CARBS - important Reactions and Enzymes to memorize Flashcards
Hexokinase and glucokinase are involved in what important reaction?
At the beginning of glycolysis, priming glucose. IRREVERSIBLE REACTION
* D-glucose –> Glucose-6-phosphate
What does the function of hexokinase or glucokinase result in?
- these are tissue specific glucose primer reactions (IRREVERSIBLE reactions)
- net negative of charge on glucose traps glucose in cell
- conservation of energy (mostly) as ATP is expended to make more ATP by making glucose available for glycolysis
- next enzyme in glycolysis pathway needs the phosphate to bind selectively
what are the important differences between hexokinase and glucokinase?
hexokinase *present in all cells *low km and super specific for sugars, but NOT specific for glucose *inhibited by glucose-6-phosphate glucokinase *super specific for glucose *liver and pancreatic beta-cells *high km for glucose *inhibited by fructose-6-P
what is NORMAL blood glucose concentration?
4-5mM
- multiply by 18 to get mg/dL
- 72-90 md/dL
What reaction concerning fructose is super important to know (glycolysis)?
The SECOND ATP investment in the glycolysis pathway
- Fructose-6-P + ATP –> Fructose-1,6-bis-P + ADP
- enzyme = phosphofructokinase I
Phosphofructokinase I is important for what reaction?
The SECOND ATP investment in the glycolysis pathway
*Fructose-6-P + ATP –> Fructose-1,6-bis-P + ADP
what is the reaction that COMMITS the cell to glycolysis pathway?
- the IRREVERSIBLE ATP-investment in glycolysis of:
- Fructose-6-P + ATP –> Fructose-1,6-bis-P + ADP
- catalyzed by PFK1 = phosphofructokinase 1
What stimulates and inhibits PFK1?
- PFK1 = phosphofructokinase 1
- AMP = stimulates
- Fructose-2,6-bis-P is the MOST POTENT stimulator
- F26BP is made by PFK2
- ATP inhibits
how does cAMP play a role in PFK1 activity?
When cAMP is LOW (high insulin/glucagon ratio, or in a fed state) there is a preferential de-phosph of PFK2,
- de-phosph PFK2 is ACTIVE
- MORE F26BP generation
- since F26BP is the most potent stimulator of PFK1 then low cAMP is indirectly a reason for HIGH PFK1 activity
- this makes sense as cAMP is low when insulin is high and glucagon low, or when there is a need for glycolysis
PFK1 is pretty much regulated by PFK2. How?
Not directly, but indirectly.
- in high insulin, PFK2 is NOT phosphorylated
- de-phosph PFK2 is a kinase and it will make F26BP which is the most potent activator of PFK1, which in turn is the important enzyme for formation of F16BP, the committed reaction of glycolysis
- thus, when PFK2 is phosphorylated, glycolysis is inhibitied (PFK2 is a phosphatase when phosphorylated) and gluconeogenesis is promoted
- opposite is true for high insulin state
Why is glyceraldehyde-3-phosphate dehydrogenase an important enzyme to recognize?
- not for high regulation, but for the step it is involved in
- (2) glyceraldehyde-3-P + 2 NAD+ –> (2) 1,3-bisphosphoglycerate + 2 NADH
- you now have the first energy payoff of glycolysis!
- this is the first oxidation reaction in glycolysis
- NAD+ must be regenerated to continue (thus lactate production in mitochondria-less cells)
What is the first substrate-level phosphorylation reaction in glycolysis?
(2) 1,3-bisphosphoglycerate + 2 ADP –> (2) 3-phosphoglycerate + ATP
* at this point the net ATP is 0 because there were investment reactions before this
* 2 ATP produced at this step
* catalyzed by phosphoglycerate kinase
When does glycolysis produce net positive ATP?
(2) phosphoenol pyruvate + 2 ADP —> (2) pyruvate + 2 ATP
* last part of glycolysis cycle
* catalyzed by IMPORTANT enzyme = pyruvate kinase
Why is pyruvate kinase an important enzyme to recognize?
- involved in the first step in glycolysis that provides net + ATP
- this is actually the last step of glycolysis, that produces pyruvate
- super regulated b/c either glycolysis or gluconeogenesis
- also, pyruvate is super important hub for other reactions, so pay attention to what makes pyruvate or breaks it
- 2nd reaction of substrate-level phosphorylation
- inhibited by phosophorylation (PKA)
- inhibited by alanine
- inhibited by ATP
- stimulated by de-phosphorylation
- stimulated by F16BP
- think insulin and glucagon messing with PKA for this one
When you see enzyme-linked hemolytic anemia you think what two deficiencies
- most common is G6PD
- second most common is pyruvate kinase deficiency
- this means that RBCs never get ATP net +, and since they don’t have mitochondria, it’s hard for them to get energy
Lactate dehydrogenase does what?
- it works BOTH directions for conversion of pyruvate to lactate
- uses CoA and CO2
- makes NAD toward lactate
- uses NAD to make NADH toward pyruvate
what is happening in the fed vs. fast state in terms of pyruvate handling?
Fed state - pyruvate is used to make other stuff, either fatty acid synthesis or amino acids
Fasting state - pyruvate is made into oxaloacetate and shoved down the TCA cycle
Why is the reaction catalyzed by the pyruvate dehydrogenase complex so very important for TCA cycle?
- this is the first step of feeding pyruvate into the TCA cycle
- it makes acetyl-CoA
- it takes place immediately after pyruvate is moved from the cytoplasm to the mitochondria
- dependent on several co-enzymes
- dependent on several vitamins
what vitamins are important for the pyruvate dehydrogenase complex?
Thiamine (vitamin B1) - TTP
Riboflavin (vitamin B2) - FAD
niacin - NAD
pantothenate coenzyme A
why is thiamine deficiency an example of important glucose handling?
thiamine, or vitamin B1, is super important for the pyruvate dehydrogenase complex to make acetyl-CoA to start the TCA cycle
- if there is little B1, then the brain has trouble with it’s main energy producing pathway (oxidation of glucose with TCA and electron transport)
- thus, B1 deficiency presents as wernicke’s encephalopathy b/c neurons are whiny when starved
- also can present with beriberi problems in the heart because the heart muscle also uses TCA cycle a ton
How is PDH complex regulated (fed vs. fasting)?
- activated when energy is low
- inhibited when energy is high
- NADH, ATP, Acetyl-CoA, Fatty acids all alosterically inhibit the complex
- fasting IN THE LIVER, pyruvate is shunted to the gluconeogenesis pathway by the work of pyruvate carboxylase, which is stimulated by acetyl-CoA presence
- essentially, IN THE LIVER, in a fasting state pyruvate is moved up the chain, not down
- insulin = dephosp state, induction
- glucacon = phosph state, inhibition
- increased clacium means incrased dephosp state as calcium stimulates phosphatase
In one turn of the TCA cycle, what leaves and what enters?
1 acetyl group (acetyl-CoA) - 2 carbons that enter
- 2 CO2 will leave the cycle
- oxaloacetate is used, but regenerated, leading to no net change in this carbon skelaton
What is important about citrate synthase?
- this enzyme is involved in the combining of the 2C acetyl-CoA with the 4C oxalaloacetate into citrate
- irreversible
- citrate is an important allosteric regulator and hub for formation of fatty acids
- allosterically inhibits PFK1 (which is the rate-limiting step in glycolysis, so this is feedback inhibition at its finest)
The production of alpha-ketoglutarate is important why?
- catalyzed by isocitrate dehydrogenase
- first CO2 produced
- first NADH produced
- entry point for amino acids to start gluconeogenesis