Bacteria Flashcards
defensins
hydrophobic, cationic
pisitive - stick to neg charged membrane in bacteria and make pores
gram stain
- blue stain
- compexing agent - make stain into larger molecules
- extraction agent - pull out stain, but only works on gram negative!!
- red stain - only sticks on gram negative
gram positive cell membrane structure
peptido glycan cell wall - 1 really thick cell wall
single plasma membrane
many layers and extensive crosslinking in cell wall - gram stain cannot be washed out
Gram negative cell envelope structure
cytoplasmic membrane, very thin, non complex cell wall, outer cell membrane with LPS on the very outside
minimum number of layers and minimum cross linking - stain can be washed out
LPS
on outside of cell envelope in gram NEGATIVE - inflammatory and parrier
gram negative ONLY - for viability and some innate antibiotic resistance (i.e. PCN doesn’t wrk against a lot of gram negative because it has to get through LPS)
peptidoglycan sructure
N-acetylmuramic acid, N acetylglocusamine, pentapeptide ending in D-ala, D-ala
linked and then cross linked to make cell wall
disaccharaide w pentopeptide side chain, op together for cell wall and give the bacteria shape
GM + and -
osmotic integritity and shape - strength
Type 3 secretion system
only find in gram neg- 2 membranes
molecular syringe, inject proteins into cell - in eukaryotic cell
do bad things - paralyze or kill cell
evolutionarily related to flagella
LPS Lipid A
if purify and give to someone - massive immune respoinse!
fatty acids attach and anchor LPS into outer membrane
phosphorylated glucosamine disaccharide backbone
Core polysaccharides of LPS
branched polysaccharide of 9-12 sugars
if gram neg - need LPS to be vaible - core and lipid A
LPS O-specific antigen
repeating unit structure
long linear polysacchadie - variable, different repeating sugars
major serologic determinant
Transformation
bacterium takes up free DNA and adds into genome
takes up as single strand and releases soluble nts, then repairs to have 2nd strand
big receptor or small receptor
neisseria antigenic variation
transformation!
Neisseria species can vary their surface structures, including pilli and capsule. It is clear that natural transformation plays a role in this process, allowing Neisseria to share genes encoding variations of these structures.
PCN resistance in streptococcus pneumoniae
Transformation
penicillin resistance has become widespread amongst Streptococcus pneumoniae strains. In this case the penicillin resistance is due to altered penicillin-binding proteins (PBPs) which exhibit a low affinity for beta lactam antibiotics. Comparison of the nucleotide sequences encoding the PBPs in S. pneumoniae and S. mitis demonstrates that horizontal gene transfer has occurred between these two bacteria.
transduction
bacteriophages
viruses that attack bacteria and are specific for closely related bacterial species
virulent phage
virulent phages - always cause lysis and release of phage particles - clear plaques on bacterial lawns
temperate phage
may cause lysis OR may integrate stably into the bacterial host’s chromosome, generate turbind paques and persst as prophages
induced by DNA damage to excise and repliicae
all prophage genes are repressed except for a phage repressor gene
Temperate phages may establish a state of dormancy within the cell, often by integrating into the chromosomal DNA at a specific attachment site, by means of a phage-coded integrase enzyme. The dormant phage is known as a prophage and the state of dormancy is known as the lysogenic state
intermediate phages
replicate stably int he host cell and continually release progeny
no lysis
lysogenic state
phage is in a dormant state in bacteria
integrating chromosomal DNA at a specific site
dormant phage = prophage
lysogenic conversion
Certain temperate phages have incorporated bacterial genes that have nothing to do with the phage life cycle. When a bacterial cell is lysogenized by such a phage, any such incorporated gene is expressed and becomes a phenotypic trait of the bacterium. The best-known genes of this type are toxin genes, including genes for the diphtheria, tetanus, and scarlatiniform toxins
generalized transduction
occasionally encapsulate host DNA, which is transferred to any new host upon infection
have different chromosomal segments stuffed in pacteriophage head
any bacterial gene transferred
typically only bacteria genes - no viral genes
probably accidental consequence of phage multiplication - no proven clinical relevance
specialized transduction
always take same genetic info!
pecialized transduction is the process by which a restricted set of bacterial genes is transferred to another bacterium. The genes that get transferred (donor genes) depend on where the phage genome is located on the chromosome. Specialized transduction occurs when the prophage excises imprecisely from the chromosome so that bacterial genes lying adjacent to the prophage are included in the excised DNA. The excised DNA is then packaged into a new virus particle, which then delivers the DNA to a new bacterium, where the donor genes can be inserted into the recipient chromosome or remain in the cytoplasm, depending on the nature of the bacteriophage.
plasmids
non essential but hereditarily stable, self replicating
circular and supercoiled
medically important accessory functions
bacterial mating!
conjugation
pilus - gram 0 membrane fusion - single strand into 2nd bacteria - replicate into plasmid or integrate into chromosome
plasmids spread rapidly - toxins are plsmid encoded - abx resistance
transposons
discrete segments of DNA that encode recombination enzymes - transposases
move from one dnA location to another
IS elements
The simplest transposons are DNA segments that encode only their own transposase and are known historically as insertion sequences (IS elements).
Type I transposon
transposase, resolution site, resolvase, short terminal inverted repeats
conjugative transposon
only conjugated as a plasmid - when excised
only circular during transfer process
can reintegrate
mobility is largely theoretical
chromosomal islands
chromosomal regions that contain only genes for pathogenicity, resistance, or other accessory functions
“islands” - can be visualized as genomic disparities
diff between pathogenic and non-pathogenic
Staph basics
gram positive cocci - really thick cell wall
how to differentiate staph and strep? and what kind of staph?
catalase - if there is coagulation - it is staph, if no coagulation - it is strep
add coagulase to staph - if positive - s. aureus, if negative - one of the other staph
staphylococcus saprophyticus
UTIs in young women (second to e. coli)
pathogenesis: adhesins for uroepithealial cells, urination after intercourse and abx
ability to cause infection in otherwise sterile space
staphylococcus epidermis
device related - catheters, valves, joints
normal flora on the skin
form biofilms! hard to treat
abx and replacement/removal of foreign body
MSSA, MRSA
methicillin sensitive (or resistant) staph aureus
staphylococcus aureus
colonizes many people, infects a lot in hospitals and community
most infections are skin and soft tissue
MSSA, MRSA
skin and tissue infections, pneumonia, endocarditis
strain to strain variability, contact transmission
access to bloodstream, deep tissue, dissemination to all organs and tissues, attachment to ecm proteins via cell surface molecules, secrete protein for immune evasion
s. aureus virulence factors
adhesions - promote attachment to tissues - switch to secreted proteins
exoproteins - made during stationary phase, promote tissue destrcution dissemination, nutrient acquisition
Protein A
S. aureus
binds Fc portion of IgG and inhibits ab mediated phagocytic killing
PBP
penicillin binding proteins
gram positive cell wall - involved in cell wall biosynthesis
target for PCN
mecA
found in MRSA
codes for PBP2 - makes bacteria resistant to all beta lactams because they can’t bind to normal PBP
s. aureus
membrane damaging toxins
exprotien in staph aureus
pore forming toxn - targets cells - disarm host kill cells
exfoliative toxins
serine protease - cleaves desmoglien - scalleded skin syndrome
superantigens
non specifically stimulates 20% circulating t cells
release over overwhelming amt of cytokines - severe systemic reactions
toxic shock syndrome toxin 1
TSS associated w menstration
SEIX
lethality of CA_MRSA necrotitzing pneumonia
Toxin mediated diseases caused by s. aureus
GI (food poisoning)
TSS
scaleded skin syndrome
necrotic diseases caused by s. aureus
impetigo, folliculitis
Staphylococcal food poisoning
intoxication not an infection
eat toxin containing food
enterotoxins - heat stable - resist gastric acid hydrolysis - stimulate T cells to make cytokines
toxic shock syndrome
staph
sudden onset of symptoms - high fever, rash, GI, multisymptoms
risk factors = tampons, abscesses
toxins involved
s. aureus abscesses
necrotic enter with live and dead bacteria, leukocytes, and pus
surrounded by fibrin wall and inflammatory cells
abscess promoting: dead leukocytes, secreted immune modulators and cytotoxons
MRSA drug
vancomycin
MSSA drug
oxacillin/nafcillin
strep basics
gram positive
beta hemolytic
lysis of RBC all around colonies
alpha hemolytic
oxidation of Hg due to H2O2
beta hemolytic strep
if does not grow in presence of bacitracin - strep pyogenes
if does grow with bacitracit (resistant) - another beta hemolytic strep
M protein
strep
antiphagocytic
evades phagocytic cells unless host has ab particular to that specific M protein
one you make ab, you can phagocytose the strep but that takes like 1 weeks
Streptococcus pyogenes
Group A strep
oropharynx of children and young adults and skin
pass person to person and through breaks in skin
can cause invasive, disseminated infection, TSS, post infections sequalae (rheumatic fever and glomerulonephritis)
skin: impetigo, erysipelas, cellulitis, scarlet fever, necrotizing fascitis
rheumatic fever
strep pyogenes (group A) post infections sequenli
heart inflammation - recurrent episodes can lead to rheumatic heart disease (need heart transplant
acute post strep glomerulonephritis
post-infections sequeale of group a strep
inflammation
can lead to renal failure
S. Pyogenes Treatment
PCN
no asymptomatic carriage unless history of rheumatic fever
no vaccine
streptococcus agalactiae
Group B strem
small gram positive coccus
beta/non hemolytic
bactiracin resistant (unlike GAS)
antiphagocytic polysaccharides
normal vlora of GI - soread maternal-fetal in utero
disseminated infection, maternal and newborn infections, UTI
Group B strep treatment
PCR or culture
PCN suscemptible
no vaccine
streptococcus pneumoniae
dipliccocus
over 90 serotypes of capsular polysaccharide (like M protein for this strain)
very common and highly adotpable
lobar pneumonia - not a lot of destruction just problem with gas exchange
middle ear infection, meningitis (survive in blood because encapsulated)
s. pneumoniae and abx
resistant to beta-lactam abx
altered PBPS - reduce affinity for PCN, resistance is spread and codominant
pneumococcal-protein conjugate vaccine
13 capsular polysacchardides linked to diphtheria toxoid to generate thymus dependent immunity
herd immunity
serotype replacement - keep having to add more
enterococcus
Group D
normal flora in intestine
HA infections! endocarditis on heart valves, catheters, role of biofilms, ICU
abx resistance
VRE
vancomycin resistant enterococci
acquisition of plasmids or transposons - mediates broad resistance
when kill everything, this is what is left
Enterococci abx
intrinsic resistance to PCN, Cephalosporins, Clinda
beta lactams select for survival
can acquire resistance toa lot of other things
mechanism of vancomysin resistance
instaed of D-ala D-ala, becomes D-ala, D-lactate
way decreased affinity for vancomysin
get this cell wall structure from transposons
Why is there no vaccine against GAS?
increased variability of M protein - associated with rheumatic fever
Why no GBS vaccine for infants?
capsular polysaccharide - infants have poor response and would have to vaccinate mom
why is s. pneumoniae vaccine incomplete
only covers 13 serotypes
why no vaccine against enterococcus
ICU patients - hard to know who to give it to
e. coli basics
enterobacteriaceae
gram NEG
mot are lactose positive
different serotypes: O ag (LPS), H ag (Flagellum), K ag (capsule)
ETEC
enterotoxigenic E Coli
mild - infant and traveler’s diarrhea
watery diarrhea (no blood, fever, vomiting)
small intestine - usually mild, self limiting
food and water, high infectious dose
shed in stool even if asymptomatic
ETEC colonization
pili - encoded by plasmid - binds to small bowel enterocytes (host species specificity)
strong ag - many different types (even on a single cell)
ETEC Heat Labile Toxin
plasmid encoded
2 subunits - A1B5 - b binds and a ADP ribosylates G protein
turns on adenylate cyclease - more cAMP - phosphorylates proteins
in crypt cells: Cl- out
in absorptive cells, NaCl can’t come back in
increase ionic strength - more ions inside than outside - less water into cells, water in diarrhea