Basic Micro Flashcards
Invented the first compound microscope in1597
Zacharias Janssen
suggested to be first to observe microorganisms; 20 years before Hooks, 29 years before leeuwenhoek
Athanasius Kirche
create compound microscope in 1676 “wee animalcules”
Antonie van leeuwenhoek
“cells” in cork, “elongated stalks” fungi, 30x compound microscope 1665
Robert Hooke
Author of meat in jar experiment 1668
Francesco Redi
Author of mutton broth in flask, unsealed boiling 1745
John Needham
Redone mutton broth experiment, sealed boiling 1768
Lazzaro Spallanzani
debunked spontaneous generation via passing air through strong acid
Franz Schultze
debunked spontaneous generation via passing air through red-hot tubes
Theodor Schwann
debunked spontaneous generation via filtering air through sterile cotton wool 1850
Georg Friedrich Schroder
Theodor von Dusch
Autho of Swan-neck flask experiment, prroving life did not arise from non-life 1822-1895
Louis Pasteur
Delivered the final blow against spontaneous generation; dust carries microorganisms; provided evidence for the existence of heat-resistant bacteria 1820-1893
John Tyndall
“Disease are caused by specific agents called germs”
Germ theory of disease
“disease was caused by invisible living creatures” 1478-1553
Girolamo Fracastoro
showed that Beauveria bassiana (fungi) cause silkworm disease 1773-1856
Agostino Bassi
showed that the great potato blight of ireland was caused by Phytophthora infestans (fungus-like) 1845
Miles Joseph Berkeley
smut and rust fungi cause cereal crop disease; Founding father of plant pathology 1853
Heinrich Anton de Bary
savior of mothers; asepsis
Ignaz Philipp Semmelweis 1861
used phenol or carbolic acid in surgical dressing and heat- sterilized surgical instruments; Father of Antiseptic Surgery 1867
Joseph Lister
showed that the pebrine disease of silkworms was caused by Nosema bombycis (protozoa)
Louis Pasteur
established the relationship between B. anthracis and anthrax, Tuberculosis, cholera
Robert Koch
State the Principles of Koch Postulates
- The suspected causative agent must be absent from all healthy organisms but present in all diseased organisms.
- The causative agent must be isolated from the diseased organism and grown in pure culture.
- the cultured agent must cause the same disease when inoculated into a healthy susceptible organism.
- The same causative agent must then be reisolated from the inoculated diseased organism
The informal “vaccination” before vaccines were developed
variolation
Diseases of the vaccines created by Pasteur and his co-workers
chicken cholera, anthrax, rabies
Developed porcelain bacterial filterer 1851-1908
Charles Chamberland
Tobacco mosaic disease caused by an infectious agent smaller than a bacterium he called “virus”1898; “contagium vivum fluidum”; one of the founders of virology
Martinus Beijerink
developed 606th compound SALVARSAN; organic arsenal used to treat syphilis
Paul Ehrlich
demonstrated role of yeasts in fermentation; alcohol fermentation by yeasts; lactic acid fermentation by bacteria
Louis Pasteur
discovered the existence of heat-resistant bacterial endospores
Ferdinand Cohn
studied soil and soil microorganisms; developed enrichment cultures and selective media
Sergei Winogradsky
Martinus Beijerink
Discovered nitrogen fixation
Martinus Beijerink
Discovered lithotophy and chemoautotrophy
Sergei Winogradsky
microscope that uses light waves and mirrors
simple, compound/complex light microscopes
microscope that has higher magnification and resolving power, uses electron beams as energy source, for <0.2mm objects, in vacuum
electron microscope
Light microscope; darker objects; bright micro field; for gross morphology
bright field
light microscope; dark micro field; luminous objects; for invisible, cannot be stained, and distorted by staining specimen
dark field
light microscope; based on refractive indices; detailed examination for internal structure
Phase contrast
Light microscope; based on refractive indices; no diffraction halo; 3D appearance
differential interference contrast
light microscope; detection of immunological reactions ; uses fluorochromes; visualize specimen that fluoresce
fluorescence
light microscope; use for thick specimen like biofilms; to visualize structures
confocal
light microscope; to examine living cells within intact issues
two-photon
electron microscope; ultrastucture in thin section of cells; resolution up to atomic level of thinner objects; examine viruses
TEM
electron microscope; surface features; reveals 3D image
SEM
organic compounds carrying chromophoric ions; provides increase in contrast for internal and external cell structure visualization
Dye/ stains
Types of stains
basic/positively-charged, acidic/negatively charged, neutral
staining type; only one dye
simple staining
staining type; one dye; cells same color as dye
positive/direct simple staining
staining type; one dye; cells are colorless or luminous
negative/ indirect simple staining
basic dyes/ positive stains
crystal violet, malachite green, methylene blue, safranin
acidic dye/ negative stains
acid fuchsin, eosin, rose bengal, india ink, nigrosine
stain type; 2 or more dyes/ reagents; ex gram stain, acid-fast
differential staining
makes dye less soluble to adhere to cell walls
mordant- iodine
differential staining; for diagnosis of tuberculosis
acid fast staining; Ziehl-Neelsen, kinyoun
differential staining; for capsules, endospores, flagella, storage granules
structural staining
capsule staining; negative; bacterial cells resuspended in antiserum that contains antibodies raised against the capsule
quellung reaction
capsule staining; cv as primary stain, decolorizing agent and counterstain 20% copper sulfate
Anthony’s method
capsule staining; congo red as ph indicator; phenol+ CH3COOH+FeCl3, phenol+ FeCl3 (acid fuchsin)
Maneval’s staining
culture; population arose from a single cell
pure/ axenic culture
method to increase population of microorganisms by providing nutritional and physical requirements
cultivation
types of culture media based on physical state
liquid/ broth, semi-solid 0.1-0.5% solidifying agent, solif 1.5-2.0% sol a
types of culture media based on chemical composition
synthetic, complex
types of culture media according to principal function, purpose or application
general purpose, differential
isolation technique; visible colonies
plating
isolation technique; for isolation of unusual physiological types of microorganisms which are present in small numbers/ grow slowly; isolation by combining nutrient and physical conditions
enrichment culture
isolation technique; used if desired microorganisms is present at higher level
serial dilution
isolation technique; use micropipette/ microprobe to physically pick a single cell to transfer to an agar medium
single-cell isolation technique
isolation technique; for samples with low population
membrane filter technique
culture preservation; considers time interval of transfers
periodic transfer to fresh media
culture preservation; to limit availability of oxygen thereby reducing metabolic rate
overlaying cultures with mineral oil
culture preservation; rapid drying in frozen state
lyophilization
culture preservation; uses cryoprotective agent, -196C
freezing with liquid nitrogen
culture preservation; samples grown on sterile paper discs with nutrient and air dried, use of calcium chloride
drying
complete destruction of all microorganisms and endospores
sterilization
killing, inhibition, or removal of pathogenic microorganisms
disinfection
reduction of microbial population to levels considered safe by public health standards
sanitization
carry out antisepsis, effective against microorganisms does not damage tissues
antiseptics
mechanical removal + use of mild chemicals on tissues or skin
degerming
example of moist heat method
pasteurization, boiling, steam under pressure, tyndallization
example of dry heat application
direct flame
microbial control ; decreased enzyme activity;decrease metabolic activity
refrigeration
microbial control; exclusion of microorganisms; for heat sensitive solutions
filtration
microbial control; irreversible denaturation of enzymes and structural proteins
moist heat
microbial control; oxidation of molecular components
dry heat- hot air
microbial control; lowers water activity; microbiostasis
dessication
microbial control; lowers water activity; microbiostasis; rapid freezing then sublimation
lyophilization
microbial control; osmotic shock
addition of solutes
microbial control;breaks DNA double strand; for materials that cannot be autoclaved
ionizing radiation
microbial control; formation of thymine dimers;poor penetrating power-surface disinfection
non-ionizing radiation
microbial control; thymine dimers and oxidation ROS
radiation- sunlight
microbial control; antimicrobial agent; substance that kills microorganisms
cidal; bactericidal, fungicidal etc
microbial control; antimicrobial agent; prevent growth of microorganisms
static; bacteriostatic, fungistatic etc
microbial control; membrane disruption and protein denaturation
phenol and phenolics
microbial control; phenol and phenolics; inhibits fatty acid biosynthesis pathway; banned by USFDA
triclosan
microbial control; protein denaturation; inhibit cell metabolism; disrupts cell membrane; lyse cell; cidal to enveloped virus
alcohol
microbial control; group VIIA
halogens
microbial control;halogens; oxidation of celllular components
iodine, chlorine, bleach
microbial control;halogens; interferes with bacterial metabolism ; bacteriostatic
fluorine/fluoride
microbial control; protein denaturation; oligodynamic, no selective toxicity
heavy metals
microbial control; protein denaturation; oligodynamic, no selective toxicity; used to treat syphilis
mercury
microbial control; protein denaturation; oligodynamic, no selective toxicity; combined with antibiotics; coating in med supplies
silver
microbial control; nucleic acid and enzyme inactivation
alkylating agents; aldehydes, ethylene oxide
microbial control; oxidation of cellular components ; disinfectant/ antiseptic
peroxygens, hydrogen peroxide
measuring microbial control; time needed to kill a given number of organisms at specifc temp
thermal death time
measuring microbial control; time required to destroy 90% of organisms
decimal reduction time; D value
measuring microbial control; smallest amount of agent needed to inhibit the growth of a test organism
MIC
classification system; based on arbitrary chosen criteria
artificial
classification system; arranges organisms into groups whose members share many characteristics.
natural
classification system; natural classification; based on mutual similarity of the organism phenotypes
phenetic system
classification system; based on evolutionary relationships rather than general resemblance
phylogenetic or phyletic system
2 kingdom scheme; carolus linnaeus 1735
animalia, vegetabilia
3 kingdom system; primitive and advanced forms
Ernst Haeckel
2 empire system; prokaryote and eukaryote 1937
Edouard Chatton
the 4th kingdom in the 4 kingdom scheme by Herbert Copeland 1938
Monera
5 kingdom scheme
Robert Whittaker
6 kingdom Scheme 1977
Carl Woese
Woese, Kandler and Wheelis 1990
3 Domains of life
ubiquitous; conserved for identification yet variable to determine evolutionary relationships
rRNA
system used in nomenclature
Binomial nomenclature
Nutritional type; energy source sunlight; carbon source C02
photoautotroph
Nutritional type; energy source sunlight; carbon source organic compounds
photoheterotroph
Nutritional type; energy source inorganic chemicals; carbon source C02
chemoautotroph
Nutritional type; energy source organic compounds; carbon source organic compounds
chemoheterotroph
inclusion bodies; stored carbon and energy source
glycogen granules
inclusion bodies; lipid-like, stored carbon and energy source
PHB
inclusion bodies; stored nitrogen source polymer of amino acids, produced in times of stress
cyanophycin
inclusion bodies; contains enzymes involved in carbon fixation
carboxysomes
inclusion bodies; present in Bacillus thuringiensis
crystal proteins
inclusion bodies; impermeable to water and solutes but not to gases, for buoyancy
gas vacuoles
inclusion bodies; not an energy storage, orientation for favorable conditions
magnetosomes
inclusion bodies; inorganic; metachromatic polyphosphate reservoirs
volutin