Cell Biology Flashcards
What is a cell always derived from?
Another cell!
What can all life forms be traced back to?
Last Universal Common Ancestor (LUCA), a single-celled organism
What do all Eukaryotes share as an ancestor?
An ancestor that possessed a bacterial endosymbiont that evolved into modern mitochondria
What is a Phylogenetic or genealogic tree?
A tree showing the evolutionary history of a group of organisms. It can be inferred indirectly from nucleotide or amino acid sequence data.
What is the most widely used phylogenetic marker?
The small subunit ribosomal RNA gene (SSU rRNA)
What characterise Eukaryotic cells?
A complex endomembrane, with both endogenous (eg nucleus and RER) and exogenous (eg Mitochondria and Plastids) origins.
What is the exogenous source of Mitochondria?
Alpha-proteobacteria
What is the exogenous source of Chloroplasts?
Cyanobacteria
What is the plasma membrane of a cell?
-It encloses the cell content, separating it from the external environment, and allows for different concentrations of substances to be maintained.
-Allows for communication with environment and other cells.
What its the function of cytosol?
Gives many metabolic pathways and where protein synthesis occurs.
What is the function of the Nucleus?
Contains the main genome, where DNA and RNA synthesis (transcription) occur
What is the function of the endoplasmic reticulum?
Synthesis of most lipids, synthesis of proteins for distribution to many organelles and to the plasma membrane and secretions.
What is the function of the Golgi apparatus?
Modification, sorting, and packaging of proteins and lipids for various organelles, PM or secretion
What is the function of Lysosomes?
Intracellular degradation
What is the function of Endosomes?
Sorting of endocytose (internalised) material
What is the function of Peroxisomes?
Oxidation of toxic molecules
What is the function of the Mitochondria?
Oxidative Phosphorylation and FeS cluster biosynthesis
What are all the lipids in the Plasma membrane?
Ampiphillic, meaning they have a hydrophilic head and hydrophobic tail
In terms of mass of the plasma membrane, what percentage is made up of lipids and what percentage is made up of proteins.
Each are around 50%
What are there four major phospholipids in mammalian plasma membrane?
-Phosphatidylethanolamine
-Phosphatidylserine
-Phosphatidylcholine
-Sphingomyelin
Which Phospholipids in the plasma membrane point outwards?
Phosphatidylcholine and Sphingomyelin
Which Phospholipids in the plasma membrane point inwards?
Phosphatidylethanolamine and Phosphatidylserine
What are glycolipids and what are they important for?
Sugar containing lipids. They face away from the cytoplasm, and allow for cell-recognition and as an entry point for some bacterial toxins and viruses.
Why is membrane fluidity required?
Some transporter and enzyme activities are modulated by the fluidity of the membrane they are associated with.
Give the functions of some membrane proteins.
Transporters - Move nutrients, metabolites or ions across membranes
Linkers - Join membranes to intra or extracellular molecules
Receptors - Transduce signals from environment or transport Ligands
Enzymes - catalyse reactions at membrane surfaces
What is the glycocalix?
A cell coat made up of glycoproteins and glycolipids that protect cells against chemical, physical and biological damages.
What are N-Glycans?
Glycoproteins that are Asparagine-linked
What are O-Glycans
Glycoproteins that are Serine/Threonine linked
What can Glycans affect?
Glycans can affect health and disease in numerous ways, eg modulate inflammatory response, enable viral immune escape, promote cancer cell metastasis
Give some functions of the Glycocalyx?
Protection - can keep unwanted interactions at distance
Adhesion - Carbohydrate binding proteins on other cell surfaces
Recognition - Cell type specific Glycosylation patterns
Storage - Bind and release growth factors
What are the three major cytoskeletal filaments?
-Intermediate filament
-Actin filaments
-Microtubules
What is the function of the cytoskeleton?
Dynamically organises distinct membrane bound compartments to maintain cell shape as well as facilitate intracellular movement.
Describe Intermediate filaments features?
-Found in both cytoplasm and nucleus
-Provides mechanical strength and prevent overstretching
-Diameter of 10 nm
-Polymer
Describe Intermediate filament’s structure.
-Core structure is an alpha-helical coil
-Two helical monomers make up a dimer
-These dimers work together to create a long tetramer.
These tetramers make lateral associations, with multiple associations making up a filament.
Describe intermediate filaments in the nucleus
-Known as nuclear lamins
-Meshwork lining the inner membrane.
-Act as anchorage points for chromosomes and nuclear pores.
Give the categories of intermediate filaments.
Cytoplasmic which include
-Keratins (in epithelia)
-Vimentin (in connective tissue, muscle cells and neuroglial cells)
-Neurofilaments (in nerve cells)
Nuclear which include
-Nuclear lamins (in all animal cells)
How do all intermediate filaments differ (and stay similar)
The Tail tends to differ massively in size due to different functions (eg much larger in neurofilaments), but the rod tends to stay the same size.
What are the protein subunits of intermediate filaments?
Lamins
What are Lamins (IF)
Protein subunits that line the inner face of nuclear envelope. They provide structural support and attachment sites for binding proteins and chromosomes.
What is Keratin?
Intermediate filaments that are indirectly connected to neighbour cells through desmosomes.
Describe Microtubules features
-Diameter of 25nm
-Tube
-Polymers made up of globular monomers (known as tubulins)
-Appear only in the cytoplasm
-Rigid
-Dynamic
-Have a plus end (Beta) and minus end (alpha)
-Form cylinder of 13 protofilaments (using GTP)
Where do Microtubules assemble from?
-Centrosomes (normal cell)
-Spindle poles (Mitotic spindle)
-Basal body (Cilia/flagella)
What are the two microtubule Motor proteins?
Kinesins and Dyneins
Describe how Kinesins and Dyneins move along the microtubule?
(Globular) Head binds to the microtubule, as well as ATP. This ATP is hydrolysed, releasing the energy required to move along the microtubule. The “cargo” is attached to the tails.
In which direction do Kinesins move along the microtubule?
Towards the (Beta) Plus end
In which direction do Dyneins move along the microtubule?
Towards the (Alpha) Minus end.
Which motor proteins drive/move cilia and flagella?
Moved by Dyneins. This is done by producing microtubule sliding by moving two against each other.
Describe Cilia
-Numerous and short
-Stick out of a cell surface
-Flip back and forth to push material over the surface
-Locomotion of the cell
Describe Flagella
-Few and long (often longer than the cell)
-Locomotion of the entire cell.
Describe the features of Actin filaments.
-Diametert of 6-8nm
-A polymer made up of actin monomers, which require ATP to build.
-Act in the cytoplasm, with a cortex, in bundles, in 2D networks or 3D Gels
-Flexible
Describe the formation of actin filaments.
-Globular (G-actin) monomers add to either end, forming polarised filaments (F-actin)
-Polymerisation associated with ATP hydrolysis.
-Filament assembly and organisation is regulated by actin binding proteins.
Give examples if actin filaments in cells.
-Microvilli in Intestine
-Contractile bundles in cytoplasm
-Sheetlike and fingerlike protrusions
-Contractile ring during cell division
What are the Actin filament’s motor proteins?
Myosins
Describe Myosins
Globular heads that bind to actin filaments and ATP (with this hydrolysis driving movement). Tails bind to cargo.
Describe Myosin I
MOVEMENT
-In all cells
-One head and Tail
-Used in intracellular organisation
-Moves cargo along the actin filament
Describe Myosin II
CONTRACTION
-Primarily in Muscle cells
-Dimer
-Forms filaments
-Act as contractile structures
What is Spectrin?
Cytoskeletal protein that lines the inner plasma membrane, crucial for mechanical strength, stability and shape. Links membranes to the motor proteins and all major filament systems.
What are the 6 stages of mitosis?
Prophase
Prometaphase
Metaphase
Anaphase
Telophase
Cytokinesis
What happens during Prophase (Mitosis)
Chromosomes condense and mitotic spindles form
What happens during Prometaphase (Mitosis)
Nuclear membrane breaks down and spindles attach to chromosomes.
What happens during Metaphase (Mitosis)
Chromosomes align at the centre of the cell
What happens during Anaphase (Mitosis)
Sister chromatids are pulled to their poles of the cell
What happens during Telophase (Mitosis)
Nuclear membrane builds around decondensing chromosomes, and actin creates a contractile ring.
What happens during Cytokinesis (Mitosis)
Actin contracts, splitting the two cells.
What stages make up interphase?
G1, S, G2
What is G1 (Interphase)
First growth phase
-recovery from previous division
-Preparation for DNA synthesis
-Doubles the cells organelles
-Synthetase proteins for DNA replication
What is S (Interphase)
-Synthesis of proteins associated with DNA
-DNA is replicated
What is G2 (Interphase)
-Second growth phase
-Preparation for mitosis - synthesis of proteins required for division
Where are checkpoints located in the cell cycle?
G1, G2 and Mitosis
What is being checked during the G1 Checkpoint in interphase?
-Is the cell big enough?
-Is the environment favourable?
-Is the DNA damaged?
-Is there enough space?
What is being checked during the G2 checkpoint in interphase?
-Is the DNA replicated?
-Is the DNA correct?
-Is the cell big enough?
-Is the environment favourable?
What is being checked during the M checkpoint?
Are all chromosomes attached to the spindle?
What controls passage through the checkpoints in the cell cycle?
Cyclin-dependent kinases (Cdk), which require cyclins to work. These enzymes phosphorylate an amino acid in a protein, giving the signal to proceed to the next stage in the cycle.
What happens to cyclins as they cell cycle advances?
They are destroyed
What is Quiescence in the cell cycle?
A Pause. Cells enter the G0 phase.
What happens during the G0 phase of the cell cycle.
-No growth, only maintenance.
-Can last days, weeks, years (eg skin cells) or be indefinite (neurons, muscle)
-Can reenter G1
What are growth factors?
Molecules that stimulate cell growth, division and differentiation.
-Only low concentrations are required (10^-10M), and many have receptors in the plasma membrane.
-Without it cells enter G0
-Found in blood
Give examples of Growth factors.
-Platelet-derived growth factor (PDGF)
-Fibroblast growth factor (FGF)
-Epidermal growth factor (EGF)
What is apoptosis?
Regulated and programmed cell death/suicide.
What happens during apoptosis?
-Activation of built-in suicide pathway.
-Cell shrinks
-Nuclear condensation and fragmentation
-Membrane changes trigger phagocytes to digest the cells.
When is apoptosis triggered?
By the body to maintain or grow, her due to a pathogenic infection.
How does pathogenic activation cause apoptosis?
Viral infections triggers this, with cytotoxic T-cells toxins or heat shock killing the cell. It can also be done when DNA in the nucleus is damaged or misfolded proteins accumulate in ER.
Give some key events in apoptosis.
-Activation of the p53 gene, which codes for a transcription factor preventing progression at G1 checkpoint.
-Mitochondrial membrane ruptures, leaking cytochrome c, activating caspases.
What do activated caspases do?
-Cleave nuclear lamins, leading to nuclear fragmentation
-Activate DNase, which cuts cell DNA into fragments
-Cleave cytoskeleton, leading to the cell detaching from neighbours, extracellular matrix and the cell rounds up.
What is cell death by necrosis?
Accidental cell death due to injury.
Describe cell death by necrosis.
-Nucleus swells
-Cell swelling causes membrane damage
-Cell bursts (lysis)
-Cell contents released into tissues, triggering an inflammatory response.
What do the body fluid compartments include?
Extracellular fluid (Plasma and interstitial fluid) and Intracellular fluid
Describe the capillary epithelium between the interstitial fluid and plasma.
It is porous, allowing the movement of substances between the different compartments.
Describe the distribution of Na+, K+, Cl- and proteins between the body fluid compartments.
-Intracellular fluid has a high conc of K+ and proteins
-Extracellular fluid has a high conc of Na+, Cl-
-Plasma has a higher conc of proteins compared to ISF
What allows for the chemical disequilibrium between the body fluid compartments?
-Membranes act as barriers to solutes
-Active transport of solutes fights against diffusion to create disequilibrium.
What are the two major classes of transport proteins?
Carrier proteins - Bind solute on one side of membrane and deliver it to other side by confirmation change protein.
Channel proteins - Form hydrophilic pores in membrane through which solutes (mainly ions) can diffuse
What is Primary active transport?
Uphill transport coupled directly to hydrolysis of ATP (usually pumps called ATPases)
What is secondary active transport
A generated solute gradient is used by a cotransporter protein to drive uphill transport of a second molecule.
Describe the pumping cycle of Na+/K+-ATPase
-3 Na+ bind to cytosolic binding sites
-ATP is hydrolysed
-Protein undergoes conformational change, Na+ is released outside
-2 K+ bind to extracellular binding site
-Dephosphorylation occurs and protein returns to original confirmation, releasing K+ into the cytosol
What is symported secondary active transport?
When both transported molecules move in the same direction.
What is antiported secondary active transport?
When the transported molecules move in opposite directions.
What four components make up the neuronal cell?
-Dendrites
-Axon
-Axon terminal
-Cell body
What maintains the resting membrane potential?
-High permeability of the membrane to K+
-Active transport of Na+ out of the cell
What different values add up to make the resting membrane potential?
All the potentials generated by the different ion gradients add together to make the RMP
What are the different stages of an action potential?
-RMP
-Stimulus
-Depolarisation
-Repolarisation
-Hyperpolarisation
-RMP
Describe Stimulation during an action potential.
-Some voltage gated sodium ion channels open
-Na+ diffuses into the cell
Describe depolarisation during an action potential.
-If the threshold voltage (-55mV) is reached, all voltage gated Na+ ion channels open, allowing Na+ to diffuse into the cell.
Describe repolarisation during an action potential.
-K+ ion channel opens and K+ diffuses out of the axon
-Na+ ion channels inactivated
Describe hyperpolarisation during an action potential.
Some Voltage gated K+ ion channels remain open, so excess K+ ions diffuse out of the cell, reducing the voltage of the axon to below the RMP.
Describe the relative refractory period.
The period in which the membrane can generate another action potential, but only if the stimulus is bigger than normal, as some Na+ channels have recovered and some K+ channels are still open.
Describe the absolute refractory period.
The period in which the membrane cannot generate another action potential no matter how big the stimulus, as the Na+ ion channels are inactivated.
At what part of the neuronal cell does an action potential start?
At the axon hillock.
What is the velocity of the action potential relative to?
The square root of Diameter x Rm
How does a larger diameter increase the speed of an action potential?
Higher diameter = more room for local current flow in current loops.
How does higher membrane resistance increase the speed of an action potential?
The higher the membrane resistance, the less current is lost by leaking out of the cell. More current therefore stays in current loops.
What can be found in a high density in the nodes of Ranvier.
Voltage gated Na+ ion channels
Describe saltatory conduction
An action potential starts at the node of ranvier, which jumps to the next node, and so on. This allows the impulse to travel much more rapidly as it doesn’t have to generate an action potential along the entire length.
Describe synaptic transmission.
1)When AP invades the axon terminal, the presynaptic membrane is depolarised
2) this depolarisation opens voltage gated Ca2+ ion channels, allowing ions to diffuse in
3) this release of ions triggers vesicles to release neurotransmitters through exocytosis
4) neurotransmitters diffuse across the cleft, and bind to stereospecific receptors in the post synaptic neurone
5) this binding changes the shape of the ligand gated ion channels, allowing Na+ to diffuse in (this channel is also permeable to K+)
6) The postsynaptic membranne potential reaches a level halfway between the equilibrium ptoentials of the 2 ions (The endplate potential)
What is a Mini-EPP?
Small potentials (with the same shape as the EPP) that occur when the nerve and muscle are at rest. These occur due to the random fusion of vesicles with the cell membrane (releasing neurotransmitters).
How many vesicles are required for synaptic transmission (and how many are often released)?
Approximately 100, but 200-300 are released in response to normal action potentials, with this extra margin being the safety factor.
What enzyme breaks down acetylcholine that is released into the synaptic cleft?
Acetylcholinesterase which cleaves it into acetate and choline.
What is skeletal muscle made up of?
Muscle cells (called muscle fibres). They contain several nuclei, with many mitochondria. Each fibre contains many myofibrils.
What is the I-band and where is it located?
The I-band is located where there is only actin (the thinner filament) and is attached to the Z-line. More light can pass through as it is thinner, making it lighter.
Describe how the different bands, zones and lines change during muscular contraction.
A band - Thick filaments stay the same
I band - Thin filaments alone decrease in length
H zone - Area of thick filaments alone descreases in length
Z line - Distance between each line decreases
What is the H-band and where is it located?
Attached to the M-line, it is a darker band due to Myosin’s thickness, meaning less light passes through.
What is the A-band?
The darkest area of the sarcomere, that contains the overlap of both myosin and actin, meaning the least light can pass through.
Describe the thin filament in a muscle.
-Made up of actin, tropomyosin and troponin
-G-actin molecules form F-actin strands. Each G-actin has 1 myosin binding site.
-2 F-actin strands wind together in a double helix
-Long filaments of tropomyosin wind around the F-actin double helix
-Troponin molecules bind to actin and tropomyosin.
Describe troponin.
-Consists of 3 subunits (trimeric) - T,C,I
-T and I subunits its bind to tropomyosin and actin, blocking the myosin binding site
-When Ca2+ bind to the C subunit, the muosin binding site is uncovered.
What are T-tubules?
Invaginations of the sarcolemma, deep into the muscle fibre
What is each myofibril surrounded by?
The sarcoplasmic reticulum - a tubular structure that enlarges into terminal cisternae near the T-Tubules.
What does an action potential trigger in the terminal cisternae?
An AP in the T-tubules triggers Ca2+ release from the TCs. This rise in intracellular Ca2+ concentration causes contraction
Describe excitation-contraction coupling.
-Ca2+ binds to troponin-C, uncovering the myosin binding site on the actin molecule. This leads to cross-bridge formation.
-Myosin is in its high energy state (having hydrolysed ATP)
-Myosin heads rotate, pulling thin filaments toward centre of sarcomeres (the power stroke)
-ATP binds to myosin head, breaking actin-myosin bond and releasing ADP+Pi
-ATP is split, returning myosin to its high energy state.
Describe muscular relaxation
Relaxation of a muscle requires
-Removal of Ca2+ by the SR (via a Ca2+ ATP pump)
-ATP binding to myosin.
What two systems make up the human nervous system?
The central nervous system and the peripheral nervous system.
What three types of neurones are found in the human nervous system.
-Motor (efferent) neurones
-Interneurones
-Sensory (afferent) neurones
What is true of all neurones?
-Conduct electrical impulses along their plasma membranes and fire action potentials
-Communicate with neighbouring cells via a synapse
-Do no divide
-Longevity - Can live and function for a lifetime
-High metabolic rate - require abundent oxygen and glucose
What are the two types of electrical impulse generated in neurones?
-Action potentials
-Graded potentials
Describe graded potentials.
-Variable strength signals that travel over short distances and lose strength
-Occur in dendrites, cell bodies or axon terminals (NOT IN AXONS)
-Postsynaptic
-Amplitude is directly proportional to the strength of the triggering event
What is a depolarising graded potential known as?
An excitatory postsynaptic potential
What is a hyperpolarising graded potential known as?
An inhibitory postsynaptic potential
What is it called when 1 presynaptic neurone branches and affects a large number of post-synaptic neurones?
Divergence
What is it called when a large number of presynaptic neurones converge to affect a smaller number of post-synaptic neurones?
Convergence
Describe an example of spatial summation.
1 Three excitatory neurones fire, with their graded potentials separately being subthreshold
2 Subthreshold EPSPs arrive at trigger zone together and sum to create a suprathreshold signal
3 An action potential is generated.
Can summation occur from 1 presynaptic neurone?
Through temporal summation, if multiple graded potentials fire close enough together in time the threshold potential can be reached and an action potential generated.
Give examples of secreted neurotransmitters
-Amines (eg adrenaline, dopamine, histamine)
-Amino Acids (Glutamate, GABA, Glycine)
-Polypeptides (Cholecystokinin, enkephalins)
-Purines (ATP, AMP)
-Gases (Nitric oxide)
What are the two mechanisms used for neurotransmitter receptors?
-Ligand-gated ion channels (ionotropic receptors)
-G-protein coupled receptors that activate second messenger systems (metabotropic receptors)
What is the difference in speed of response between ionotropic and metabotropic receptors?
-Ionotropic are rapid and short-acting
-Metabotropic are slower and longer-acting