Cells as Functional Units Flashcards

1
Q

What are polynucleotides?

A

Polymerised from Purines and Pyrimidines. They can directly guide the formation of exact copies of their own sequence (base pairing of DNA).

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2
Q

What is the plasma membrane?

A

A lipid bilayer with proteins and molecules embedded in it which is selectively permeable, and maintains homeostasis, aids in binding and adhering, and is important for communication with the outside environment.

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3
Q

What dos the cell theory state?

A
  1. Cells are the fundamental units of life.
  2. All living organisms are composed of cells.
  3. All cells come from pre-existing cells.
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4
Q

What was the first cell observation?

A

Robert Hooke discovered dead cell walls of plant cells under a microscope.
Anton van Leeuwenhoek observed the first live cell under a microscope.

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5
Q

What size of things is a microscope used to see?

A

Objects smaller than 0.2mm (200um) for light microscopes. Electron microscopes can see objects smaller than 0.1mm.

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6
Q

What is cell size limited by?

A

The surface area-to-volume ratio. The volume of a cell determined how much chemical activity it can carry out, and the surface area of a cell determines the amount of a substance it can take in and how much waste it can release.

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7
Q

What is resolution?

A

The minimum distance two objects can be apart and still be seen as two objects. Around 0.2mm for the human eye.

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8
Q

What is the difference between Prokaryotic and Eukaryotic cells?

A

Prokaryotic - Archaea and bacteria. No nucleus or membrane-bound compartments, lack distinct organelles.

Eukaryotic - Have a membrane-enclosed nucleus and other compartments and organelles.

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9
Q

What type of cells have cell walls and what are they for?

A

Some prokaryotic cells. They are located outside the plasma membrane and maintain shape.

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10
Q

What is peptidoglycan?

A

Sugars and amino acids which is what bacteria cell walls are usually composed of. Some bacteria have an outer layer of lipopolysaccharide and protein which encloses the peptidoglycan layer.

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11
Q

What is mycoplasma bacteria?

A

Bacteria that lack a cell wall making them unaffected by antibiotics. Some are pathogenic to humans.

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12
Q

What are cyanobacteria?

A

They have a complex and highly organised system of internal membranes with which to carry out photosynthesis.

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13
Q

What is flagella?

A

Locomotory structures found in some prokaryotic cells which are shaped like corkscrews to help them swim.

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14
Q

What is pili?

A

Structures which help the bacteria to adhere (stick) to one another during exchange of genetic material and to animal cells for protection or food.

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15
Q

What are the three shapes of prokaryotic cells?

A

Rod shaped, Spherical, Spiral shaped.

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16
Q

What are inclusions?

A

Deposits found within the cytoplasms which act as storage for lipids, starch, glycogen etc.

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17
Q

What are the main functions of the nucleus?

A

Contains most of the cells DNA, the site of DNA replication and first steps of decoding it for protein production takes place in the nucleus. Also the site where gene transcription is turned on or off.

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18
Q

What does the rough endoplasmic reticulum do?

A

It segregates newly synthesised proteins away from the cytoplasm and transports them to other areas of the cells. The proteins can be chemically modified to alter their function/destination.

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19
Q

What does the smooth endoplasmic reticulum do?

A

Responsible for chemical modification of small molecules taken into the cell. Site of hydrolysis of glycogen in animal cells and the site of synthesis of lipids and steroids.

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20
Q

Where can ribosomes be found in eukaryotic cells?

A
  1. The cytoplasm either freely or attached to the endoplasmic reticulum.
  2. The mitochondria and chloroplasts.
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21
Q

What is the function of the Golgi apparatus?

A

To further modify, concentrate and package proteins before they are sent to their final destination. Also site of synthesis of polysaccharides of plant cell walls.

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22
Q

What are lysosomes/what is their function?

A

Vesicles containing digestive enzymes that originate from the Golgi. Site for breakdown for food/foreign material brought into the cell by phagocytosis, also site of autophagy.

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23
Q

What is autophagy?

A

The process of organelles such as mitochondria being engulfed by lysosomes and hydrolysed into their monomers to be reused.

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24
Q

What are mitochondria?

A

Site of cellular respiration, energy stores in the bonds of CHO’s and fatty acids is converted to ATP by ATP synthase in the inner membrane.

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25
Q

What are plastids?

A

Organelles which are only found in plants and some protists. An example is a chloroplast.

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26
Q

What are chloroplasts?

A

Type of plastid found in some cells of plants and protists. Site of photosynthesis.

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27
Q

What are the functions of vacuoles?

A

Storage, structure, reproduction, digestion.

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28
Q

How do prokaryotes divide?

A

Fission. Most have one circular chromosome. As DNA replicates each of the 2 resulting strands attach to the plasma membrane and as the cell grows a new plasma membrane is added between the attachment sites and the DNA molecules are moved apart. Cytokinesis then separates the cell in 2 each with a complete chromosome.

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29
Q

What is a centromere?

A

The constriction point of a chromosome which divides the chromosome into two sections/arms - the short arm called the ‘p’ arm, and the long arm called the ‘q’ arm. The location of the centromere gives the chromosome its characteristic shape and helps describe the location of specific genes.

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30
Q

How is DNA packaged into chromosomes?

A

Histones compact he chromosomal DNA resulting in a DNA-protein complex called chromatin. Proteins are added to DNA to make it more compact. However, this coiling requires work and energy which is provided by the histones.

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31
Q

What are histones?

A

A family of small, positively charged proteins termed H1, H2A, H2B, H3 and H4 .

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32
Q

What is a nucleosome?

A

The basic repeating structural and functional unit of chromatin which contains 9 histones and around 166 base pairs of DNA. Packaging DNA into nucleosomes shortens the fibre length 7 fold, but it is even further coiled into a 30nm fibre.

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33
Q

What is chromatin?

A

The mixture of DNA, histones and other proteins that make up chromosomes. It is divided between heterochromatin (condensed) and euchromatin (extended) forms.

34
Q

What are the functions of chromatin?

A
  1. Packaging DNA into a smaller volume.
  2. Strengthening the DNA to allow mitosis and meiosis.
  3. Control gene expression and DNA replication.
35
Q

What are the 2 mechanisms that make chromatin more accessible for transcription and replication?

A
  1. Histones can be enzymatically modified.
  2. Histones can be displaced by chromatin remodelling complexes.

Both of these processes are reversible.

36
Q

What is the fluid-mosaic model?

A

The bilayered, dynamic structure of the cell membrane which forms boundaries between cells and their environment and regulates the movement of molecules into and out of the cell.

37
Q

What are phospholipids?

A

The lipid molecules that make up the cell membrane. They have hydrophilic heads (phosphate groups) which are on the outside to interact with the aqueous environment, and hydrophobic tails (fatty acids) in the centre to act as a barrier for water-soluble molecules.

38
Q

What are integral membrane proteins?

A

Contain hydrophobic regions of amino acids that penetrate or entirely cross the phospholipid bilayer.

39
Q

What are transmembrane proteins?

A

Have a specific orientation showing different ‘faces’ on each side of the bilayer.

40
Q

What are peripheral membrane proteins?

A

They lack hydrophobic regions so are not embedded in the bilayer.

41
Q

What affects membrane fluidity?

A
  1. Lipid composition - length of chain/saturation/cholesterol levels.
  2. Temperature - Decreases in temperature slow down cellular processes.
42
Q

What are the 2 ways that adhesion molecules work?

A
  1. Homotypic binding (most common) -Both cells possess the same type of cell surface receptor and their interaction causes them to stick together.
  2. Heterotypic binding - Between 2 different, but complementary proteins.
43
Q

What is cell recognition and cell adhesion?

A

Cell recognition - Where one cell recognises and binds to another specific cell.
Cell adhesion - Where the connection between the 2 cells is strengthened.

44
Q

What are glycolipids?

A

A carbohydrate bound lipid.

45
Q

What are glycoproteins?

A

Proteins bonded to CHO’s which enable cells to be recognised by other cells/proteins, allowing cell-cell interactions.

46
Q

What are tight cell junctions?

A

Specialised structures on the plasma membranes that link adjacent epithelial cells. They restrict the migration of membrane proteins and phospholipids from one region of the cell to another, and prevent substances moving through the intracellular space.

47
Q

What are desmosome cell junctions?

A

Hold neighbouring cells firmly together. Materials can still move around in the extracellular matrix. Provides mechanical stability for tissues such as the skin.

48
Q

What are gap cell junctions?

A

Connections/channels that run through pores in adjacent cells, facilitating communication between cells. Made up of specialised protein channels called connexons which are made up of proteins called connexions which snap together to create a pore.

49
Q

What is facilitated diffusion?

A

Where molecules must travel through proteins to get through the cell membrane.

50
Q

What are the 2 types of processes by which substances cross biological membranes?

A
  1. Passive transport. Does not require chemical energy, the energy comes from the concentration gradient. Includes simple diffusion and facilitated diffusion.
  2. Active Transport. Driven by chemical energy (metabolic energy).
51
Q

What is diffusion?

A

The process of random movement toward a state of equilibrium from a state of higher concentration to lower concentration. Diffusion over large distances is slow.

52
Q

In a solution what factors determines diffusion rate?

A
  1. Temperature (higher = faster).
  2. Size and mass of molecules/ions (smaller= faster).
  3. Charge of the molecule.
  4. Density of solution (Higher density = slower).
  5. Concentration gradient (greater gradient = faster).
53
Q

What is osmosis?

A

The diffusion of water across membranes. Completely passive and requires no metabolic energy.

54
Q

Define isotonic, hypertonic and hypotonic solutions.

A

Isotonic - Equal solute concentrations.
Hypertonic - Greater total solute concentration than the solution to what it is being compared to.
Hypotonic - Lower total solute concentration than the solution to what it is being compared to.

55
Q

What are channel proteins?

A

Integral membrane proteins that from channels lined with polar amino acids (the non-polar ones face the outside).

56
Q

What are ion channel;s?

A

The best-studied channel proteins. Most are gated meaning they are closed but open when their specific ion/molecule/ligand binds (ligand-gated). The potassium ion channel is activated by changes in voltage across the membrane (voltage-gated).

57
Q

What is a carrier protein?

A

A protein used for facilitated diffusion. The substance binds to the protein and the protein opens the channel. They allow diffusion both into and out of the cell/organelle.

58
Q

What is active transport?

A

The movement of ions or molecules across the membrane against their concentration gradient. Requires energy (ATP).

59
Q

What are the three types of proteins involved in active transport?

A
  1. Uniporter - Moves a single type of substance in one direction.
  2. Symporter - Moves 2 types of solute in the same direction.
  3. Antiporter - Moves 2 solutes in opposite directions (one into the cell and one out of the cell).
60
Q

What is the sodium-potassium pump?

A

A primary active transport system that is an antiporter. Pumps 3 sodiums out of the cell and 2 potassiums into the cell. Only cations such as sodium, potassium, calcium use primary active transport.

61
Q

What is secondary active transport?

A

Uses ATP indirectly (primary uses it directly through direct hydrolysis of ATP). The energy is supplied by a concentration gradient established by primary active transport. The gradient is used to move a substance by either a symport or anti port system (also known as coupled transporters).

62
Q

What is an example of a secondary active transport system?

A

The glucose symport system found in intestinal cells. The movement of glucose up its concentration gradient is achieved by the movement of sodium ions down its concentration gradient.

63
Q

What do endocytosis processes do and what are the 3 types?

A

Bring macromolecules, large particles, small molecules and even other cells inside the cell. Phagocytosis, pinocytosis and receptor-mediated endocytosis.

64
Q

What is pinocytosis?

A

Uses small vesicles and brings dissolved substances and fluids into the cell. E.g the layer of cells separating capillaries from surroundings use pinocytotic vesicles to take fluids from the blood.

65
Q

What is receptor-mediated endocytosis?

A

Highly specific but similar to pinocytosis. Receptor proteins are exposed on the outside of the cell in regions called coated pits (Cathrin molecules form the coat of the pits). The cell takes in specific materials.

66
Q

What is exocytosis?

A

The process by which materials packaged in vesicles of a cell are secreted out of the cell when the vesicle membrane fuses with the cell membrane.

67
Q

What do microtubules do/how are they formed ?

A

Polar structures which is important for their biological function. They provide a rigid intracellular skeleton for some cells and function as tracks that some motor proteins can move along in the cell. Formed from polymerisation of tubular monomers. The plus end is capable of rapid growth and the minus end tends to lose subunits if not stabilised by embedding in the centrosome.

68
Q

What is the centrosome?

A

An organelle which serves as the main microtubule organising centre (MTOC) in animal cells. Often has a key role in mitosis. Several hundred microtubules grow outward from the centrosome at any given time.

69
Q

What do motor proteins do and what are the 2 types?

A

Use the microtubule network as a scaffold to position organelles. Energy from ATP hydrolysis allows them to move along microtubules or actin filaments. 2 types are Kinesins (move towards plus end (cell edge)) and Dyneins (move towards minus end (centrosome)).

70
Q

What membrane bound organelles have receptors for kinesins and dyneins?

A

Kinesins - Endoplasmic reticulum.

Dyne’s - Golgi

71
Q

What are the functions of motor proteins kinesin?

A
  • Organelle movement.
  • Transport of RNA’s and proteins.
  • Assembly of cilia/flagella.
  • Signalling pathways.
  • Mitotic spindle formation and chromosome movement.
72
Q

What are the 2 types of motor protein Dynein?

A
  1. Cytoplasmic

2. Ciliary

73
Q

What array are the microtubules in cilia and flagella arranged in?

A

9 + 2

74
Q

What are microfilaments made of and what are their functions?

A

They are made of the protein actin and can exist as single filaments, bundles or networks.
Functions are:
- Determine and stabilise cell shape.
- Help the entire cell or parts of the cell to move.
- Involved in cytoplasmic streaming and the formation of pseudopodia.

75
Q

What is fish keratocytes?

A

Non-pigmented cells found in fish scales that migrate rapidly in culture. Intermediate filaments and microtubules only present in trailing edge of cells around the nucleus, the leading edge is rich in actin, depolarisation of microtubules has no impact on cell migration and interference with actin halts cel migration.

76
Q

What is myosin and what does it do?

A

A motor protein distinct from kinesins and dyneins. It moves along actin and it a major component of the contractile mechanism. All myosin have similar motor units but different adapter domains which allow them to bind to cell components.

77
Q

Describe the polarisation mechanism of cytoxic T cells.

A
  1. Plasma membrane senses a difference in one side of the cell.
  2. A transmembrane signal is generated.
  3. Actin cortex is reorganised in a localised area beneath the affected membrane.
  4. Centrosome moves to that area.
  5. Centrosome repositions internal membrane systems.
  6. This results in the cell have strong directional focus.
78
Q

What are cytoxic T cells and what do they do?

A

Cells of the immune system which kill infected host cells. Proteins on the infected cells surface are recognised by TCR which sends signal to underlying cortex of T cell altering the cytoskeleton.

79
Q

How is the cytoskeleton altered after receiving a signal from TCR.

A
  • Proteins associated with actin filaments reorganise under the zone of contact.
  • The centrosome reorients moving with its microtubules to the zone of contact.
  • The microtubules position the Golgi directly under the zone of contact.
  • This focusses the killing machinery directly at the target cell.
80
Q

What are intermediate filaments and what do they do?

A

Tough- rope-like structures which are prominent in cells subject to mechanical stress. Intermediate in size between actin and myosin (also actin and microtubules). They stabilise the cell structure and resist tension, and in some cells, maintain the positions of the nucleus and other organelles.