Biology Flashcards
6 kingdoms
Bacteria, archaea, Protista, fungi, plantae, and animalia
What are the 2 major cell types
Prokaryotic & Eukaryotic
More complex than prokaryotes
Eukaryotes
Cell membrane
Aka plasma membrane
Regulates passage of materials into and out of the cell
Consists of phospholipid bilayer w/ proteins embedded throughout the
Nucleus
Contains dna wound structural proteins called histones
Ribosome
Facilitate protein production
Endoplasmic reticulum
Network of membrane enclosed spaces involved in the transport of materials throughout the cell, particularly those materials destined to secreted by the cell
Golgi apparatus
Primary for cellular trafficking
Mitochondria
Sites of aerobic respiration
Conversion of sugars, fats, and other sources of fuel into usable energy (ATP)
Cytoplasm
Where most of the cell’s metabolic activity occurs
Includes cytosine and all organelles of the cell
Cytosol
Cellular fluid contained within cell membrane
Cyclists
How transport w/in cytoplasm occurs
Streaming movement w/in the cell
Animal cell vacuole
Smaller than plant ones
Transport vesicle for exocytosis & endocytosis
Storage of water & minerals
Centrioles
Composed of microtubules
Involved in spindle organization during cell division
Lysosomes
Contain hydrolytic enzymes involved in intracellular digestion
Break down materials ingested by the cell
Cytoskeleton
Supports the cell, maintains its shape, and aids in cell motility
Components of cytoskeleton
Microtubules
Microfilaments
Intermediate filaments
Microtubules
Hollow rods of polymerized tubulin
Provide framework for organelle movement
Cilia and flagella
Specialized arrangements of microtubules
Involved in cell motility & cytoplasmic movement
Microfilaments
Solid rods of actin
Cell movement and support
Move materials across the plasma membrane
Intermediate filaments
Like keratin
Serve as structural backbone of the cell
Can withstand a lot of tension
Help anchor organelles
Simple diffusion
Net movement of dissolved particles down their concentration gradient
Osmosis
Simple diffusion of water from region of lower solute concentration to a region of higher solute concentration
Hypertonic cell
Water will flow out of the cell into the surrounding medium
Plasmolysis
Will cause cell to shrivel
Hypotonic
Water will flow into the cell causing it to swell and lyse
Lyse
Burst
Isotonic
Having the same concentration inside and outside the cell
Facilitated diffusion
Net movement of dissolved particles down their concentration gradient thru special channels or carrier proteins in the cell membranes
Active transport
Net movement of dissolved particles against their concentration gradients
Requires energy
Symporters
Move 2+ ions or molecules in the same direction across the membrane
Antiporters
Exchange 1+ ions or molecules for another ion or molecule across the membrane
Active transport pumps
Energy dependent carriers; require ATP
Endocytosis
Cell invaginates, forming vesicle that contains extracellular medium
Bring large volumes of extracellular material inside the cell
Pinocytosis
Ingestion of fluids or small particles
Phagocytosis
Engulfing of large particles
Exocytosis
Release a large volume of contents to the outside
Unicellular organism cell division
Means of reproduction
Multicellular organism cell division
Method of growth, development, and replacement of worn out cells
2 courses of cell division
Mitosis and meiosis
Interphase
Period of growth and chromosome replication
Cell spends 90% of life here
G1 interphase
Initiates interphase
Active growth phase
Varies in length
Cell increases in size and synthesizes protein
Length of this phase determines length of entire cell cycle
s interphase
Period of dna synthesis
G2 interphase
Cell prepares to divide
Grows and synthesizes protein
M phase
When mitosis or meiosis occurs
Mitosis
2 daughter cells
Takes place in somatic cells
Nuclear division followed by cellular division
4 phases: prophase, metaphase, anaphase, and telophase
basic unit of DNA
nucleotide
nucleotide composition
deoxyribose (a sugar) bonded to a nitrogenous base
2 types of nitrogenous bases
purines and pyrimidines
purines in DNA
include adenine (A) and guanine (G)
pyrimidines in DNA
include cytosine (C) and thymine (T)
RNA exclusive nitrogenous base
uracil (U) instead of thymine (T)
larger in structure due to possessing a 2 ring nitrogenous base
purines compared to pyrmidines
purines pair with pyrimidines in what pattern
T forms 2 hydrogen bonds w/ A, and G forms 3 hydrogen bonds w/ C
arrangement of DNA
double stranded, antiparallel arrangement
Discovered by Watson & Crick
DNA helicase
breaks hydrogen bonds b/w nitrogenous bases from each strand
replication fork
the opening in the DNA molecule created by DNA helicase
topoisomerase
removes torsional strain by cutting, twisting, and then rejoining the strands of DNA
replication bubble
each single strand can as a template for complementary base pairing.
allows for synthesis of 2 new daughter strands
semiconservative replication
each new daughter helix contains an intact strand from the parent helix and a newly synthesized strand
DNA polymerase
reads the parent DNA strand & creates a complementary, antiparallel daughter strand.
always reads the parent strand in the 3’–>5’ direction which creates the daughter strand in the 5’–> 3’ direction.
can only add nucleotides to the 3’ ends
lagging strand of DNA
has its 3’ end facing away from replication fork.
synthesis and movement of replication fork are in opposite directions.
leading strand of DNA
has its 3’ end facing toward the replication fork.
continually synthesized.
okazaki fragments
short fragments of synthesized DNA
DNA ligase
joins together DNA fragments
gene
unit of DNA that encodes a specific RNA molecule thru the process of transcription and thru translation, that gene can be expressed as a protein
transcription
process in which genetic info is passed from DNA to RNA
template strand
complementary to the transcription of RNA in the 5’–>3’ direction
coding strand of DNA
identical to mRNA strand
translation
process in which genetic info is passed from mRNA to protein
ribonucleic acid (RNA)
a polynucleotide that is structurally similar to DNA but the exceptions of
- sugar constituent is ribose
- uracil in place of thymine
- most RNA is single stranded
where is RNA found in the cell
nucleus and cytoplasm
3 major types of RNA
mRNA, tRNA, and rRNA
messenger RNA
- carries the complement of DNA sequence
- transports info from the nucleus to the ribosomes for protein synthesis
- made from ribonucleotides complementary to the template strand of DNA
transfer RNA
- found in cytoplasm
- assists in translation of mRNA’s nucleotide code into sequence of amino acids
anticodon
- 3 nucleotide sequence
- complementary to 1 of the mRNA codons
charged tRNA
when a tRNA is complexed w/ the appropriate amino acid
approx. 40 known types of tRNA
at least one type for each amino acid
ribosomal RNA
- synthesized in the nucleolus of eukaryotes and in the cytoplasm of prokaryotes
- integral part of ribosomal machinery during protein assembly
- most abundant RNA in the cell
TATA box
approx 30 bp upstream
sequence of TATAAT
Pribnow box
approx 10 bp upstream
sequence of TTGACA
introns
extra sequences & are subsequently spliced out by the spliceosome
“INtrons stay IN the nucleus”
exons
nucleotides necessary to make the proteins & are kept during the post-transcriptional processing
“EXons will EXit the nucleus as part of the mRNA”
codons
the 3 nucleotide sequences on the mRNA that correspond to a specific amino acid.
there are 64 possible codons.
all codons are written in the 5’–>3’ direction
stop codons
instruct the ribosome to the stop translation
- UAA (U Are Annoying)
- UGA (U Go Away)
- UAG (U Are Gone)
translation
process thru which mRNA codons are translated into a sequence of amino acids.
occurs in cytoplasm & involves ribosomes, amino acids, enzymes & other proteins
4 stages of translation
initiation, elongation, translocation, & termination
initiation stage of translation
when the ribosomal subunit binds to the mRNA near its 5’ end
elongation stage of translation
3 step cycle repeated for each amino acid.
ribosome moves in the 5’ to 3’ direction along the mRNA
3 important binding sites of the ribosome
A-site: holds the incoming aminoacyl-tRNA complex
P-site: holds the tRNA that carries the growing polypeptide chain, and where initiation complex formed
E-site: where the now uncharged tRNA briefly pauses before it is expelled from the ribosome, to be recharged
peptide bond
formed when polypeptide is passed from the tRNA in the p-site to the tRNA in the a-site
translocation stage of translation
ribosome advances 3 nucleotides along the mRNA in the 5’ to 3’ direction
termination stage of translation
triggered once a stop codon is encountered
order of sites in the ribosome during translation
APE
A-site to P-site to E-site
post-translational modifications
polypeptide chain undergoes modifications to become fully functional.
can include cleavage or addition
cleavage
certain amino acids sequences are removed from the chain
addition
biomolecules are added to the peptide
common addition processes
phosphorylation, carboxylation, glycosylation, prenylation
phosphorylation
addition of phosphate group
carboxylation
addition of carboxylic acid groups
glycosylation
addition of oligosaccharides (sugars), completed in golgi body
preenylation
addition of lipid groups, allowing for incorporation of the protein into membranes
eukaryotic transcription
occurs in the nucleus.
monocistronic mRNA transcripts
prokaryotic transcription
occurs in the cytoplasm.
posttransciptional modification cannot occur.
polycistronic mRNA transcipts
proteins
formed by the culmination of transcription & translation, proteins are functional units of life. vast majority of all cellular functions are completed by proteins
4 levels of protein structure
primary, secondary, tertiary, and quarternary