesicles of the forebrain
paired telencephalic vesicles, diencephalon, paired optic vesicles
in what secondary brain vesicle do the thalamus and hypothalamus evolve from?
diencephalon
what secondary brain vesicle do the olfactory bulbs emerge from?
telencephalon (telencephalic vesiles / cerebral hemispheres)
what “holes” are encapsulated in the telencephalon and diencephalon respectively?
lateral ventricles and the third ventricle
name 3 white matter structures found in the developed forebrain
corpus callosum, cortical white matter, internal capsule
what structures are found in the developed mesencephalon?
tectum and the tegmentum that contains the cerebral aqueduct
what is another name for the medulla?
myelecephalon
what is another name for the pons and cerebellum? what primary brain vesicle are they located in?
metencephalon, located in the rhombencephalon
name the structures in the hindbrain
metencephalon (pons and cerebellum), myelencephalon (medulla), encapsulate the fourth ventricle
what are the 3 steps of the neural tube development?
- 3 vesicles
- 5 vesicles
- 3 flexures
what are the 3 flexures of the neural tube? from rostral to caudal
cephalic, pontine, cervical flexure
Name 3 signaling molecules(morphogens).
what do they affect?
Shh (sonic hedgehog), BMP (Bone morphogenic proteins), Wnt (protein family).
They affect transcription factors
where are Wnt signaling vs inhibitors found? what genes do they control?
Wnt inhibitors are more rostral, Wnt signaling are more caudal
They control Otx2 and Gbx2 genes
Where are Otx2 vs Gbx2 genes found?
Otx2 rostrally (forebrain and midbrain), Gbx2 caudally (anterior hindbrain)
what are similarity and differences between a rat vs a human brain?
similarity: same overall structure
differences:
- rats don’t have sulcus or gyrus
- they have bigger olfactory bulbs
- no arc in their cerebral hemispheres
- different brainstem orientation
name the cerebral hemispheres
frontal, parietal, temporal, occipital
what is called the gyrus surrounding the corpus callosum?
cingulate gyrus
name the 3 sulci of the brain
central, lateral, cingulate
what does golgi stain for?
grey matter (cell bodies)
what does Weigert stain for?
white matter (axons)
name the 6 layers of the neocortex
1: molecular layer
2: external granule layer
3: external pyramidal layer
4: internal granule layer
5: internal pyramidal layer
6: multiform layer
what layer is largest in the primary visual cortex? why?
layer IV (4) because it receives input from thalamus
what layer of the PVC do feedback projections to the thalamus come from?
layer VI (6)
in the PVC, what are layer IV inputs and projections?
- monocular inputs from thalamus (dLGN)
- binocular projections to layers III and IVb of the visual cortex
where do layers II, III, and IVb in the PVC project to?
to other layers and areas of the visual cortex
in the PVC, where does layer V project to and what does it control?
project to pons and superior colliculus to control visually guided voluntary movements(subcortical areas)
in the PVC, where does layer VI project to?
it projects BACK to dLGN of the thalamus
what layer is largest in the primary motor cortex?
layer V (5) because it sends output info to subcortical structures including basal ganglia
as a general rule in the neocortex, where do ascending vs descending projections originate from / project to?
- ascending originate in layers II and III and project to layer IV
- descending projection originate in deep layers V, VI and project back to layers I, II, VI
what are chandelier cells?
inhibitory interneurons that terminate on axons of layer II and III pyramidal cells (prevents AP transmission)
what are basket cells?
inhibitory interneurons that terminate on cell bodies (soma) of pyramidal cells (prevents AP firing)
what are neurogliaform cells? what layer do they act in?
inhibitory interneurons that create axosomatic synapses on spiny non-pyramidal neurons of layer IV
describe ascending projection in visual cortex
V1 layer II & III -> V2/V3 layer IV
describe descending projection in visual cortex
V2/V3 layer V, VI -> V1 layers I, II, III
name the 3 main structures in the cerebral cortex
- Basal Ganglia
- Hippocampus
- Amygdala
how are structures in cerebral cortex (ex BG, hippocampus, amygdala) organized?
in nuclei instead of in layers
describe fast-spiking vs regular spiking neurons. give example for each.
fast spiking = short AP, high discharge rate (putative interneurons)
regular spiking = large AP (pyramidal neurons)
where do skin sensory receptor neurons relay information to?
to the dorsal column via the dorsal horn
where does the thalamus project to?
primary sensory cortical areas
name 3 thalamus nuclei and the system they are involved in?
lateral geniculate nucleus (visual)
medial geniculate nucleus (auditory)
ventral posterior lateral (vestibular)
name a thalamic subnuclei involved in motor control
ventrolateral nuclei
what do thalamic 2nd order sensory areas do?
change how primary nuclei respond to peripheral info (ex pulvinar nuclei)
how do peripheral vs central sensory neurons respond to stimulus?
peripheral: respond to most stimuli differently (dense code)
central: respond to specific stimuli (sparse code)
describe dense vs sparse code
Dense: all the neurons respond differentially
Sparse: only a small fraction of neurons respond respond to any given stimulus (metabolically more efficient)
what does information processing depend a LOT on?
context! and internal brain state
projection neurons respond to most stimuli, but is it in a random way?
not random, they all respond in different ways
what kind of activity can projection/peripheral neurons (like PN1 neurons in the example) show?
spontaneous activity
what is special about olfactory sensory pathway?
it goes straight from the olfactory bulb neurons to the anterior piriform cortex; doesn’t go through the thalamus
how do neurons in mouse anterior piriform cortex APC fire?
sparse coding: they fire to specific cells only (look at slide 12)
definition of feature invariance. explain
Neural representations become invariant to identity preserving transformations of behaviorally relevant stimulus features (neurons respond to object no matter the size, position, color)
give an example of how neurons can have selectivity (as opposed to invariance). what coding do they use?where can we find selective neurons?
they will only respond to a specific model of car of a specific color. they apply the “AND” operation. they are sparse coding.
- found in V4
what is the mcgurk effect?
auditory-visual illusion that illustrates how perceivers merge information for speech sounds across the senses (how brain integrates different stimuli)
the McGurk effect is the perfect example of what brain area working?
Multimodal cortex putting together multimodal information
where do the thalamus subnuclei project to?
to different unimodal (primary) cortex areas for each sense
explain the general sequence of cortical processing for the somatosensory system after the thalamus
- primary somatosensory (unimodal) cortex
- unimodal association cortices
- multimodal association cortices
simply describe the pathway for voluntary motor control?
corticospinal pathway: layer 5 (V) motor cortex neurons synapse on interneurons in the VENTRAL horn of the spinal cord. hose neurons cross the spinal cord at the medulla-spinal cordjunction
what other brain areas other than motor cortex send descending information for voluntary movement? (6)
thalamus, midbrain, red nucleus, pons, cerebellum, amygdala
what brain areas are involved in ascending pathways of voluntary control?
cerebellum, deep cerebellar nuclei, red nucleus, midbrain, thalamus ventrolateral nucleus, basal ganglia,
where is the extrapersonal space map located in the brain?
posterior parietal cortex
what is caused by lesions in posterior parietal cortex (extrapersonal map) (4)
visual neglect, personal neglect in reference to body, representational neglect, optic ataxia
what is optic ataxia?
difficulties reaching/grabbing objects in extrapersonal space
what regions did they identify to be involved in planning and control of voluntary movement via single unit (neurophysiological) recording?
parietal cortex regions MIP, VIP, LIP, DP (SPATIAL INFORMATION PROCESSING)
describe dorsal vs ventral stream
dorsal /parietal stream: for spatial information (where); projects to frontal association areas
ventral/temporal stream: for emotional significance (what); projects to ventral frontal cortex
- both go from back to front
what are frontal association areas involved in?
controlling motor functions that require spatial information
what are ventral regions of frontal cortex involved in?
identifying and assigning emotional significance to objects
what is object centered visual neglect?
only the side of the object opposit to the side of the lesion is neglected
someone with a unilateral lesion to the right posterior parietal cortex will be able to draw which side of an image properly?
he can draw the right side
visual neglect for objects due to a lesion is linked to the dorsal or ventral visual pathway?
dorsal visual pathway
what did damage to the right posterior parietal cortex cause related to landmarks?
patient could only recall landmarks to their right (not the landmarks on the opposite side of lesion)
what is personal neglect caused by right posterior parietal cortex lesions?
patient can only draw a self portrait of the right side of their face (can’t draw the side opposite to lesion)
more specifically what region of the parietal cortex is affect in people with optic ataxia?
posterior (in ex, it was dorsomedial) parietal cortex, where extrapersonal space is represented
what did lesions of parietal cortex in monkeys cause?
spatial motor and spatial perceptual deficits comparable to those in human, and difficulty directing eye movements towards objects in opposite hemispace
what are VIP, MIP, LIP, AIP regions of parietal cortex involved in?
transforming sensory inputs to motor outputs
single unit recordings of LIP neuron showed what?
Retinal Centered Coding of Visual Target, but attention specific
what is declarative/explicit memory? what brain areas are involved?
facts/events
hippocampus-medial, temporal lobe, diencephalon
what are the 4 types of nondeclarative/implicit memory? what brains areas are involved?
- skills/habits: Striatum (BG), motorcortex, cerebellum
- priming: neocortex
- basic associative learning: emotional response (amygdala) and skeletal musculature (cerebellum)
- nonassociative learning: reflex pathways
what is associative vs non-associative learning?
basic associative learning:
- emotional response: amygdala
- skeletal musculature: cerebellum
non-associative learning: reflex pathways
what surrounds the hippocampus?
perirhinal cortex, entorhinal cortex, parahippocampal cortex
what are the regions of the hippocampus and what links them? what cell types do they have?
dentate gyrus (granule cells) - mossy fiber connections -> Ca3 (pyramidal) - Schaffer collaterals -> CA1 (pyramidal) -> subiculum
what do lesions of the right vs left hippocampus affect?
right = spatial memory
left = words, objects people
what is special about taxi driver’s brain?
they have a bigger posterior hippocampus and a smaller anterior hippocampus than average
what process in the hippocampus is thought to underly the formation of new memories?
neurogenesis