Bio/Biochem Flashcards
What happens in geminal part of lymph node?
affinity maturation and somatic hypermutation occurs in germinal part of lymph node
What happens at a palindromic sequence when cutting?
Cutting palindromic will make last 3 nucleotides stay and add 3 new ones honestly I don’t understand the answer at all
What happens over time with antibodies against a bacteria?
Over time, antibodies will increase affinity for bacteria
What does affinity maturation do?
Affinity maturation will make B cells have more affinity for antigen
What does 1 band on SDS PAGE represent?
SDS PAGE with 1 band can be multiple subunits or 1 unit
A researcher compares two antibodies that recognize the same antigen, even though they are made by different animal species. How will these antibodies differ?
Constant region of antibodies can differ but recognize same antigen
What do competitive inhibitors block?
Competitive inhibitors block substrate and Transition state
Where do trypsin and chymotrypsin work?
Trypsin works in stomach, chymotrypsin in small intestine
How to solve given V initial and substrate?
Given S and V initial, use Merchailis menton equation
How are zymogens activated?
Zymogens activated by pH, hydrolytic cleavage, and conformational changes
Effect on Vmax by increasing substrate concentration?
Vmax is not affected by substrate concentration
How are enzymes activated?
Enzyme activates by pH changing. Hydrolytic cleavage will not occur due to pH changing. Only by oxidation/reduction
Fibroblast function?
Fibroblasts make collagen
Endocrine vs exocrine?
endocrine release hormones into blood, exocrine release digestive enzymes
Difference between sequence and fully folded protein?
When comparing 2 proteins, when one is peptide sequence, one is fully folded protein, they differ because tertiary interferes
FSH in blood?
FSH can go in bloodstream without a transport protein and remain soluble
enzyme is more effectively inhibited in uncompetitive when?
enzyme is more effectively inhibited in uncompetitive when substrate concentration increases (only bind to ES complex) or inhibitor concentration decreases
would you use probe to locate transcript?
using a probe to locate a transcript is ineffective because its in cytoplasm
what do nuclear proteins need?
nuclear proteins require nuclear localization domain, DNA binding domain. Saying something is a homodimer means you need protein binding domain. do not need signal sequence domain
nuclear factors function?
nuclear factors differ in each cell type and can control regulation. Not the promotor, enhancer, or gene
How does SDS PAGE separate?
SDS PAGE does not separate based on charge. only by size. Isoelectric focusing and ion exchange do separate based on charge.
Inducer function?
inducer binds to repressor to start transcription in a negative inducible operon. activator binds to recruit promoters to start transcription
f plasmid function?
f plasmid used in conjugation to separate DNA not being incorporated into bacterial DNA
amitotic division result?
amitotic divisions result in unequal distribution of chromosomes
macronuclues function?
macronucleus is used to provide proteins for everyday functioning. not involved in meiosis
Where would proteins in golgi go if they traveled retrograde?
back to RER becasue retrograde means go backwards
Passage implies most strongly?
Look for purpose of experiment
Putting mouse antibody in human won’t work why?
Human body would think of the antibodies as foreign and have immune repsonse to them.
Cell goes into endothelium how?
Must still be bound even with mutation
How many electrons can cytocrome c carry?
1 because cycle between ferrous and ferric state
Best primer to use?
Has most GC content and GC at 5’ and 3’ end
Effect of increased insulin?
decrease blood glucose levels
Increase substrate effect on Km?
no effect
Changing AA from D to L?
would inhibit synthesis
Nervous system response when fewer pigment molecules are available?
Fewer signals of weakly perceived signals are sent to brain. Not the same number of signals.
Proteins affected by color blindness?
Visual receptors in the retina (photoreceptors here)
How to know if there is significant difference?
Look for indication
If you don’t know how to answer question?
Look at chart
With no oxygen, which is not produced?
Acetyl Coa because lactate not transported to mitochondria
Cl- more in systemic arteries or veins?
Veins because more HCO3- in veins
Effect of substituing proline for alanine?
Affect secondary structure
Enzyme used for activating protein?
Protease
Enzyme mutated to have higher affinity for cooperative site will affect reaction how?
Original reaction will occur at a slower rate due to conformational changes of enzyme
Hydrogen bonds are in which protein structure?
Secondary, tertiary is characterized by hydrophobic effects
Polypeptide 4 amino acids long, include start or stop codon?
Include start codon only
Denature over 60% of strand of DNA?
Only part wil reanneal
eukaroytic non coding RNA includes?
microRNA, snoRNA, tRNA, rRNA, but not mRNA/ hnRNA
Nucleic acid that can catalyze reactions?
RNA only, not DNA
G proteins active when?
Only when GTP is bound
Tyrosine kinase phosphorylated can bring signal amplification because?
ample time for the signaling proteins to be activates by phosphorylated receptor
Mito membrane made permeable affects apoptosis how?
Cytochrome c goes to cytosol
Best way to decrease serum cholesterol levels?
Limit the rate limting step in cholesterol synthesis
How steriod hormones transport?
Bind to cystolic receptor to enter nucleus
Changing from alanine to cysteine would affect tertiary structure of protein how?
Change polarity because cysteine is negatively charged polar
Polar residues will be located on outside or inside when interacting with oil?
Inside because do not want polar interactions with oil
Hydrogen bonding of Glu occur with?
NH of another residue. Glu is -COO not COOH at physiological conditions. There is no COOH in the backbone of a peptide
Is meiosis 1 or 2 heterotypic? When does crossing over occur? Is there an S phase in meiosis 1 and 2?
Meiosis 1 is heterotypic (reduces from 2n to n) Crossing over only occurs in meiosis 1. There is no S phase in meiosis 2
Cyclin and cyclin dependent kinase functions?
Necessary for mitosis to occur
Progesterone spike when?
Ovulation and forming corpus luteum
Meiosis 1 result with males?
Make secondary spermatocytes. Sister chromatids still attached
Order in which cells form after fertilization?
Morula, blastula, gastrula
Notochord comes from which germ layer? Spinal chord?
Notochord comes from mesoderm, develops in the vertebral column. spinal chord comes from ectoderm
blastopore forms what?
mouth or anus
Greater amount of wet mass on graph shows?
More solvation
Tertiary structure includes?
covalent interactions between constituent amino acids (disulfide bonds), hydrophobic effect, and ionic bonds between side chains
Given a protein similar to one in experiment, results indicate?
Results would be similar to the one from passage
Given that silicon oxide absorbs polar amino acids, which would be best?
Choose amino acids that are all polar
Charge of something with pka of 3 and 7 at pH 2?
ERROR!
Protein is 5*10^4 amu, how many amino acids in it?
1 AA= 110 Da= 1amu. 5*10^4 amu= 50kDa. 50000 Da/110Da= 450
A person’s BP is high sitting, how would it change laying down?
Would decrease BP because do not have to pump blood against gravity