bio cards Flashcards
nucleolus
dense structure in nucleus, site of rRNA synthesis. not surrounded by membrane. after assembly, subunits exported to cytoplasm to help with protein synthesis.
mitochondria
“power house of cell”. outer and inner phospholipid bilayer. inner membrane has cristae and houses proteins of electron transport chain. inner membrane = matrix (low H+ concentration) intermembrane space - high H concentration contain own circular dna and ribosomes. can produce some proteins
endosymbiotic hypothesis
mitochondria believed to have developed from early prokaryotic cells and formed a symbiotic relationship with ancestors of eukaryotes. mitochondria provided energy and the host cell provided nutrients and protection from the exterior environment
Mitochondrial inheritance
zygote receives all organelles from mother - mitochondrial DNA is inherited from mother (identical to mother)
ribosome
responsible for protein synthesis. large and small subunit composed of rRNA and proteins - can be free or bound to endoplasmic reticulum.
free ribosomes
synthesize proteins destined for cytoplasm, found in the cytoplasm
bound ribosomes
bound to ER. synthesize proteins destined for insertion into membrane or secretion outside cell
Endoplasmic reticulum
interior membrane layer is lumen smooth er- no ribosomes on surface, involved in lipid synthesis and detox of drugs and poisons rough er - involved in protein synthesis small regions of er bud off to form vesicles with newly made protein - transported to golgi apparatus
golgi apparatus
stack of membrane enclosed sacs b/w ER and plasma membrane. modifies and sorts proteins.
lysosomes
break down proteins, carbs, and nucleic acid. slightly acidic inside (pH 5) important for degrading bacteria/foreign parts and degadation of damaged cells
peroxisomes
have oxidative enzymes. catalyze rxn in which hydrogen peroxide is produced and degraded break down fats detoxify alcohol in liver could damage DNA or other parts of cell if not compartmentalized
cytoskeleton
provide framework for maintenance of cell’s shape involve: microfilaments - 2 strands of actin, involved in muscle contraction along with myosin intermediate filaments - fibrous proteins coiled into thicker cables - structural support of a cell microtubules - hollow rods made of tubulin. involved in mvmt of organelles and chromosomes, maintenance of cell shape, cell motility
diffusion
passive transport, no energy required, CO2, O2 nonpolar transported goes from high to low gradient
osmosis
passive, no energy required transports H2O down gradient
facilitated diffusion
passive, no energy req. moves polar mol. and ions down gradient requires carrier molecules
active transport
active, requires energy low to high gradient transports proteins - Na/K pump
anaerobic cellular respiration
Glucose+2ATP + 4ADP +2 NAD+ + 2 Pi → Glycolysis → 2 Pyruvate + 2 ADP +4ATP+2NADH+2H++2H2O → Pyruvate +NADH+H+→ Fermentation → Ethanol (yeast) +CO2 + Lactic Acid + NAD+
aerobic cellular respiration
Glucose+ 2ATP + 4ADP +2 NAD+ + 2 Pi → Glycolysis → 2 Pyruvate + 2 ADP +4ATP+2NADH+2H++2H2O → 2 Pyruvate +2CoA+2NAD
NAD+ + FAD
coenzyme that can accept high energy electrons during glucose oxidation (come as H-).
atp generated from their stored energy - gathered through electron transport chain
- accept hydride ions during glycolysis and krebs cycle, reduced to NADH and FADH2
- carried through electron transport chain on inner mitochondrial membrane - liberated to produce ATP
- liberation causes oxidation to NAD+ + FAD
release of energy for ATP-ADP
7 kcal/mol
oxidation
LEO - loss of electrons is oxidation
reduction
GER - gain of electrons is reduction
determining oxidation state
consider electronegativity of bonded atoms treat molecule as ionic with more EN atom taking all the electrons solve for oxidation state using eqtn: # v.e. - # e around atom (after considering EN)
Bacteria
prokaryotic - no nucleus or membrane-bound organelles
viruses
can’t carry out metabolism outside of host cell
bacteriophages
viruses that infect bacteria
fungi
lack chlorophyll. eukaryotic, have membrane bound organelles
cytosol
continuous compartment inside prokaryotes
phospholipid bilayer
hydrophilic heads (on exterior) hydrophobic tail (interior).
transfer of genetic info in prokaryotes
transformation- DNA taken up from environment, integrated into bact. genome transduction - bact. genes transferred from one bacterial cell to another by a virus conjugation - direct transferred b/w bact. by conjugation bridge
autoradiography -
uses radioactive molecules to trace and id cell structures and localize biochem activity - used to find location of synthesis of viral proteins
facilitated diffusion -
uses protein channel to move large, polar molecules across membrane - doesn’t require energy
mitochondrial DNA
circular, self replicating. allos mito. to be semiautonomous. can synthesize some of their own protein and replicate with binary fission
ribosomal subunits in pro vs. eukaryotes
subunits are different pro: subunits are 30S and 50S, eu: 40S and 60S
Na+/K+ ATPase
moves 3 Na ions out for every 2 K ions into cell.
enzyme-catalyzed reaction
rate of rxn increased by decrease in activation energy. enzymes not changed or consumed during course of rxn. overall delta G (free-energy change of rxn) remains unchanged in presence of enzyme
enzyme activity conditions:
max activity for enzymes around 37 C and pH 7.4 (normal body fluid pH)
pancreatic enzyme optimal pH
basic. like alkaline conditions of small intestine
apoenzyme -
devoid of necessary cofactor - catalytically inactive
negative feedback -
by limiting the activity of enzyme 1, the rest of the pathway is slowed.
glycolysis
happens in cytoplasm, can be anaerobic total output - 4ATP, uses 2ATP
Glucose+2ADP+2Pi + 2NAD+ → 2 Pyruvate + 2ATP + 2 NADH +2 H+ + 2H2O
fermentation
glycolysis plus reduction of pyruvate
produces NAD+, no new ATP
alcohol ferm: in yeast and bacteria - pyruvate to ethanol and NAD+
lactic acid ferm: done when oxy demand higher than supply -2x as many molecules of pyruvate and NAD as glucose; NADH builds up and not enough NAD+ -pyruvate reduced to lactic acid, NADH-NAD+
Cori Cycle
lactic acid converted back to pyruvate. amt of oxygen required to do this = oxygen debt.
Cellular Respiration Equation
C6H12O6+6O2→6CO2+6H2O+energy
- series of redox reactions
- reverse of photosynthesis equation
- energy lost in heat
- O is final receptor in long electron transport chain
Pyruvate Decarboxylation
- first step in aerobic respiration
- pyruvate transported into mitochondria and loses CO2
- Acetyl-CoA is intermediate - key in using fat, protein, and carb energy reserves.
- forms NADH, Acetyl Co-A, and CO2
Citric acid cycle
aka Krebs, (TCA)
- 2nd phase of aerobic resp.
- each turn of cycle produces 1 ATP
- generates high energy electrons carried by NADH and FADH2
- 1 Acetyl- CoA generated 3 NADH and FADH2
- cycle turns twice per molecule of glucose
- produces: 6NADH, 2FADH2, 2 ATP - coenzymes transport electrons to ETC in inner mito membrane