Biochemistry Flashcards
Biochemistry
Items needed for de novo pyrimidine synthesis
Aspartate,CO2,Glutamine, Phosphate
Biochemistry
RLE for pyrimidine production
Carbamomyl Phosphate Synhtase II (CPS II)
Biochemistry
Items needed for de novo purine synthesis
Glycine, Asprtate, glutamine, CO2, THF
“GAG” mnemonic
Biochemistry
Orotic Aciduria
Inability to convert orotic acid to UMP (de novo pyriidine synthesis) because of UMP Synthase
AR
increased orotic acid in urine, megaloblastic anemia (doesnt improve with VitB12/folic acid), FTT, NO Hyperammonia
Tx: Oral uridine adminstration
Biochemistry
RLS for purine synthesis (PRPP –> –> –> IMP)
Glutamine PRPP Amidotransferase
KO via 6-MP
Biochemistry
UDP –> dUDP
via Ribonucleotide reductase
Inhibited by hydroxyurea
Biochemistry
Carbamoyl pohphsate
Involved in 2 metabolic pathways
- De novo pyrimidine synthesis
- Urea cycle
Biochemistry
dUMP –> dTMP
Thymidylate Synthase, inhibited by 5-FU (analog of uracil)
Biochemistry
DHF –> THF
Diydrofolate reductase, inhibited by MTX (euk) and TMP (Prok)
Biochemistry
Advantages of Purine Salvage Pathway
Reutilizes nucleotides,
prevents loss of ATPs needed for de novo purine synthesis,
neuclotides formed in this pathway inhibit de novo pathway at RLS
Decreased uric acid formation - end product of purine catabolism.
Biochemistry
HGPRT
Needed for conversion of Guanine to GMP and hypoxanthine to IMP
LESCH NYHAN Syndrome; X-linked Recessive
KO causes defective purine salvage, wth excess uric acid prdxn and de novo purine synthesis
Retardation, self mutilation, aggression, hyperuricema, gout,choreathetosis:
tx; allopurinol
Biochemistry
Cause of SCID
Adenosine deaminse deficienecy, needed for conversion of adenosine to inosine
Causes impaired DNA synthesis and hence decreased lymphocyte count
AR
Biochemistry
Nucleotide excision vs base excision vs mismatch repair
Nucleotide and BER = late damage, 1. NER is for bulky damage/pyrimidine dimers (xerdoerma pigmentosum)
2. BER is for damaged bases
- Early damage, can lead to HNPCC
Biochemistry
Immunohistochemical stains for intermediate filaments:
- Vismentin
- Desmin
- Cytokeratin
- GFAP
- Neurofilaments
- Connective tissue
- Muscle
- Epithelial cells
- Neuroglia
- Neurons
Biochemistry
Metabolism in:
- Mitochondria
- Cytoplasm
Mitochondria: Fatty acid oxidation, acetyl CoA production, TCA cycle, oxidative phosphorylation
Cytoplasm : fatty acid synthesis, HMP shunt, protein synthesis, steroid synthesis, cholesterol synthesis
Both: Heme synthesis, Urea Cycle, Gluconeogenesis (HUGs take two (both))
Biochemistry
Kinase Phosphorylase Phosphatase Dehydrogenase Carboxylase
- Uses ATP to add high energy phosphate group onto substrate
- adds inorganic phopshate without ATP
- removes phosphate group
- catalyzes oxidation/reduction reactions
- transfers CO2 groups with help of biotin
Biochemistry
RLS glycolysis
Phosphofructokinase 1
+ : AMP, fructose 2,6 BO
- : ATP, citrate
Biochemistry
RLS Gluconeogenesis
Fructose 1,6 Bisphosphatase
+: ATP
- : AMP, fructose 2,6-BP
Biochemistry
RLS TCA cycle
Isocitrate dehydrogenase
+ : ADP
- : ATP, NADH
Biochemistry
Glycogen synthesis RLS
glycogen synthase
+: glucose, insulin
-: epinephrine, glucagon
Biochemistry
Glycogenolysis RLS
Glycogen phosphorylase
+ : EPI, Glucagon, AMP
- : Insulin, ATP
Biochemistry
RLS HMP Shunt
Glucose 6P Dehydrogenase
+ : NADP
-: NADPH
Deficient in G6PD deficiency, causing hemolytic anemia
Biochemistry
De novo pyrimidine synthesis RLS
Carbamoyl phosphate synthetase II (CPS II)
Biochemistry
De novo purine synthesis RLS
Glutamine-PRPP amidotrnasferase
-: AMP, IMP, GMP
Biochemistry
Urea Cycle RLS
Carbamoyl Phosphate synthetase I
+: N acetylglutamte
Biochemistry
Fatty acid oxidation RLS
Carnitine acyltransferace I
+: insulin, citrate
-: glucagon, palmitoyl CoA
Biochemistry
Fatty Acid Oxidation RLS
Carnitine acyltrnasferase I
-: Malonyl-CoA
Biochemistry
Ketogenesis RLS
HMG-CoA synthase
Biochemistry
Cholesterol synthesis RLS
HMG-CoA reductase
+: insulin, thyroxine
-: glucagon,cholesterol
target of statins
Biochemistry
NADPH is a product of and is used in :
HMP Shunt
- Anabolic processes
- respiratory burst
- P450
- Glutathione reductase
Biochemistry
Hexokinase vs. Glucokinase
Glucose –> Glucose -6 - phosphate
- Hexokinase: high affinity (low Km) for glucose (can continue when blood glucose is low), low capacity (low Vm), feedback inhibited by product, fond in all tissues
- Glucokinase: lower affinity for glucose (high Km) but high capacity (high Vmax), induced by insulin, found in regulatory cells like liver and pancreas. Hence at higher concnetrations, glucose is stored in liver
Biochemistry
Glycolysis:
3 regulatory enzymes
1) Hexokinase/glucokinase
2) PFK1
3) Pyruvate kinase (+F16BP, -ATP, -alanine)
Biochemistry
Key enzymes for gluconeogenesis
1) Pyruvate carboxylase
2) PEP carboxykinase
3) Fructose 1,6 bisphosphatase
4) Glucose-6-phosphatase
Biochemistry
Regulation by Fructose 2,6, bisphosphate
Fed state: + insulin, F26BP is promoting conversion of F6P to F16BP towards glycolysis via PFK-1 (more glycolysis)
Fasting state: +glucagon, F26BP is promoting conversion of F6P towards gluceoneogenesis (less glycolysis)
Biochemistry
Pyruvate Dehydogenase Complex
“Tender loving Care for Nobody”
-B1, B2, B3, B5, lipoic acid
(Thiamine, lipoic acid, CoA, FAD, NAD)
Pyruvate –> Acetyl CoA
Biochemistry
Pyruvate Metabolism’s different roles
1) Alanine aminotransferase (alanine created, carries amino groups to liver from muscle)
2) Pyruvate carboxylase (oxalacetate created, can replenish TCA cycle or be used in gluconeogenesis
3) Pyruvate dehydogenase (Acetyl CoA created, transition from glycolysis to TCA cycle)
4) Lactic acid dehydrogenase (lactate created, end of anaerboic glycolysis)
Biochemistry
GLUT transporters
Glut1: RBC, BBB - low level basal rate
Glut2: hepatocyte/pancreas, small intestines, kidneys, important for regulation, highest Km
Glut3: neurons/placenta
Glut4: Skeletal/adipose tissues (requires insulin)
Gllut5: speratocytes and GI tract (fructuse transport)