Biochem Flashcards
Define and correctly use the following terms:
Anaerobic and aerobic glycolysis
Anaerobic glycolysis–>Lactate (fast 2 ATP)
Aerobic glycolysis–>Pyruvate–>CAC—>ETC (slow)
Differences: Speed and amount of ATP produced, lactate can be toxic (removed by gluconeogenesis)
Define and correctly use the following term:
Rate limiting enzyme
Controls the overall flux of the pathway and activity of the pathway, independent of substrate and product concentration
Define and correctly use the following term:
Allosteric and covalent regulation
- Covalent regulation is via a +/- chemical bond…phosphorylation of an enzyme to reduce its activity (ex: glucagon on PFK-2)
- Allosteric regulation is by binding reversibly an effector molecule at a site other than the protein’s active site (ex: NADH, acetyl CoA, ATP, and FA on PDH)
What tissues are dependent on glucose as their primary energy source? (3)
- Red blood cells (anaerobic)
- Active skeletal muscle (anaerobic short-term, aerobic long-term)
- Brain
What are the key regulatory enzymes and committed steps in glycolysis? (3)
These enzymes catalyze reactions that are highly exergonic, and therefore, irreversible and rate-limiting.
Key enzymes:
- Hexokinase & Glucokinase (liver, B-cells of pancreas, lower affinity)
- Phosphofructokinase-1 (PFK-1): MOST IMPT, catalyzes the committed step
- Pyruvate kinase (PK): final step of glycolysis–>lactate or acetyl-CoA
What are the key regulatory enzymes and committed steps in the citric acid cycle? (4)
- Pyruvate dehydrogenase
- Citrate synthase
- Isocitrate dehydrogenase
- Alpha-ketoglutarate dehydrogenase
What is the effect of fructose 2,6-bisphosphate (F-2,6-BP) on glycolysis?
- Activator of PFK-1 (incr glycolysis)
- Produced by PFK-2
What is the effect of glucagon on glycolysis? What is this an example of?
Hint: released by pancreas when blood glucose is low
Blocks glycolysis via cAMP-dep protein kinase--> Phosphorylation of PFK-2--> Decr PFK-2 activity--> Decr F-2,6-BP--> Decr PFK-1
Ex of COVALENT regulation
T/F:
ATP and NADH reduce the activity of both glycolysis and the CAC
TRUE!
Describe the effects of NAD+ on the activity of the citric acid cycle
- CAC activity depends on the avail. of NAD+ (co-substrate for many of the dehydrogenases)
- Amount of NAD+ is determined by the rate of NADH oxidation
- NAD+ also activates PDH phosphatase
How does insulin promote glycolysis and the citric acid cycle?
(high glucose)
Glycolysis: Insulin reverses effects of glucagon by activating a protein phosphatase--> Dephosphorylates PFK-2--> Incr PFK-2 activity--> Incr PFK-1
CAC: Activates PDH phosphatase--> Dephos. PDH--> Incr PDH activity--> Incr production of acetyl-CoA from glucose, lactate, and alanine
Describe the effects of NADH, acetyl CoA, ATP, and FA on the activity of the citric acid cycle
*Allosterically inhibit PDH:
Stimulate PDH kinase–>
Phosphorylates PDH–>
Decr PDH activity
Citrate synthase activity is limited by avail. of what 2 substrates in the CAC?
-Acetyl-CoA and oxaloacetate
Accumulation of NADH inhibits what 2 enzymes in the CAC?
- Isocitrate dehydrogenase
- Alpha-ketoglutarate dehydrogenase
ATP inhibits what 2 enzymes in the CAC?
- Citrate synthase
- Isocitrate dehydrogenase
(allosteric inhib)
Calcium activates what 3 enzymes in the CAC?
- Isocitrate dehydrogenase
- Alpha-ketoglutarate dehydrogenaseq
How are glycolysis and the CAC linked?
PDH
Define and correctly use the following term:
Second messenger
cAMP
Define and correctly use the following term:
Reversible phosphorylation
Hormones (epi, glucagon, insulin) control reversible phosphorylation via cAMP
Ex: glycogen phosphorylase, and glycogen synthase
Define and correctly use the following term:
Fructose 2,6-bisphosphate
- Synthesized by PFK-2/F-2,6-BPase bifunctional enzyme
- PFK-2 catalyzes formation of F-2,6-BP
- F-2,6BPase catabolizes F-2,6-BP
Define and correctly use the following term:
Reciprocal regulation
Interlocking mechanisms that ensure that separate pathways of synthesis and degradation do not operate at the same time
Ex: pyruvate carboxylase and pyruvate dehydrogenase in gluconeogenesis
What are the key enzymes of glycogen degradation (glycogenolysis)? (5)
- Glycogen phosphorylase
- Transferase and debranching enzyme (alpha-1,6-glucosidase)
- Phosphoglucomutase (G1P to G6P)
- Glucose 6-phosphatase (G6P to Glucose) in the ER of liver, kidney, and intestine and requires G6P transporter to enter ER
What are the key enzymes of glycogen synthesis (glycogenesis)? (3)
- UDP-glucose pyrophosphorylase (G1P + UTP–>UDP-glucose)
- Glycogen synthase (a-1,4)
- Branching enzyme (a-1,6)
What are the effects of cAMP on glycogen metabolism?
ie, what are the sequence of events involving protein kinase, phosphorylase kinase, glycogen phosphorylase, and glycogen synthase?
Epinephrine and glucagon mediate actions through cAMP (2nd messenger)–>
cAMP activates protein kinase A–>
PKA phosphorylates glycogen synthase & phosphorylase kinase–>
Phosphorylase kinase phosphoylates glycogen phosphorylase–>
G1P
What is the effect of glucagon and epinephrine on glycogen metabolism?
-Trigger phosphorylation and stimulate glycogen breakdown
HOWEVER:
-Glucagon stimulates breakdown in the liver
-Epinephrine triggers breakdown mostly in skeletal m.
What is the effect of insulin on glycogen metabolism?
Triggers dephosphorylation and stimulates glycogen synthesis in liver and muscle
Activates protein phospatase 1–>
Dephos. glycogen synthase, phosphorylase kinase, & glycogen phosphorylase
What are the key enzymes in regulation of gluconeogenesis? (4)
Hint: All by-lass the irreversible kinase reactions of glycolysis
- Pyruvate carboxylase
- Phosphoenolpyruvate (PEP) carboxykinase
- Fructose 1,6-bisphosphatase (most impt!)
- Glucose 6-phosphatase
Explain how fructose 2,6-bisphosphate affects the key enzymes in gluconeogenesis
Allosterically inhibits F-1,6-BPase, therefore inhibiting gluconeogenesis.
F-2,6-BP promotes glycolysis.
Explain how FA oxidation affects the key enzymes in gluconeogenesis
Ex of reciprocal regulation!
Incr FA oxidation in liver–>
Incr acetyl CoA–>
Allosteric activation of pyruvate carboxylase–>
Inhibits pyruvate dehydrogenase–>
Blocks glycolysis and promotes glyconeogenesis
Explain how glucagon affects the key enzymes in gluconeogenesis
Promotes gluconeogenesis through phosphorylation of PFK-2/F-2,6-BPase via signal transduction:
Phosphorylation decr PFK-2 and incr F-2,6-BPase activity–>
Decr F-2,6-BP–>
Stimulates F-1,6-BPase–>
Incr gluconeogenesis &
Blocks PFK-1
Explain how insulin affects the key enzymes in gluconeogenesis
Reverses glucagon’s effects by dephosphorylation of enzymes
What are the 2 key enzymes in the regulation of glycogen metabolism? How are they regulated?
- Glycogen phosphorylase (phosphorylation incr. activity)
- Glycogen synthase (phosphorylation decr. activity)
Regulated by reversible phosphorylation w/ opposite effects
Ex of allosteric regulation in glycogen metabolism?
Glycogen synthase is allosterically activated by high levels of G6P
Dx and deficiency?
- Pts have hepatomegaly, elevated liver glycogen
- Hypoglycemia
- Hyperlipidemia
- Elevated serum lactate and urate
- Decr. serum pH
Von Gierke (GSD 1)
Deficiency in glucose 6-phosphatase OR glucose 6-phosphate transporter in liver
Dx and deficiency?
- Pts have limited ability to exercise and painful muscle cramps
- No buildup of serum lactate following exercise
McCardle (GSD 5)
Deficiency of glycogen phosphorylase in muscle
Dx?
- Deficiency of glycogen phosphorylase in muscle
- Pts have similar symptoms to GSD 1 but are milder
Hers (GSD 6)
Dx?
- Deficiency of phosphorylase kinase in liver
- Pts have mild hepatomegaly and hypoglycemia
GSD 9
Dx?
- Deficiency of protein kinase A (cAMP dependent) in liver
- Symptoms similar to GSD 6
GSD 10
Dx?
- Deficiency of glycogen synthase in liver
- Pts have fasting hypoglycemia and ketosis
- Increased serum lactate and glucose after eating
GSD 0