Bio-Tech #2 Flashcards

1
Q

Why do biochemist like to get their dick wet in water?

A
  1. ) Biological molecules assume their shape/function in response to the physical/chemical properties of water.
  2. ) The medium for the majority of biochemical reactions is water.
  3. ) Water itself can actively participate in many chemical reactions that support life. (ionic components of water: H+ and OH-)
  4. ) The oxidation of water to produce molecular oxygen (O2) is a fundamental reaction in photosynthesis.
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2
Q

Bond angle of water

A

104.5

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3
Q

tetrahedral bond angle

A

109.5

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4
Q

How do water molecules “associate”?

A

Through hydrogen bonds

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5
Q

What acts as the acceptor for a water-water hydrogen bond?

A

The lone pair of electrons on the oxygen

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6
Q

How many water molecules can attach to one single H2O molecule?

A

4! (1 per lone pair, 1 per H)

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7
Q

What acts as the donor for a water-water hydrogen bond

A

The waters hydrogen atoms.

The weakly acidic O-H bond acts as a hydrogen “donor” (D)

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8
Q

Why is water stable?

A

because of hydrogen bonding

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9
Q

What are some common functional groups that also form hydrogen bonds?

A

electrons on:
a carbonyl C=O,
a nirtogen =N-,
Water

Hydrogens on electronegitive atoms (O, N, F)

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10
Q

density of water vs ice

A

water: 1 g/mL
ice: 0.92 g/mL

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11
Q

Structure of ice

A

Ice is a crystal lattice of H-bond donors/acceptors tetrahedrally surrounded (bond angle of 109.5°)

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12
Q

whats good with water in its liquid phase?

A

Liquid water has rapidly fluctuating structure.

3- to 7-member rings (breaking and reforming every 2 x 10-11 seconds).

Reorients every 10^-12 sec

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13
Q

Why is water the “universal” solvent?

A

water doesn’t dissolve all solutes, but it dissolves more types of substances (and in greater amounts) than any other solvent.

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14
Q

What dissolves in water?

A

water dissolves more polar and/or charged molecules, (hydrophilic).

Nonpolar substances are virtually insoluble in water, which are (hydrophobic)

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15
Q

As the dielectric constant increases, the force between two charges _________

A

decreases.

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16
Q

How do “amphipathic” molecules interact with solvent?

A

H2O: tends to hydrate hydrophilic regions and exclude the hydrophobic regions.

Causes structurally-ordered aggregates.

17
Q

Amphiphiles

A

molecules with both polar and nonpolar regions

18
Q

clathrate” structures

A

ordered water molecules around nonpolar solutes. Not favorable!

19
Q

hydrophobic forces

A

Forces that stabilize structurally-ordered aggregates

relatively weak compared to H-bonds.

lack directionality.

important for the structural integrity of biological molecules and membranes!!!