Ch.2 aqueous chemistry Flashcards

1
Q

Water shape and bond type

A

-Water forms covalent bonds, H bonds, and has a tetrahedral shape.
-The central oxygen atom forms covalent bonds with the two hydrogen atoms thus leaving a pair of unshared electrons on the oxygen.

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2
Q

Water and polarity

A

-Water is polar due to the difference in electronegativity between oxygen and hydrogen. (i.e. uneven distribution of charge) Water also forms a dipole between oxygen and hydrogen.
- Water also dissolves polar solvents

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3
Q

H bonding in H2O

A

-Water forms four hydrogen bonds because it has two hydrogens atoms to donate to a hydrogen bond and two unpaired electrons to accept a bond.
- This is considered an electrostatic interaction
-

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4
Q

Structure of ice and H bonds

A
  • In ice, which is a solid crystalline structure of water, each water molecule forms hydrogen bonds with four other water molecules. (I.E acting as a donor for two h bonds and an acceptor of two h bonds)
    -Once the ice melts this structure begins to break down.
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5
Q

H bonding and liquid water

A
  • Water forms H-bonds with up to four other water molecules, but each bond has a lifetime of 10-12.
  • Due to water’s ability to form H bonds, it is highly cohesive allowing for it to have high surface tension. (i.e. insects walking on water)
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6
Q

H bonds and other molecules

A

-Hydrogen bonding can form not only between water but also with other compounds that bear N and O functional groups.
-This is due to N-H and O-H being hydrogen donors and the electronegative N, O and sometimes S atoms acting as hydrogen acceptors.
- Hydroxyl groups (O-H) and Amine groups (N-H) (functional groups)

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7
Q

H- bonds and DNA

A
  • H bonds make DNA a Stable molecule this is because the complementarity bases of DNA are determined by their ability to form h bonds with each other.
    I.e. in Cytosine and Guanine 3 N-H groups are H bond donors and N-O atoms are acceptors.
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8
Q

Van Der Waals Interactions

A

-are electrostatic interactions and are usually weaker than hydrogen bonds.
- Van der waals interactions and hydrogen bonding are individually weak molecules that contain multiple groups that are capable of participating in intermolecular interaction

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9
Q

Dipole- Dipole interactions

A
  • is the interaction between two strongly polar groups (induced dipoles ) and has the strength of about 9 kj/mol
  • considered weak interactions
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10
Q

London dispersion forces

A
  • weak interactions that occur between nonpolar molecules as a result of small fluctuations in their distribution of electrons that create a temporary separation of charge i.e methyl groups
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11
Q

Dielectric constant and water

A
  • Dielectric constant is a measure of a solvents ability to diminish the electrostatic attractions between dissolved ions. The higher the Dielectric constant of the solvent the less the ions are able to associate with each other
  • Water dissolves many compounds i.e ionic due to its high dielectric constant.
    -ionic compounds i.e Nacl which water surround the ions and align their partial charges with the oppositely charged ions.
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12
Q

Water and glucose

A

-Water dissolves polar compounds such as glucose because multiple h bonds can be formed.
- Glucose has six h bonding oxygens and is considered to be highly soluble

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13
Q

What happens when oil and water mix

A
  • A nonpolar molecule is hydrated by water and the system loses entropy
  • The loss of entropy presents a thermodynamic barrier to the hydration of a non polar molecule. (i.e a layer of constrained water molecules)
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14
Q

The hydrophobic effect

A
  • is the phenomenon by which nonpolar molecules aggregate to avoid contact with water. ( i.e. the exclusion of non polar substances from an aqeous solution)
  • When adding more nonpolar molecules they tend to aggregate and the entropy of the system increases.
  • The hydrophobic effect governs the functions of many biological molecules and structures.
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15
Q

Hydrophillic interactions

A
  • water-loving, glucose and lipids along with other hydrating substances are considered hydrophilic
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16
Q

Fatty acids

A
  • fatty acids such as lipids are considered to experience both hydrophilic interactions and hydrophobic effects.
  • The hydrocarbon “tail”
17
Q

Amphiphilic/ amphipatic molecules

A
  • Having both nonpolar and polar regions and both being hydrophilic(water-loving) and hydrophobic( water fearing)
    -Most lipids are considered to be amphilic or amphipatic
18
Q

Amphiphilic molecules and water

A
  • When amphiphilic molecules are added to water the polar groups of the amphiphiles orient themselves towards the solvent molecules and are hydrated while the non polar molecules are aggregated by the hydrophobic effect.
  • In water amphiphilic molecules can form spherical micelles.
19
Q

Micelles

A
  • Are a particle with a solvated surface and hydrophobic core.
  • Depending on relative sizes of the hydrophilic and hydrophovic portions of amphiphiles, the molecules may form a sheet(lipid bilayer) micelle rather than spherical one
20
Q

Lipid Bilayers

A
  • The amphiphilic lipid molecules form two layers so that their polar head groups are exposed to the solvent while their hydrophobic tails are sequestered away from the water in the interior bilayer
21
Q

Why the core of the lipid bilayer is a barrier to diffusion?

A

-A lipid bilayer tends to close up to form a vesicle, when the vesicle forms it traps a volume of the aqueous solution. The polar solutees in the enclosed compartment ten to remain there because they cannot easily pass through the hydrophobic interior of the bilayer.
-This is due to the energentic cost of transferring a hydrated polar group through the nonpolar lipid tails are too great.
- Small neutral/nonpolar molecules like O2, Co2,N and H2O can pass through the bilayer(cell membrane) easily.

22
Q

A bilayer prevents the diffusion of polar substances

A
  • due to solutes spontaneously diffusing from a region of higher concentration to a region of lower concentration.
  • In a lipid barrier which presents a thermodynamic barrier to the passage of polar substances prevents the diffusion of polar substances out of the polar substances out of the inner compartment and also prevents diffusion of polar substances from the external solution.
  • this is why cells which are enclosed by a membrane maintain their specific concentation
23
Q

The ionic composition of intracellular fluid and extracellular fluid

A
  • Human cells contain a higher concentration of potassium than of sodium or chloride. The fluid outside of the cell is the opposite. the cell membrane helps mantain the concentration differences.
24
Q

Ionization of water equation

A

2H2O —-> (<—–) H3O+ + OH-
-Ionization of 2 water molecules produces the hydronium and hydroxide ions/
- Water ionizes to a very small extent.

25
Q

Dissociation constant K

A
  • Keq =[H+][OH-]/[H2O]
26
Q

Kw

A

Kw is the ionization constant of water
-Kw=[H+][OH-
-Kw=1.0x10-14M

27
Q

[H+] and [OH-]

A
  • the product of H+ and OH- in any solution must be equal to 10^-14 i.e Kw
  • a hydrogen ion concentration greater than 10-7 is balanced by a hydroxide ion concentration that is less than 10-14
    -[H+]=[OH-]= 10^-7 it is neutral
    -[H+] > 10-7, [OH-]<10^-7 then it is acidic
    -[H+] < 10-7, [OH-]>10^-7 then it is basic
  • remember [H+] and [OH-] are inversely related, when one decreases the other increases, and vice versa.
28
Q

PH

A

-The pH of any solution is described as
pH=long10(1/[H+])=-log10[H+]
- pH of 7 is neutral
-pH < 7 is acidic
-pH > 7 is basic
- the pH of blood is 7.4

29
Q

Relationship between pH and [H+]

A
  • pH is equal to -log[H+], the greater the [H+], the lower the pH.
30
Q

pH can be altered

A
  • The pH of water can be changed by adding a substance like an acid or base
  • Adding an acid increases H+ concentration
  • Adding a base decreases H+ concentration
31
Q

Acids and Bases

A

-Acid is defined by biochemists as a substance that donates a proton and a base as a substance that can accept a proton.

32
Q

Acid’s tendency to ionize

A
  • Acids have different tendencies to ionize and this tendency is indicated by the acid’s ionization equilibrium constant.
    HA—-> H+ + A-
  • Ka=[H+][A-]/[HA], ka is known as the dissociation constant
  • The larger the Ka value, the stronger the acid hence the greater tendency to donate a proton.
33
Q

Pka

A
  • Pka=-logKa
  • The smaller the pka, the stronger the acid due to the larger Ka
34
Q

Henderson-Hasselbalch Equation

A
  • pH=pKa +log ([A-]/[HA])
  • at pH > pKa, A- predominates
  • at pH < pKa, HA predominates
35
Q

Buffers

A
  • are 50/50 mixtures of a weak acid and its conjugate base
  • Are solutions that resist changes in pH when small amounts of acid or base are added
  • Their buffering capacity is most effective at or near the acid pKa.
36
Q

Titration curve of acetic acid

A
  • At the start point of the titration( before the base is added), the acid is present in CH3COOH form. As small amounts of the base are added, the protons dissociate until the midpoint of the titration where pH=Pk i.e CH3COOH=CH3COO-) (CH3COO- is the conjugate base)/ The addition of more base causes more protons to dissociate until nearly all the range of acetic acid.