Bacteriology Flashcards
Do not Gram stain well - which organisms?
“These Microbes May Lack Real Color” -Treponema (too thin need darkfield and fluorescent antibody staining) -Mycobacteria (high lipid content in cell wall detected by carbolfuchsin in acid fast stain) -Mycoplasma (no cell wall) -Legionella pneumophila (primairy intracellular - need silver stain) -Rickettsia (intracellular parasite) -Chlamydia (intracellular parasite, lacks muramic acid in cell wall)
Giemsa stain - which organisms?
“Certain Bugs Really Try my Patience” -Chlamydia -Borrelia -Rickettsiae -TRYpanosomes -Plasmodium
PAS (periodic acids-Schiff) stains what component of organism?
STAINS GLYCOGEN
Ziehl_Neelsen (carbol fuchsin) stains what organsims?
-acid-fast stain -Nocardia -Mycobacterium
India Ink stains what organism?
-Cryptococcus neoformans
H influenzae media is
chocolate agar with factors V (NAD+) and X (Hematin)
N gonorrhoeae and meningitidis media:
-thayer-martin (or VPN) media: -Vancomycin (inhibits gram+ organisms) -Polymyxin (inhi gram- organisms except neiseria -Nystain (inh fungi) “to connect to Neisseria please use your VPN client”
b pertussis media:
-bordet-engou (potato) agar -“BORDET for BORDETella”
C diphtheriae media
tellurite agar - Loffler medium
M tuberculosis media
Lowenstein-Jensen agar
M. pneumoniae media
Eaton agar requires cholesterol
Lactose-fermenting enterics media
-pink colonies on MacConkey agar (fermentation produces agar=pink colony) -E Coli grown on eosin-metylene blue (EMB) agar as colonies with green metallic sheen
Legionella media
charcoal yeast extract agar buffered with cysteine and iron
Fungi
-SABouraud agar “SABs a FUN-GUY”
Obligate aerobes - do what to make ATP? examples?
-need O2 to make ATP “Nagging Pests Must Breathe” -Nocardia -Psuedomonas aeruginosa -MycoBacterium tuberculosis
obigate anaerobes - do what to make ATP? Examples?
-do not use O2 for ATP production “Anaerobes Can’t Breathe Air” -Clostridium -Bacteroides -Actinomyces
What drug type is ineffective against obligate anaerobes and why?
-aminO2glycosides -this antibiotic requires O2 to enter into bacterial cell
Obligate Intracellular organisms:
“stay inside (cells) when it’s Really Cold” -Rickettsia -Chlamydia
Which organisms CANT MAKE THEIR OWN ATP?
-Rickettsia and Chlamydia (obligate intracellular)
Faculative intracellular organisms:
“Some Nasty Bugs May Live FaculativeLY” -Salmonella -Neisseria -Brucella -Mycobacterium
Encapsulated bacteria examples:
“SHiNE SKiS” -Strep pneumoniae -Haemophilus influenzae type B -Neisseria meningitidis -Escherichia coli -Salmonella -Klebsiella pneumoniae -group B Strep
Catalase + organisms
“you need PLACESS for your CATs” -Pseudomonas -Listeria -Aspergillus -Candida -E Coli -S aureus -Serratia -CAT=catalase degrades H202 that we produce to protect our bodies
NADPH oxidase deficient individuals -info
-cant make H202 (oxidative burst with NADPH oxidase) = gchronic granulomatous disease = recurrent infections with catalase + organisms
urease positive organisms:
“CHuck norris hates PUNKSS” -Cryptococcus -H pylori -Proteus -Ureaplasma -Nocardia -Klebsiella -S epidermidis -S Saprophyticus
pigment producing bacteria examples and colors
-“Israel has YELLOW SAND” = Actinomyces israelii - yellow sulfur granules composed of filaments of bacteria -S aureus - YELLOW pigment - “aureus means GOLD in latin” -Peudomonas AERUGinosa - blue-GREEN pigments -“AERUGula is GREEN” -Serratia MARCESCENS -RED pigment - “think RED MARASCHINO cherries”
Bacterial virulence factors (3) - what do they do?
-PROMOTE EVASION OF HOST IMMUNE RESPONSE -protein A = binds Fc region of IgG = prevents opsonization and phagocytosis - expressed by S Aureus -IgA protease = enzyme that cleaves IgA - secreted by S pneumoniae, H Influenzae type B and Neisseria (SHiN) in order to colonize respiratory mucosa -M protein = helps prevent phagocytosis - expressed by group A streptococci
-protein A is what? does what? and what organism(s)?
- bacterial virulence factor -binds Fc region of IgG -prevents opsonization and phagocytosis - expressed by S Aureus
-IgA protease is what? does what? and what organism(s)?
- bacterial virulence factor enzyme that cleaves IgA -secreted by S pneumoniae, H Influenzae type B and Neisseria (SHiN) in order to colonize respiratory mucosa
-M protein is what? does what? and what organism(s)?
- bacterial virulence factor -helps prevent phagocytosis - expressed by group A streptococci
bacteria that inhibit protein synthesis
-corynebacterium diphtheriae -pseudomonas aeruginosa -shigella spp -Enterohemorrhagic E Coli (EHEC - including O157:H7 strain)
-corynebacterium diphtheriae 1) toxin? 2) mechanism? 3) manifestation?
1) diphtheria toxin (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2) inactivates EF-2 - elongation factor 3) pharyngitis with pseudomembranes in throat; severe lymphadenopathy (bull neck)
-pseudomonas aeruginosa 1) toxin? 2) mechanism? 3) manifestation?
1) Exotoxin A (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2) inactivates EF-2 - elongation factor 3) host cell death
-shigella spp 1) toxin? 2) mechanism? 3) manifestation?
1) Shiga toxin (ST) (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2) inactivates 60S ribosome by removing adenine from RNA 3) GI mucosal damage –> dysentery ST also enhances cytokine release = hemolytic uremic syndrome (HUS)
-Enterohemorrhagic E Coli (EHEC - including O157:H7 strain) 1) toxin? 2) mechanism? 3) manifestation?
1) Shiga-like toxin (SLT) (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2) inactivates 60S ribosome by removing adenine from RNA 3) SLT enhaces cytokine release = HUS unlke Shigella EHEC does not invade host cells
bacteria that increase fluid secretion:
-Enterotoxigenic E Coli (ETEC) -Bacillus anthracis -Vibrio cholerae
-Enterotoxigenic E Coli (ETEC) 1) toxin? 2) mechanism? 3) manifestation?
1a) Heat-LABILE toxin (LT) - (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2a) overactivates adenylate cyclase (Increase cAMP) –> increase Cl secretion in gut and H20 efflux 1b) Heat-STABLE toxin (ST) 2b) overactivates guanylate cyclase (increase cGMP) –> decrease resorption of NaCl and H20 in guy 3) watery diarrhea; “LABILE in the Air (Adenylate cyclase)” “STABLE on the Ground (Guanylate cyclase)”
-Bacillus anthracis 1) toxin? 2) mechanism? 3) manifestation?
1) Edema factor 2) mimics the adenylate cyclase enzyme (increase cAMP) 3) responsible for characteristic edematous borders of black eschar in cutaneous anthrax
-Vibrio cholerae 1) toxin? 2) mechanism? 3) manifestation?
1) Cholera toxin (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2) overactivates adenylate cyclase (increase cAMP) by permanently activating Gs –> increase Cl secretion in gut and H2O efflux 3) Vluminous “RICE-water” diarrhea
bacteria that inhibit phagocytic ability:
-bordetella pertussis
-bordetella pertussis 1) toxin? 2) mechanism? 3) manifestation?
1) Pertussis toxin (A-B toxin=B-binds and A is active and attaches to ADP-ribosyl) 2) overactivates adenylate cyclase (increase cAMP) by disabling Gi –> impairs phagocytosis to permit survival 3) WHOOPING COUGH - child coughs on EXPIRATION and WHOOPS on INSPIRATION Can cause 100-day cough in adults
bacteria that inhibit release of neurotransmitter
-clostridium tetani -clostridium botulinum
-clostridium tetani 1) toxin? 2) mechanism? 3) manifestation?
1) tetanospasmin 2) protease that cleaves SNARE proteins required for neurotrans release 3) spastricity, risus sardonicus and “lockjaw” toxin prevents release of INHIBITORY (GABA and glycine) neurotransmitters from renshaw cells in spinal cord
-clostridium botulinum 1) toxin? 2) mechanism? 3) manifestation?
1) botulinum toxin 2) protease that cleaves SNARE proteins required for neurotrans release 3) flaccid paralysis, floppy baby toxin prevents release of STIMULATORY (ACh) signals at neuromuscular junctions
bacteria that lyse cell membranes
-clostridium perfringens -Streptococcus pyogenes
-clostridium perfringens 1) toxin? 2) mechanism? 3) manifestation?
1) alpha toxin 2) produces alpha toxin - phospholipase (lecithinase) that degrades tissue and cell membranes 3) degredation of phospholipids –> myonecrosis (gas gangrene) and hemolysis (double zone of hemolysis on blood agar)
-Streptococcus pyogenes 1) toxin? 2) mechanism? 3) manifestation?
1) streptolysin O 2) degrades cell membrane 3) lyses RBC - contributes to beta hemolysis host antibodies against toxin (ASO) used to diagnose rheumatic fever (DO NOT CONFUSE WITH IMMUNE COMPLEXES OF POSTSTREPTOCOCCAL GLOMERULONEPHRITIS)
bacterial that have superantigens that cause shock
-staphylococcus aureus -streptococcus pyogenes
-staphylococcus aureus 1) toxin? 2) mechanism? 3) manifestation?
1) toxic shock syndrome toxin (TSST-1) 2) bring MHC II and TCR in proximity to outside of antigen binding site to cause overwhelming release of IFN-gamma (y) and IL-2 = SHOCK 3) toxic shock syndrome: fever, ras, shock-other toxin cause scalded skin syndrome (exfoliative toxin) and food poisoning (enterotoxin)
-streptococcus pyogenes 1) toxin? 2) mechanism? 3) manifestation?
1) Exotoxin 2) bring MHC II and TCR in proximity to outside of antigen binding site to cause overwhelming release of IFN-gamma (y) and IL-2 = SHOCK 3) toxic shock syndrome: fever, rash, shock
ENDOTOXIN is what and causes?
-Its a LPS found in outer membrane of gram neg bacteria (cocci and rods) -activates macrophages (IL1-fever, TNF-fever and hypotension, nitric oxide-hypotension) -activates complement (C3a-hypotension & edema; C5a-neutrophil chemotaxis) -activates tissue factor (coagulation cascade –> DIC)
ENDOTOXIN mnemonic?
E=edema N=nitric oxide D=DIC/DEATH O=Outer membrane T=TNF-alpha O=O-antigen X=eXtremely stable I=IL-1 N=Neutrophil chemotaxis
5 bacterial toxins that are encoded in a lysogenic phage:
“ABCDE” -shigA-like toxin -Botulinum toxin -Cholera toxin -Diphtheria toxin -Erythrogenic toxin of Strep pyogenes
Staphylococcus Aureus - 1) Gram stain, virulence factor, and appearance 2) commonly colonizes the… 3) catalase + or - ? 4) coagulase + or - ?
1) G+, Protein A (finds Fc-IgG inhibiting complement and phagocytosis), cocci in clusters 2) NOSE 3) Catalase + 4) coagulase +
Staphylococcus Aureus - causes what potential issues?
1) Inflammatory disease - skin infections, organ abscesses, pneumonia (often after influenza virus infection), endocarditis, and osteomyelitis 2) Toxin mediated disease - toxic shock syndrome (TSST-1), scalded skin syndrome (exfoliative toxin), rapid-onset food poisoning (enterotoxins) 3) MRSA infection (methicillin resistant S. Aureus) - cause of nosocomial and community acquired infections, resistant to methicillin and nafcillin because of altered penicillin-binding protein
Staph Aureus toxic shock syndrome mechanism for illness?
-TSST-1 superantigen binds to MHC II and T-cell receptor = polyclonal t-cell activation -Presents as fever, vomiting, rash, desquamation, shock, & end organ failure. -vaginal or nasal tampons predispose to TSS
Staph Aureus food poisoning - how get sick? incubation period?
-ingestion of preormed toxin - NOT destroyed by cookied (heat stabile) -incubation period is short (2-6hrs)
Staphylococcus epidermidis - 1) antibiotic lab testing? 2) catalase +/-? 3) coagulase +/-? 4) infects what objects and produces what kind of appearance grossly? 5) normal flora? if yes, where?
1) novobiocin sensitive 2) catalase + 3) coagulase - 4) infects prosthetic devices and intravenous catheters –> produces adherent biofilms 5) yes - of the skin
Staphylococcus saprophyticus 1) antibiotic lab testing? 2) catalase +/- ? 3) coagulase +/- ? 4) causes what illness?
1) novobiocin resistant 2) catalase + 3) coagulase - 4) second most common cause of uncomplicated UTI in young women (E Coli is first)
Streptococcus pneumoniae- 1) Catalase test? 2) other distinguishing lab test? 3) capsule y/n and bile solubility? 4) antibiotic test? 5) gram stain?
1) Catalase - 2) alpha hemolytic (Green partial hemolysis) 3) capusle YES and bile soluble (lysed by bile) 4) Optochin sensitive 5) gram +
Streptococcus pneumoniae- 1) most common cause of: 2) appearance grossly? 3) what is needed for virulence?
1) “s pMOPS are Most OPtochin Sensitive” M-Meningitis O-Otitis Media (children) P-Pneumonia S-Sinusitis 2) lancet shape gram positive diplococci 3) Capsule is needed for virulence
Rusty sputum in individual - causative organism?
streptococcus pneuomniae
Steptococcus pneumoniae causes sepsis in individuals with what conditions?
sickle cell anemia and patients with a splenectomy
viridans group sreptococci- (strep mutans) 1) go through lab testing in head… 2) bile sensitivity? 3) capsule y/n?
1) gram + –> catalase - –> hemo alpha –> optochin resistant 2) bile insoluble - not lysed 3) no capsule
viridans group streptococci- (strep mutans)- 1) normal flora where? 2) usually cause what problem?
1) normal in the mouth 2) cause dental caries
viridans group strep- streptococcus sanguinis 1) causes what? 2) go through lab testing in head…
1) subacute bacterial endocarditis at damaged heart valves- makes dextrans which bind to fibrin-platelet aggregates on damaged heart valves “sanguis = blood in latin” 2) gram + –> catalase - –> hemo alpha –> optochin resistant
streptococcus pyogenes- 1) what group strep? 2) go through lab testing in head… 3) has what virulence factor- what does this factor do?
1) group A strep 2) Gram + –> catalase - –> beta-hemolytic –> bacitracin sensitive 3) M-protein - prevents phagocytosis
streptococcus pyogenes- 1) causes what illnesses in body? 2) what test detects recent S pyogenes infection?
1) pyogenic - pharyngitis, cellulitis, impetigo; toxigenic - scarlet fever, toxic shock-like syndrome, necrotizing fasciitis; immunogenic - rheumatic fever, acute glomerulonephritis 2) ASO titer
JONES criteria for rheumatic fever (O is in a heart shape)
J-Joints - polyarthritis O- (heart shape O for mnemonic) carditis N- nodules (subcutaneous) E- Eryhtema marginatum S- Syndenham chorea
pharyngitis can result in rheumatic fever and glomerulonephritis with which organism?
Strep pyogenes
scarlet fever - 1) presentation 2) causative organism?
1) rash with sandpaper like texture strawberry tongue circumoral pallor 2) strep pyogenes
Streptococcus agalactiae- 1) which group strep? 2) go through lab testing in head… 3) hippurate test +/-? 4)
1) group B strep 2) Gram + –> catalase - –> beta-hemolytic –> bacitracin resistant
strep agalactiae - 1) colonizes where? 2) causes what illnesses in what population?
1) colonizes vagina 2) pneumonia, meningitis, sepsis MAINLY IN BABIES ( GROUP B - B FOR BABIES)
prego women testing for strep agalatiae- 1) when? 2) treatment?
1) 35-37 weeks 2) intrapartum peniciilin prophylaxis
Enterococci Faecalis and Faecium 1) what group? 2) go through lab testing in your head…
1) Group D strep 2) gram pos –> catalase neg –> gamma hemo –> growth in bile and 6.5% NaCl
Enterococcus faecalis and faecium- 1) Normal flora? 2) Cause what illnesses?
1) yes normal in colon 2) cause UTI, biliary tract infection, ,subacute endocarditis
Streptococcus bovis - 1) go through lab testing in head… 2) flora where? 3) causes what?
1) gram pos –> catalase neg –> gamma hemo 2) normal in guy 3) causes bacteremia and subacute endocarditis in colon cancer patients “Bovis in the Blood = Cancer in the Colon”
Corynebacterium diphtheriae- 1) go through lab testing in head… 2) gross appearance:
1) Gram pos –>********************************************* 2) rods with metachromatic (blue and red) granules
What test for C. diphtheriae toxin?
Elek test for toxin
Corynebacterium diphtheriae- 1) symptoms of infection: 2) what agar and what color colonies?
1) pseudomembraneous pharyngitis (grayish-white membrane) with lymphadenopathy, myocarditis, and arrhythmias 2) cystine tellurite agar - black colonies
Spore forming bacterias that are found in soil:
-bacillus anthracis -clostridium perfringns -clostridium tetani
Spore forming bacteria - others (not in soil I guess)
-B. cereus -C botulinum -Coxiella burnetti
Gram positive, spore forming obligate anaerobic bacteria:
-C tetani -C botulinum -C perfringens -C difficile
floppy baby syndrome usually caused by what organism and how did baby get?
caused by clostridium botulinum parents gave baby contaminated honey
Clostridium difficile 1) what toxin(s)? what do toxin(s) do? 2) diagnosis? 3) treatment:
1) Toxin A-enterotoxin-binds to the brush border of the gut Toxin B- cytotoxin-causes cytoskeletal disruption via actin depolymerization –>pseudomembraneous colitis –> diarrhea 2) detect one or both toxins in poop 3) metronidazole or oral vancomycin; may need fecal transplant if recurrent
only organism with a polypeptide capsule that contains D-glutamate?
bacillus anthracis
anthrax is caused by what organism?
bacillus anthracis
Bacillus anthracis: 1) lab testing stuff: 2) toxin produced? 3) disease caused? 4) special detail about its capsule
1) gram + –> spore-forming rod 2) anthrax toxin 3) anthrax durp 4) only polypeptide capsule that contains D-glutamate
Cutaneous anthrax- 1) appearance? 2) pain? 3) progression?
1) boil-like lesion –> ulcer with black eschar - necrotic 2) painless 3) uncommonly progresses to bacteremia and death
pulmonary anthrax: 1) How do you get this disease? 2) symptoms and progression? 3) What profession most likely to get?
1) inhalation of spores 2) flu-like symptoms that progresses to fever, pulmonary hemorrhage, mediastinitis, and shock 3) Woolsorter’s disease - inhalation of spores from contaminated woool
Woolsorters disease is? caused by?
pulmonary anthrax by bacillus anthracis spores
Bacillus cereus 1) what condition? 2) types?
1) -causes food poisoning -spores survive cooking rice –> warm rice results in germination of spores and enterotoxin formation 2) types: -EMETIC TYPE: RICE AND PASTA - nausea and vomiting 1-5hrs - preformedtoxin=cereulide -Diarrheal type - watery, non-bloody diarrhea and GI pain within 8-18hrs
Emetic type food poisoning 1) food type? 2) organism? 3) toxin? 4) symptoms
1) pasta and rice 2) bacillus cereus 3) preformed enterotoxin - cereulide 4) nausea and vomiting within 1-5hrs
-Diarrheal type - 1) organism 2) symptoms
1) bacillus cereus 2) watery, non-bloody diarrhea and GI pain within 8-18hrs
Reheated rice syndrome organism?
Bacillus cereus - preformed toxins = food poisoning