biochem lectures 6 & 7 pt 1 Flashcards
describe mitochondria structure
double membrane organelle; has 2 membranes
describe origins of mitochondria
endosymbiotic
what does two membranes in mitochondria allow for
creates microcompartments
what is double membrane structure of mitochondria important for
important for how ox phos takes place
what 2 membranes in mitochondria
outer and inner mitochondrial membrane
describe inner membrane of mitochondria
involuted, creates more surface area, more space
what does more space in inner membrane allow for
more space for localization of ETC and ATP synthase components
where else do we see double membrane organelle
chloroplast
what does electron transport lead to
leads to proton pumping across inner mitochondrial membrane
what are cristae
involuted membrane based structure, provides increase in SA that allows for more spacew
what does more space mean
more copies of ETC, ATP synthase complexes; more efficient, more functionality
what is proton gradient
means by which ATP synthase generates ATP by coupling endergonic process of making ATP w/ exergonic process of facilitated diffusion of protons thru F0 (part of ATP synthase)
how do we establish proton gradient
establish a concentration differential of H+ ions / protons
what is proton-motive force
describes [ ] differential across inner mitochondrial membrane (high [ ] of protons in intermembrane space)
where is higher concentration of protons
in intermembrane space
what does high [ ] of protons create in intermembrane space
low pH / acidic pH relative to mitochondrial matrix
proton motive force is a combo of
chemical potential and electric potential
chemical potential
concentration diff of protons across inner mitochondrial membrane
electrical potential
charge diff that arises b/c you have abundance of protons in intermembrane space relative to mitochondrial matrix
what does membrane potential describe
just describes a charge diff across membrane, one side vs. other
what aspects of proton motive force are important
both chemical potential (pH gradient / H+ ion concentration) and electrical potential
what are chemical and electrical potential important for
facilitated diffusion of protons thru F0 component
what is the charge difference gonna do to protons
will draw positive ions thru F0 component to the negatively charged side here
what is the concentration difference gonna do
via facilitated diffusion, things are gonna pas from high end of [ ] to lower end of [ ] gradient
how many complexes in ETC
4; complex I, II, III, IV
how is NADH oxidized in ETC
oxidized by donating its electrons and protons to complex I of ETC
where do we generate most of reducing power in cell respiration
TCA cycle
what do we generate from TCA, and how
NADHs, FADH2s from oxidation of glucose
what do these reduced electron carriers (NADH, FADH2) do
dump electrons off to ETC & flow of electrons
what happens as you go from complex 1, 3, 4 and 2 ,3 ,4
increased affinity for electrons
what are two ports of entry for electrons in ETC
one for NADH dumping electrons off to complex 1, second is succinate dehydrogenase in complex 2
describe the first port of entry (NADH in complex 1)
NADH dumps electrons to complex 1, electrons are fed into coenzyme Q pool, dumped off to complex III, transferred via cytochrome C to complex 4, and then to oxygen (reduce oxygen and form water)
what is coenzyme q
a lipophilic electron shuttler
what happens after NADH dumps electrons to complex I
electrons are fed into Q pool, coenzyme q
what happens after electrons go into coenzyme Q
dumped off to complex III
what happens after electrons go through complex III
transferred to complex 4 via cytochrome C
what transfers electrons from complex 3 to 4
cytochrome C
what happens after electrons go thru complex 4
electrons are donated/transferred to oxygen, results in reduction of O2 to H2O
describe second means of entry
succinate dehydrogenase (TCA cycle)
what does succinate dehydrogenase do
catalyzes a step in TCA cycle; oxidizes succinate to fumarate AND reduces FAD to FADH2
what happens to FADH2 produced by succinate dehydrogenase
electrons dumped off into q pool (cytochrome q), transferred down to complex 3, 4, and oxygen as final electron acceptor
what is final electron acceptor
oxygen
what is the importance of electron flow thru ETC?
represents release of energy
what are thermodynamics of electron flow thru ETC
exergonic process
what is direction of flow of electrons thru ETC favored by
increasing affinity for those electrons
describe increasing affinity for electrons
increasing affinities as you move from complex 1 to 3, 4, ; and complex 2, 3, 4
what does the increasing affinities create
thermodynamic waterfall; downhill flow of electrons
what happens as electrons drop into that waterfall
release of small amounts of free E
what happens to small amounts of E released in ETC
some released as heat, some will help pump protons
what is important besides electrons
protons (from H)
what happens to protons
pumped across inner mitochondrial membrane through parts of complexes 1, 3, 4
what complexes pump protons in ETC
complexes. 1, 3, 4
where does the E needed to pump protons across this membrane come from
flow of electrons down ETC
does it take E to pump protons into intermembrane space
yes
why does it take E to pump protons
cuz as you pump more protons, [ ] of protons in intermembrane space increases, making it harder
what happens to protons in intermembrane space as more gets pumped
accumulation of protons
what happens as those protons accumulate
we are pumping more, and working against concentration gradient at that point
so how do we pump protons against [ ] gradient
couple it to free E release achieved from transfer of electrons thru ETC
what are we coupling w/ ETC
we’re coupling the free E release from flow of electrons thru ETC w/ pumping of protons across inner mitochondrial membrane into intermembrane space
what happens to protons when we establish proton motive force
protons can diffuse back thru ATP synthase through F0
what part of ATP synthase can protons diffuse back through
F0 subunit
what are thermodynamics of flow of protons thru F0
exergonic
what does facilitated diffusion of protons thru F0 do
drives F1 subunit (catalytic component of ATP synthase)
what catalyzes formation of ATP from ADP and Pi
F1 subunit
describe thermodynamics of ATP formation from F1
endergonic (cuz we’re sticking a negative phosphate group onto negative ADP)
what does ATP formation require
input of energy
where does E needed for ATP come from
facilitated diffusion of protons thru F0
what does facilitated diffusion of protons thru F0 component do
drives conformational changes in F1 necessary to synthesize ATP
basically how do we get ATP production
couple electron flow to establishment of proton-motive force which leads to synthesis of ATP
what do electron transport and oxidative phosphorylation do
capture E in reduction potential of NADH and FADH2
what happens to energy as electrons travel thru ETC
energy is lost in small amounts
what is energy captured from reduced electron carriers used for
ATP production
what things does coupling depend on
1) sequential redox rxns that pass electrons from NADH to O2, 2) compartmentalization of these rxns in mitochondria, 3) generation of proton gradient
what 2 ways to synthesize ATP
substrate level phosphorylation, oxidative phosphorylation
what do you need whenever you make ATP
need an exergonic component to drive endergonic process of making ATP from ADP and Pi
where does free E to drive ATP synthesis come from in substrate level phosphorylation
high E intermediates; phosphorylate them, break that phosphate bond, phosphoryl group transfer potential of high E intermediate, releases E which helps facilitate transfer of phosphate group from high E intermediate to molecule of ATP
where does free E to drive ATP synthesis come from in oxidative phosphorylation
coupling establishment of PMF via electron flow; electrochemical gradient across membrane helps drive ATP synthesis via ATP synthase enzyme complex
what happens in the sequential redox reactions
electrons are being passed on to other complexes within ETC
what is directional transfer of electrons reflective of
increasing affinity that the different complexes have for those electrons