Ch. 14 Molecular Genetic Analysis And Biotechnology Flashcards

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1
Q

Recombinant DNA technology

A

set of molecular techniques for locating, isolating, altering, and studying DNA segment. RECOMBINANT means combine DNA from two distinct sources.

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2
Q

restriction enzymes (restriction endonucleases

A

recognize and make double-stranded cuts in DNA at specific nucleotide sequences. these enzymes are produced naturally by bacteria and are used in defense against viruses.

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3
Q

cohesive ends

A

“sticky ends” they are complementary to each other and can spontaneously pair to connect fragments. a lot of restriction enzymes produce sticky ends.

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4
Q

engineered nucleases

A

genetically engineered more complex restriction enzymes. capable of making double stranded cuts to the DNA at any predetermined DNA sequence.

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5
Q

CRISPR RNAs

A

developed genome manipulation technique uses these. small RNAs found in bacteria and archaea. couple with nucleases that cut dna.

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6
Q

gel electrophoresis

A

separate DNA molecules bases on size and elecrtrical charge. uses porous gele agarose.

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7
Q

cloning vector

A

stable replicating DNA molecule into which a foreign DNA fragment can be inserted for introduction into a cell.

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8
Q

plasmid

A

typically a small circular DNA strand in the cytoplasm of a bacterium or protozoan. Plasmids are much used in the laboratory manipulation of genes.

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9
Q

Cosmids

A

plasmids that are packaged into empty viral protein coats and transferred to bacteria by viral infection. carry more than twice as much foreign DNA as can a phage vector.

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10
Q

Bacterial artificial chromosomes (BACs)

A

vectors originally constructed from the F plasmid. can hold very large fragments of DNA that can be as long as 300,000 bp.

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11
Q

expression vector

A

a foreign gene is typically inserted into an EXPRESSION VECTOR: which, in addition to the usual origin of replication unique restriction sites and selectable markers contains sequences required for transcription and translation in bacterial cells.

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12
Q

Polymerase chain reaction (PCR)

A
  1. Kary Mullis. allows DNA fragments to be amplified a billionfold in just a few hours.
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13
Q

How to carry out PCR

A

solution that includes target DNA, DNA polymerase, all four deoxyribonucleoside triphosphates (dNTPs - ste substrates for DNA polymerase) primers, and mg ions and other salts necessary for reaction to proceed. Taq polymerase can be used due to withstanding high temperatures.

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14
Q

DNA sequencing

A

A powerful molecular method for analyzing dna is a technique. determines the sequence of bases in dna.

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15
Q

ddNTP

A

in the sanger method a special nucleotide called dideoxyribonucleoside triphosphate is also used as a substrate. ddNTPs are incorporated into growing DNA strand. no more nucleotides can be added, thus they terminate DNA synthesis. LACK 3’ OH group.

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16
Q

dNTP

A

deoxyribonucleoside triphosphate - DNA is synthesized from dntp which have OH group on 3’ carbon.

17
Q

next-generation sequencing technologies
what is it?
3 types ?

A

have made sequencing hundreds of times faster and less expensive than the traditional sanger sequencing method.

Pyrosequencing
Illumina sequencing
third generation sequencing

18
Q

Pyrosequencing

A

a next gen sequencing technique based on DNA synthesis: nucleotides are added one at a time in the order specified by template DNA. addition of particular nucleotide is detected with FLASH of light which is generated as the nucleotide is added

19
Q

Illumina sequencing

A

special nucleotides used have fluorescent tag attached with different colored tag for each type of nucleotide. each has chemical group terminator that once incorporated into the DNA chain prevents the incorporation of any additional nucleotides.

20
Q

Third generation sequencing technology

A

most advanced. rapid. certain can determine sequence of a single molecule of DNA. single strand DNA passed through nanopore in membrane.

21
Q

DNA fingerprinting

A

DNA profiling. indentifies individual persons.

22
Q

Microsatellites
OR
short tandem repeats (STRs)

A

very short DNA sequences repeated in tandem. found at many loci through human genome. typically detected with PCR using primers flanking the repeats.

23
Q

forward genetics

A

study mutant then study gene that encodes the mutation

24
Q

reverse genetics

A

begin with gene, induce mutations then look to see what effect shows on phenotype.

25
Q

transgene

A

the foreign DNA that carries the “transgenic” organism that has been permanently altered by the addition of a DNA sequence to its genome.

26
Q

knockout mice

A

helpful in determining the function of a gene: the phenotype of the knockout mouse often gives a good indication of the function of the missing gene. mice whose normal gene has been fully disabled.

27
Q

Knock in mice.

A

mice that carry inserted sequences at specific locations.

28
Q

gene therapy

A

the direct transfer of genes into humans to treat disease. used to treat genetic diseases, cancer, and infectious diseases.