Biomembrane Structure Flashcards
Lumen
fluid filled interior of organelle
What is the bilayer membrane composed of
phospholipids
hydrophobic tails and hydrophilic heads
proteins embedded in
Fluid Mosaic model
individual phospholipids can move laterally and spin within the plane of the membrane – causing the fluidity
What give membrane strength
non-covalent interactions between phospholipids and between phospholipids and proteins
Hydrophobic core helps with what
prevents unassisted movements of water soluble substances from one side to the other
what do integral proteins often form
dimers and higher order oligomers
How do peripheral proteins associate with membrane
non-covalent interactions with integral proteins or membrane lipids
How are lipid anchored proteins tethered
covalently attached hydrocarbon chain
What is the core of the bilayer
extremely hydrophobic
Why is the hydrophobic bilayer a good thing
prevents diffusion of anything hydrophilic across the membrane and very stable interactions (hydrophobic-van der waals) hold together
How did some organelles obtain double membrane
endosymbiont hypothesis
Exoplasmic faces
outside of cell
Cystolic faces
facing the cystol of the cell
three classes of lipids in the biomembrane
Phosphoglycerides , sphingolipids, sterols
what is the most abundant lipid in the membrane
phosphoglycerides
Structure of phosphoglycerides
glycerol 3-phosphate bound to: 2 fatty acid chains (16 or 18 carbon long) and one of many different head groups
Different Head groups
choline head-> phosphatidylcholine
phosphatidylethanolamine
phosphatidylserine
phosphatidyl-inositol
Sphingolipids structure
sphingosine molecule ( amino alcohol with a long fatty acid tail) bound to a long fatty acid chain and one of several head groups
Sphingomyelin
phosphocholine head group and is important in nerve cells
Glycolipids
have sugar head group
usually on leaflet facing outside
helps protect cell
not a phospholipid
Structure of sterols
4 carbon rings w hydrophilic hydroxyl group on 1 ring
very hydrophobic
Do sterols form membranes
NO
they wedge themselves between other membrane lipids
Sterol function
to regulate membrane fluidity
Most abundant sterol in membrane?
cholesterol
What contributes to fluid like consistency of the membrane
phospholipids can move laterally spin in place (like a top) vibrate flip sides of the bilayer
How are lateral movements of phospholipids detected
FRAP
FRAP process
- label all molecules specific type membrane lipid with fluorescent dye
- shine laser on small patch of membrane, bleaching dye in that area
- measure how long takes labeled lipids to move into that spot (indicates rate of lateral movement
Factors Influencing membrane fluidity
1/ ratios of different types of lipids
2/ saturated v unsaturated phospholipids
3/ amount of cholesterol
Ratios of different types of lipids
some phospholipids make membrane more fluid
dif organelles have dif ratio of lipids
Saturated
all single bonds
unsaturated
at least one double bond
how does saturation affect membrane
saturated= membrane tends to be rigid unsaturated= membrane are much more fluid
Why does unsaturated fatty acid tails allow for more fluidity
put kinks in thus fatty acid tails cant pack as tightly
How does cholesterol affect fluidity of membrane
inserts itself between fatty acid tails of bilayer
high concentration blocks phospholipids from moving laterally decreasing membrane fluidity
low concentration prevents phospholipid tails from packing in tightly thus increasing membrane fluidity
Distribution of lipids in membrane
different leaflets of the bilayer have dif phospholipid compositions thus creating a difference in fluidity between two leaflets
why is a dif in fluidity between the two leaflets important
membrane curvature
lipid rafts
specific lipids grouped in patches in a single leaflet
properties of lipid rafts
rich in cholesterol
resistant to detergent digestion
rich in protein which usually function to transmit a signal from outside of the cell to the inside (hormone- receptor)
Which is thicker: sphingomyelin bilayer or phosphoglyceride?
sphingomyelin
Effect of cholesterol on phosphoglyceride bilayer vs the sphingomyelin
on PC increases thickeness but does not affect thickness of SM
Phospholipid shape of those with small head groups
conical
PC on the exoplasmic leaflet and PE on the cystolic face causes what
natural curvature
3 categories of membrane proteins
Integral, lipid anchored, peripheral proteins
How are integral proteins anchored
some to the cytoskeleton
some just more freely laterally
three domains of integral proteins
cytosolic, transmembrane, extracellular
What do each of the integral protein domains contain
extracellular contains one or more sugar attached (glycoproteins)
Extracellular and cytoplasmic contain mostly hydrophilic amino acids
transmembrane hydrophobic amino acids
Integral protein domains all consist of what
alpha helices or beta sheets
Lipid anchored proteins
covalently bonded to lipid tail, lipid embeds itself into 1 leaflet of bilayer
Peripheral membrane proteins
never interact with lipids, interacts with integral proteins or hydrophilic phospholipid head groups
3 added lipid groups on lipid anchored proteins
Fatty acyl group
Prenyl group
GPI anchor
What is a fatty acyl group
saturated fatty acid chain (14-16 carbons)
usually added to glycine or cysteine residue at beg or end of protein
What is a prenyl group
chain of prenyl units attached to cysteine residue
What is a GPI anchor
contains molecule of PI (two fatty acid tails are embedded in the membrane ), several sugar residues (outside of membrane), and ethanol amine (links to GPI anchor to the protein)
What moves slower lipids or proteins along the membrane
proteins (10-20 times slower)
Why do some membrane proteins not move
they have strong interactions with the cytoskeleton that underlies most membranes
How to measure movement of proteins along the membrane
FRAP and cell fusion assays
Cell fusion assays
- fuse human and mouse cell
- add mouse protein specific antibody, all the antibody label is
- time for protein movement, mouse protein seen dispersed
Function of membrane proteins
receptors (EX. bind to hormones) enzymes cell adhesions proteins transport cell recognition
How are fatty acids synthesized
from acetyl CoA by water soluble enzymes and modified by elongation and desaturation in the ER
What facilitates movement of fatty acids
small cytosolic proteins
What moves phospholipids from one membrane leaflet to the opposite
flippases
How is cholesterol synthesized
enzymes in the cytosol and ER membrane
Fatty Acids are transported within cells by what
Fatty acid binding proteins
Step 1 of phospholipid synthesis in ER membrane
2 fatty acids from actyl CoA esterified to phosphorylated glycerol backbone forming phosphatidic acid whose two long hydrocarbon chains anchor molecule to membrane
Step 2 of phospholipid synthesis in ER membrane
phosphate converts phosphatidic acid into diacylglycerol
Step 3 of phospholipid synthesis in ER membrane
polar head group transferred from cytosine diphosphocholine to the exposed hydroxyl group
Step 4 of phospholipid synthesis in ER membrane
flippase proteins catalyze movement of phospholipids from the cytosolic leaflet in which that are initially formed to exoplasmic leaflet
Methods of cholesterol and phospholipid transport between membrane
A: vesicles transfer lipids between membranes
B: lipid transfer is consequence of direct contact between membranes that is mediated by membrane embedded proteins
C: transfer is mediated by small soluble lipid transfer proteins
synthesis of cholesterol
beta hydroxy beta methylglutaryl CoA converted to mevalonic acid by HMG-CoA
Mevalonate then converted to isopentenyl pyrophosphate which can then be converted to cholesterol