Biochemistry Flashcards
Functions of B1 (thiamine)
Cofactor for…
- Pyruvate dehydrogenase (links glycolysis to TCA cycle)
- alpha-ketoglutarate dehydrogenase (TCA cycle)
- Transketolase (HMP shunt)
- Branched chain ketoacid dehydrogenase
Vitamin B1 (thiamine) deficiency (and diagnosis)
Impaired glucose breakdown, leading to ATP deletion
Worsened by glucose infusion (ALWAYS give thiamine infusion with glucose in someone you suspect with a deficiency)
Diagnosis made by an increase in RBC transketolase activity following B1 administration
Functions of Vitamin B2 (riboflavin)
Component of flavins FAD and FMN, used as cofactors in redox reactions (ie, succinate dehydrogenase reaction in TCA cycle)
FAD and FMN are derived from riboFlavin (B2 = 2 ATP)
Vitamin B2 (riboflavin)
Cheilosis (inflammation of lips, scaling and fissures at corner of mouth)
Corneal vascularization
(the 2 Cs of B2)
Functions of Vitamin B3 (niacin)
Constituent of NAD+ and NADP+ (used inredox rxns).
Derived from tryptophan.
Synthesis requires B2 and B6
NAD derived from Niacin (B3 = 3ATP)
Vitamin B3 deficiency
Glossitis
Three Ds:
Diarrhea, Dementia, Dermatitis (broad collar rash)
Function of Vitamin B5
Essential component of coenzyme A (a cofactor for acyl transfers) and fatty acid synthesis
Vitamin B5 deficiency
Dermatitis, eneritis, alopecia, adrenal insufficiency
Functions of B6 (pyridoxine)
Converted to pyridoxal phosphate (PLP), a cofactor used in transamination, decarboxylation reactions, glycogen phosporylase
Synthesis of cystathionine, HEME, NIACIN, histamine and neurotransmitters including serotonin, epinephrine, norepi, dopamine and GABA
Homocysteine to Cysteine
Succinyl-CoA to Heme
Vitamin B6 deficiency
Convulsions, hyper-irritability, peripheral neuropathy, sideroblastic anemias due to impaired hemoglobin synthesis
Functions of Vitamin B7 (biotin)
Cofactor for carboxylation enzymes:
Pyruvate carboxylase: pyruvate to oxaloacetate
Acetyl-CoA carboxylase: aceyle Co-A to malonyl CoA
Propionyl CoA carboxylase: propionyl CoA to methylmalonyl CoA
Vitamin B7 (biotin) deficiency
Relatively rare. Dermatitis, alopecia, enteritis. Caused by antibiotic use or excessive ingestion of raw egg whites
Functions of B9 (folate) deficiency
Converted to tetrahydrofolic acid (THF), a coenzyme for 1-carbon transfer/methylation reactions
Important for the synthesis of nitrogenous bases in DNA and RNA
Vitamin B9 (folate) deficiency
Small reserve pool stored primarily in the liver
Macrocytic, megaloblastic anemia; hypersegmented polymorphonuclear cells; glossitis; NO neuro symptoms
Can be caused by several drugs (phenytoin, sulfonamides, methotrexate)
Most common vitamin deficiency in the US. Seen in alcoholism and pregnancy
Labs to diagnos Vit. B9 (folate) deficiency
Increased homocysteine
Normal methylmalonic acid
Functions of Vitamin B12
Cofactor for methionine synthase and methylmalonyl-CoA mutase
Homocysteine to Methionine
Methylmalonyl-CoA to Succinyl-CoA
Vitamin B12 deficiency
Macrocytic, megaloblastic anemia
Hypersegmented PMNs
Parasthesias and subacute combined degeneration (degeneration of dorsal columns, lateral corticospinal tracts, and spinalcerebellar tracts)
Found in animal products. Synthesized only by microorganisms. Very large reserve pool
Labs to diagnose Vitamin B12 deficiency
Increased serum homocysteine AND increased methylmalonic acid
What does the drug Fomepizole inhibit?
It inhibits Alcohol dehydrogenase
Prevents Ethonal»_space;> Acetaldehyde
Antidote for methanol or ethylene glycol poisoning
What does the drug Disulfiram inhibit?
It inhibits Acetaldehyde dehydrogenase
Prevents Acetldehyde»_space; Acetate
Drug for alcohol abstinence, contributes to hangover symptoms
Ethanol metabolism increases the ____/_____ ratio in the liver, causing…
Increases the NADH/NAD+ ratio, causing…
- Pyruvate»_space; Lactate
- Oxaloacetate»_space; Malate (prevents gluconeogenesis and causing fasting hypoglycemia)
- Dihydroxyacetone phosphate»_space; glycerol-3-phosphate (combines with fatty acids to make triglycerides, causing hepatosteatosis)
What is the rate determining enzyme in Glycolysis?
Regulators of that step?
Phosphofructokinase-1 (Fructose 6-P»_space; Fructose 1,6-BP)
Down-regulated by: ATP and Citrate (TCA)
Up-regulated by AMP and Fructose-2,6-bisphosphate
What is the rate determining enzyme in Gluconeogenesis?
Regulators of that step?
Fructose 1,6-bisphosphatase (Fructose 1,6-BP to Fructose 6-BP)
Down-regulated by AMP and fructose-2,6-bisphosphate
What is the rate determining enzyme in the TCA cycle?
Regulators of that step?
Isocitrate dehydrogenase (Isocitrate»_space; alpha-Ketoglutarate)
Down-regulated by: ATP, NADH
Up-regulated by: ADP
What is the rate determining enzyme in Glycogenesis?
Regulators of that step?
Glycogen synthase
Down-regulated by: Epinephrine, Glucagon
Up-regulated by: Glucose-6-phosphate, insulin, cortisol
What is the rate determining step in HMP shunt?
Regulators of that step?
Glucose-6-phosphate dehydrogenase (G6PD)
(Glucose-6-phosphate»_space; 6-phosphogluconolactone)
Down-regulated by: NADPH
Up-regulated by: NADP+
What is the rate determining step in De Novo Pyrimidine synthesis?
Regulators of that step?
Carbomoyl phosphate synthetase II
(Glutamine + CO2»_space; Orotic acid)
Down-regulated by: UTP
Up-regulated by: ATP
What is the rate determining step in De Novo Purine synthesis?
Regulators of that step?
Glutamine-phosphoriboslpyrophosphate
(PRPP»_space; IMP)
Down-regulated by: AMP, inosine monophosphate (IMP), and GMP
What is the rate determining step of the Urea Cycle?
Regulators of that step?
Carbomoyl phosphate synthetase I
(CO2 + NH3»_space; Carbamoyl phosphate)
Up-regulated by: N-acetylglutamate
What is the rate determining step of Fatty Acid synthesis?
Regulators of that step?
Acetyl-CoA carboxylase
(Acetyl-CoA»_space; Malonyl-CoA)
Down-regulated by: Glucagon, palmitoyl-CoA
Up-regulated by: Insulin, Citrate
What is the rate determining step of Fatty Acid oxidation?
Regulators of that step?
Carnitine acyltransferase I
Down-regulated by Malonyl-CoA
What is the rate-determining step in Ketogenesis?
HMG-CoA synthase
(
What is the rate-determining step in Cholesterol synthesis?
Regulators of that step?
HMG-CoA reductase
(HMG CoA»_space; Mevalonate)
Down-regulated by: Glucagon, cholesterol
Up-regulated by Insulin, thyroxine
The four fates of Pyruvate
- Alanine via Alanine aminotransferase (B6 cofactor)
- Oxaloacetate via Pyruvate carboxylase
- Acetyl-CoA via Pyruvate dehydrogenase (B1, B2, B3, B5, lipoic acid cofactors)
- Lactate via Lactic acid dehydrogenase (B3 cofactor)
Function of HMP shunt
Provides a source of NADPH from abundantly available glucose-6-P
Makes ribose for nucleotide synthesis and glycolytic intermediates
In lactating mammary glands, liver, adrenal cortex and RBCs
Essential fructosuria
Defect in fructokinase
(Fructose»_space; Fructose 1-P)
Autosomal recessive
Fructose appears in blood and urine. Benign condition.
Fructose intolerance
Autosomal recessive
Defect in aldolase B
Fructose 1-P accumulates, inhibition of glycogenolysis and gluconeogenesis
Hypoglycemia, jaundice, cirrhosis, vomiting. After eating fruit, juice or honey.
Tx: decrease intake of both fructose and sucrose
Galactokinase deficiency
Autosomal recessive
Galactitol accumulates if galactose is present in diet
Galactose appears in blood and urine. Infantile cataracts. Failure to track objects or to develop a social smile
Classic galactosemia
Autosomal recessive
Absence of galactose-1-phosphate uridyltransferase.
Galactitol accumulates in lens of eye. Other toxic substances accumulate as well
Sx: Failure to thrive, jaundice, hepatomegaly, infantile cataracts, intellectual disability. E.coli sepsis in neonates
Tx: exclude galactose and lactose