Cell signalling - Week 22 & 23 Flashcards

You may prefer our related Brainscape-certified flashcards:
1
Q

what is signaling and signal transduction meaning

A

Signaling and signal transduction are interchangeable terms that refer to the complex process by which cells communicate and respond to stimuli. It involves molecular events triggered by binding of signaling molecules to receptors, leading to cellular responses.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

what is signal transduction

A

Signal transduction is the process by which an extracellular signal, such as a hormone, neurotransmitter, or growth factor, is converted into an intracellular signal inside a cell. This conversion typically involves a cascade of molecular events, including receptor activation, intracellular signaling molecule activation, and ultimately leading to a cellular response.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

what is the pathway of cellular signal transduction sequence occur in

A

STIMULI –>SENSOR–> SIGNAL TRANSDUCTION–> RESPONSE(receptor)

  1. Cells sense environmental signals via receptors.
  2. Receptors trigger intracellular signal transduction pathways.
  3. Signal transduction leads to cellular responses.

This simplified sequence captures the key steps of how cells detect, transmit, and respond to signals, allowing them to adapt and function in response to their environment.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

how are signal in cellular signal transduction regulated and why

A

signals in cellular signal transduction are regulated in both time and space. Cells carefully regulate the timing and location of signal transduction events to ensure precise and coordinated cellular responses.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

what does normal cell signaling play a role in

A

Normal cell signaling plays a critical role in regulating many, if not all, aspects of whole body homeostasis. Cell signaling pathways are involved in coordinating and regulating various physiological processes in the body, including metabolism, growth and development, immune responses, neuronal signaling, hormone regulation, and many others.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

what is a effector

A

a component of a signalling pathway that is activated following engagement of a receptor.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

what is signal transduction pathway meaning

A

the set of molecular events that convert one specific signal into one specific cellular response.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

what is a ligand

A

A molecule coming from a distance that binds to a receptor on the surface or inside a cell, acting as the primary messenger.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

what is a receptor

A

Proteins on the cell surface or inside the cell that bind to specific ligands and transmit the signal to the cell’s interior.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

what are second messengers

A

Intracellular signaling molecules that are produced in response to ligand-receptor binding and transmit the signal further within the cell.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

what are target genes

A

Specific genes in the cell’s DNA that are regulated by the intracellular signals and can be influenced by the second messengers.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

what are some example of ligands

A

Ligands can include a wide range of molecules that can bind to receptors and initiate cellular signal transduction. Some examples of ligands include:
* Growth factors and cytokines
* Hormones
* Cell Adhesion Molecules
* Lipids
* Neurotransmitters

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

what are some examples of different types of receptors

A

some examples of different types of receptors are:
* Receptor tyrosine kinases
* G-protein-coupled receptors
* Nuclear receptors

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

what are some examples of different types of transducers

A

some examples of different types of transducers are:
* Small monomeric GTPases
* Kinases

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

how is mating in yeast cells carried out in 3 steps

A

Yeast sexual mating is regulated by signal transduction,
which involves a series of events that ultimately lead to:
1. the exchange of mating factors
2. mating,
3. the formation of a new a/α cell.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

how do cells communicate to each other

A

Cells have the ability to sense and respond to specific chemical signals in their environment, allowing them to communicate with each other. This communication can occur directly through cell-cell contacts or indirectly through the release of chemical signals into the extracellular environment.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

why is cells being able to communicate with each other crucial

A

In multicellular organisms, this ability to communicate and respond to signals is crucial for achieving coordinated activities among different specialized cells and tissues. It allows for the development, growth, and maintenance of the organism, as well as the regulation of homeostasis.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

what are 2 examples of cell signalling

A

There are different types of cell signaling, including:
1. Endocrine signaling: This type of signaling involves the release of chemical signals, called hormones, into the bloodstream by endocrine glands.
2. Paracrine signaling: This type of signaling involves the release of chemical signals, called local mediators, by cells that act on nearby cells within the same tissue or organ.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

what does cell signalling involve and why

A

cell signaling involves the reception, transduction, amplification, integration, and response to signals, which allows cells to communicate and respond to their environment

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

what can messenger molecules be chemically charaterised by

A

Messenger molecules, also known as signaling molecules or ligands, can be chemically characterized as amino acids (or derivatives), peptides, proteins, fatty acids, nucleosides, or nucleotides

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

where do hydrophilic and hydrophobic messenger molecules usually work/act

A

messenger molecules can be hydrophilic, meaning they dissolve in water, and typically act on receptors on the cell surface. Hydrophobic messengers, on the other hand, are typically not soluble in water and tend to act on receptors located in the nucleus or cytosol of the target cell.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

what is the interaction between the messenger molecule and its receptor known as

A

The interaction between the messenger molecule and its specific receptor is often likened to a “key and lock” mechanism, where the ligand (key) fits into the receptor (lock) to initiate a cellular response.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

what can steroid hormones and retinoids regulate

A

hydrophobic messengers, such as steroid hormones and retinoids can regulate gene transcription, leading to changes in gene expression and subsequent cellular responses.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

how do cell distinguish messengers from other chemicals in the environment

A

The combination of receptor specificity, ligand-receptor interactions, and the positioning of appropriate amino acid side chains in the binding site of the receptor allow cells to distinguish messengers from other chemicals in the environment and ensure high specificity in ligand-receptor interactions, allowing for precise signaling and communication within cells.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
Q

how do ligands bind to their receptors with high specificity

A

Ligands form multiple noncovalent bonds with
their binding site in the receptor

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
26
Q

how does ligand bind to its receptor

A

The binding of a ligand to its receptor is similar to the binding of an enzyme to its substrate. When a receptor binds its ligand, it becomes occupied.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
27
Q

what is the amount of receptos that is occupied proportional to

A

The amount of receptor that is occupied by the ligand is proportional to the concentration of free ligand in solution. As the ligand concentration increases, more receptors become occupied until most of them are occupied, reaching saturation.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
28
Q

what are growth factors and cytokines, where are they involved, with example

A

Peptides/small proteins secreted from cells,
involved in paracrine and autocrine signalling. e.g. Epidermal Growth Factor (EGF)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
29
Q

what are hormones, where are they involved, with example

A

Peptides, amino acids or small molecules (e.g. steroids) involved in endocrine signalling. e.g. Testosterone

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
30
Q

what are cell adhesion molecules involved in, with examples

A

Cell Adhesion Molecules are Involved in direct interaction between cells e.g. Cadherins, or interaction between cells and the extracellular matrix e.g. Integrins

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
31
Q

what are lipids, where are they involved, with example

A

Hydrophobic signalling molecules involved in autocrine and paracrine signalling e.g. prostaglandin

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
32
Q

what are neutransmitters, what do they, with example

A

Small hydrophilic molecules, often derived from amino acidsor nucleotides.
Transmit signals across a synapse e.g. dopamine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
33
Q

How do GPCRs and Kinase Coupled Receptors transmit signals upon ligand binding, and what are the downstream signaling pathways they activate

A

Plasma membrane receptors are diverse and can be classified as G-Protein Coupled Receptors (GPCRs) or Kinase Coupled Receptors. Upon ligand binding, GPCRs activate intracellular G-proteins, while Kinase Coupled Receptors activate kinase activity.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
34
Q

why do downstream signaling pathways of GPCRs and Kinase Coupled Receptors diverge/converge

A

Downstream signaling pathways can diverge or converge which allows cells to integrate and process multiple signals for precise cellular responses. These signaling events play critical roles in cell function and development.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
35
Q

How do RTKs transmit signals upon ligand binding and the role of tyrosine phosphorylation in this process

A

Enzyme-linked receptors, like Receptor Tyrosine Kinases (RTKs), undergo conformational changes and dimerization upon ligand binding, activating their intrinsic kinase activity. This results in phosphorylation of tyrosine residues, which serve as binding sites for other proteins.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
36
Q

what do G-proteins play a role in, and what happens upon ligand binding

A

G-protein-coupled receptors (GPCRs) are plasma membrane receptors that play a crucial role in cellular signaling. Upon ligand binding, GPCRs activate intracellular G-proteins, triggering downstream signaling responses.

37
Q

where are intracellular receptors located

A

Intracellular receptors, like androgen receptor (AR), are located inside the cell.

38
Q

what does ligand binding trigger

A

Ligand binding, such as testosterone, triggers receptor activation and translocation to the nucleus.

39
Q

what complications can occur in ligand-receptor interaction

A

Complications in ligand-receptor interactions include the complexity of the extracellular environment, presence of multiple receptors, and modulation of binding by other proteins/molecules. These factors can influence binding kinetics, specificity, and signaling outcomes, leading to diverse cellular responses.

40
Q

what is receptor down-regulation and how can it occur

A

Receptor down-regulation is a cellular adaptation where cells reduce the number of receptors on their surface in response to prolonged exposure to a ligand, leading to decreased responsiveness. This can occur through internalization of receptors or disruption of receptor coupling to signaling pathways, preventing over-response to prolonged ligand exposure and maintaining cellular homeostasis.

41
Q

how can receptor down-regulation occur and why is it important

A

Receptor down-regulation happen through either:
- removal of receptors from the cell surface via receptor-mediated endocytosis
- alteration of receptor affinity for the ligand through phosphorylation
- modification of the receptor that prevents it from initiating cellular changes.

These mechanisms are important and they help cells adapt to changing ligand concentrations and maintain cellular homeostasis.

42
Q

How do ligand-receptor interactions influence the design of synthetic ligands for receptor binding in pharmaceuticals

A

Ligand-receptor interactions play a crucial role in pharmaceuticals, and synthetic ligands can be designed to bind specifically to receptors without triggering signaling.

43
Q

What are antagonists and agonists in the context of pharmaceuticals, and how do they interact with receptors?

A

Antagonists are pharmaceuticals that inhibit receptors by preventing naturally occurring messengers from binding and activating the receptor. On the other hand, agonists are pharmaceuticals that activate the receptor they bind to.

44
Q

Can you provide examples of agonists and antagonists in the context of pharmaceuticals, and explain how they interact with specific receptors to elicit their effects?

A

Examples:
- isoproterenol is an agonist that activates β-adrenergic receptors and is used to treat asthma and stimulate the heart.
- Propranolol, on the other hand, is an antagonist that inhibits β-adrenergic receptors, reducing blood pressure and the strength of cardiac contractions. - - —-
- Famotidine is another example of an antagonist that inhibits histamine receptors in the stomach, commonly used to treat conditions like acid reflux.

45
Q

How do ligand-receptor interactions trigger signal transduction and regulate cellular responses in intracellular signaling pathways

A

Intracellular signaling involves ligand binding to a receptor, causing receptor activation and changes in cellular activities. This triggers a preprogrammed sequence of events inside the cell, known as signal transduction, which involves various molecular interactions. These pathways regulate cellular responses such as gene expression, protein synthesis, and cell growth.

46
Q

what is signal amplification and how does it attained, with an example

A

Signal amplification is a phenomenon where small quantities of ligand can trigger a dramatic cellular response. This is often achieved through signaling cascades, where each step activates multiple molecules for the next step. An example is the breakdown of glycogen in response to epinephrine.

47
Q

why is signal amplification needed

A

Signal amplification ensures efficient and sensitive cellular responses to external stimuli.

48
Q

How do small GTPases function as molecular switches in intracellular signaling pathways, and what are some examples of small GTPase families?

A

GTPases, also known as guanine nucleotide triphosphatases, act as molecular switches in cellular signaling. Small monomeric GTPases, often referred to as “Small GTPases,” are important examples of this class of proteins. Examples of small GTPase families include Ras, Rho, Rab, Arf, and Ran.

49
Q

How are small GTPases different from heterotrimeric G-proteins

A

Unlike heterotrimeric G-proteins, which are directly activated by GPCRs (G-protein coupled receptors), small GTPases are monomeric and have distinct mechanisms of activation.

50
Q

why are small GTPases modified with lipid groups

A

Many small GTPases are also modified with lipid groups because they help to direct them to specific cellular membranes, where they play important roles in membrane trafficking, vesicular transport, and other cellular processes.

51
Q

how is GTPase localisation regulated, and why is the lipid groups important

A

GTPase localization is regulated by post-translational modifications, where a hydrophobic lipid groups, such as farnesyl or geranylgeranyl, is attached to the GTPase. This lipid group plays a crucial role in targeting the GTPase to specific cellular membranes, such as the golgi membrane or plasma membrane.

52
Q

why do lipid modifications occur

A

lipid modification can facilitate protein interactions, enabling the GTPase to engage with other proteins and participate in signaling pathways or other cellular processes.

53
Q

what are the 3 types of kinases

A

Three types of kinases are:
* Protein kinases
* Lipid kinases
* Carbohydrate kinases

54
Q

through which mechanisms can kinase activation occur

A

Kinase activation can occur through various mechanisms, including:
* Phosphorylation
* Dephosphorylation
* Binding of a ligand/activating protein
* Regulation of localisation

55
Q

what counteracts the actions of kinases

A

Phosphatases counteract the actions of kinases.
Kinases add phosphate groups to proteins, while phosphatases remove phosphate groups.

56
Q

what plays a key role in determining kinases specificity

A

The molecular structure of kinases plays a key role in determining their specificity in phosphorylating target proteins.

57
Q

what are second messengers and what do they do

A

Second messengers are small intracellular molecules that are synthesized or mobilized in response to the activation of a signaling pathway. They amplify and diversify the signal, acting as intermediates in intracellular signaling cascades.

58
Q

what are examples of second messengers

A

Examples of second messengers include:
lipids such as IP3 (inositol trisphosphate) and PIP3 (phosphatidylinositol 3,4,5-trisphosphate),
ions such as calcium and potassium, and
nucleosides such as cAMP (cyclic adenosine monophosphate) and cGMP (cyclic guanosine monophosphate).

59
Q

what are transcription factors, what is their function

A

Transcription factors are proteins that regulate the rate of transcription of target genes. They play a crucial role in gene expression, controlling when and how genes are turned on or off in response to various signals and cues. Transcription factors can either activate or repress the expression of their target genes, and some transcription factors can do both.

60
Q

why do transcription factors bind to specific DNA sequences

A

Transcription factors bind to specific DNA sequences called enhancers or promoters, and either activate or repress the transcription of target genes, thus controlling their expression levels.

61
Q

which mechanisms can regulate transcription factors

A

Transcription factors can be regulated through various mechanisms that can impact their activity and function. Some of the common mechanisms of transcription factor regulation include:
- Altered expression
- Phosphorylation/dephosphorylation
- Binding an activator/ligand/corepressor/co-activator
- Dimerization
- Localisation to the nucleus

62
Q

what are protein kinases, and what are the 2 group types they can categorized into

A

Protein kinases are enzymes that add phosphate groups to proteins, called phosphorylation. They can be categorized into two types:
>Tyrosine Kinases
>Serine/Threonine Kinases

63
Q

what is phosphorylation and what is its function

A

Phosphorylation is a vital posttranslational modification and the most common mechanism for regulating protein function. It plays critical roles in regulating cellular processes such as the cell cycle, growth, apoptosis, and signal transduction pathways.

64
Q

where does phosphorylation occur

A

The most common phosphorylation sites are serine (Ser) and threonine (Thr) residues, followed by tyrosine (Tyr) residues. However, phosphorylation can also occur on other amino acids, such as arginine (Arg), histidine (His), aspartic acid (Asp), cysteine (Cys), glutamic acid (Glu), and lysine (Lys), although these are less common and referred to as non-canonical phosphorylation.

65
Q

what are RTKs, with examples

A

Receptor Tyrosine Kinases (RTKs) are a class of cell surface receptors that play important roles in cellular signaling. They include receptors such as the insulin receptor, nerve growth factor receptor, and epidermal growth factor (EGF) receptor. RTKs are typically composed of a single polypeptide chain with a single transmembrane domain.

66
Q

which region of RTKs is responsible for ligand binding

A

The extracellular region of RTKs is responsible for ligand binding.

67
Q

How do the kinase domain and tyrosine residues in the cytosolic region of receptor tyrosine kinases (RTKs) facilitate cellular signaling through autophosphorylation and protein docking

A

The cytosolic region of RTKs contains a kinase domain that has enzymatic activity to add phosphate groups to tyrosine residues in the receptor itself (autophosphorylation) and in downstream target proteins. The cytosolic tail of RTKs also contains multiple tyrosine residues that serve as docking sites for signaling proteins, allowing for the recruitment of downstream signaling molecules to propagate the signal.

68
Q

how is RTKs activated

A

Activation of Receptor Tyrosine Kinases (RTKs) typically involves the following steps:
1. Ligand binding: Ligand binding causes RTKs to aggregate.
2. Autophosphorylation: The cytosolic kinase domain of RTKs phosphorylates tyrosine residues on its own receptor in a process called autophosphorylation.
3. Transphosphorylation: Autophosphorylation creates docking sites for other signaling proteins, leading to phosphorylation of tyrosine residues on neighboring RTKs, a process called transphosphorylation.
4. Activation of downstream signaling pathways: Autophosphorylation and transphosphorylation trigger activation of downstream signaling pathways, leading to cellular responses to the ligand stimulus.

69
Q

what happens after RTKs are activated

A

Upon activation, Receptor Tyrosine Kinases (RTKs) recruit proteins containing the SH2 (Src Homology 2) domain, which is a structurally conserved protein interaction domain.

70
Q

what was SH2 domain initially identified as

A

The SH2 domain was initially identified in the Src oncoprotein.

71
Q

why does SH2 bind to phosphosphorylated tyrosine kinase residues in target protein

A

The SH2 domain specifically binds to phosphorylated tyrosine residues on target proteins, as it allows for the formation of protein-protein interactions and subsequent activation of downstream signaling pathways.

72
Q

what does recruitment of proteins containing SH2 domains by activated receptoe tyrosine kinases allow

A

Recruitment of proteins containing SH2 domains by activated Receptor Tyrosine Kinases (RTKs) allows for the activation of multiple signaling pathways simultaneously.

73
Q

what are 2 pathways that can be activated by RTKs through SH2 domain-mediated interactions

A

Two well-known pathways that can be activated by RTKs through SH2 domain-mediated interactions are the inositol-phospholipid-calcium pathway and the Ras pathway.

74
Q

how can RTKs activate Ras signalling pathway

A

Receptor Tyrosine Kinases (RTKs) can activate the Ras signaling pathway through the involvement of Ras and its regulators, including Sos (son of sevenless) and GAP (GTPase activating protein).

75
Q

what is Sos and how does it activate Ras

A

Sos is a guanine-nucleotide exchange factor (GEF) that activates Ras by binding to RTKs through GRB2.

76
Q

what is GAP and how does it promote inactivation of Ras

A

GAP is a GTPase activating protein that promotes Ras inactivation by stimulating GTP hydrolysis.

77
Q

what is Ras, and when is it active and inactive

A

Ras is a small G-protein that is active when bound to GTP, and inactive when bound to GDP.

78
Q

what is Ras-Raf-Mek-Erk signalling pathway

A

The Ras-Raf-Mek-Erk signaling pathway is a crucial cellular signaling cascade that regulates various cellular processes.

79
Q

In the Ras-Raf-Mek-Erk pathway, what activates what

A
  • Ras activates Raf (MAP3K)
  • Raf activates Mek (MAP2K)
  • Mek activates Erk (MAPK)
80
Q

what is the function of Erk in Ras-Raf-Mek-Erk pathway

A

the function of Erk is to phosphorylate downstream proteins and thus regulate gene expression and cellular processes.

81
Q

what are GPCRs and how do they activate or inactivate specific G proteins and what do activated G proteins do

A

GPCRs are seven-pass transmembrane proteins that activate specific G proteins when bound to GTP and inactivate them when bound to GDP. Activated G proteins then bind to target proteins such as enzymes or channel proteins.

82
Q

what are examples of GPCRs

A

Examples of GPCRs include olfactory receptors, norepinephrine receptors, hormone receptors, and smoothened receptors.

83
Q

what are the diverse biological functions of GPCRs

A

The diverse biological functions of over 2000 human G protein-coupled receptors (GPCRs) are:
smell, taste, light perception, neurotransmission, endocrine and exocrine gland function, chemotaxis, exocytosis, blood pressure regulation, embryogenesis, development, cell growth and differentiation, viral infection, and oncogenesis.

84
Q

what are the 6 classes can GPCRs be categorised into

A

GPCRs are categorized into 6 classes based on sequence homology and functional similarity:
- Class A (or 1) - Rhodopsin-like
- Class B (or 2) - Secretin receptor family
- Class C (or 3) - Metabotropic glutamate/pheromone
- Class D (or 4) - Fungal mating pheromone receptors
- Class E (or 5) - Cyclic AMP receptors
- Class F (or 6) - Frizzled/Smoothened

85
Q

what are the 2 families of G proteins

A

There are two families of G proteins: heterotrimeric G proteins and small monomeric G proteins. Heterotrimeric G proteins are large proteins consisting of three subunits (Gα, Gβ, and Gγ) and signal through 7-pass transmembrane receptors known as GPCRs.
Small monomeric G proteins are smaller in size and do not require GPCRs for signaling.

86
Q

examples of small monomeric G proteins

A

Examples of small monomeric G proteins include the Ras family and Rho family.

87
Q

what is one of the major outcome of G protein activation

A

One of the major outcomes of G protein activation is the release or formation of second messengers, which are small molecules that transmit signals from the cell membrane to the interior of the cell.

88
Q

what are examples of second messengers

A

Examples of second messengers include:
- lipids (such as inositol trisphosphate or IP3, phosphatidylinositol-3,4,5-trisphosphate or PIP3)
- ions (such as calcium, potassium)
- nucleosides (such as cyclic adenosine monophosphate or cAMP, cyclic guanosine monophosphate or cGMP).